I. James

发表

Evidence of HIV-1 Adaptation to HLA-Restricted Immune Responses at a Population Level

C. Moore, M. John, I. James, 2002, Science.

Association between presence of HLA-B*5701, HLA-DR7, and HLA-DQ3 and hypersensitivity to HIV-1 reverse-transcriptase inhibitor abacavir

C. Moore, I. James, F. Christiansen, 2002, The Lancet.

Predisposition to abacavir hypersensitivity conferred by HLA-B*5701 and a haplotypic Hsp70-Hom variant

I. James, F. Christiansen, S. Mallal, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Predisposition to nevirapine hypersensitivity associated with HLA-DRB1*0101 and abrogated by low CD4 T-cell counts

C. Moore, I. James, F. Christiansen, 2005, AIDS.

Associations Between HLA-DRB1*0102, HLA-B*5801, and Hepatotoxicity During Initiation of Nevirapine-Containing Regimens in South Africa

M. Lederman, I. James, S. Mallal, 2013, Journal of acquired immune deficiency syndromes.

Clinical profile and HLA-DRB1 genotype of late onset multiple sclerosis in Western Australia

I. James, F. Christiansen, F. Mastaglia, 2010, Journal of Clinical Neuroscience.

Apolipoprotein ε alleles in sporadic inclusion body myositis: A reappraisal

I. James, F. Mastaglia, T. Day, 2008, Neuromuscular Disorders.

Case report Apolipoprotein e alleles in sporadic inclusion body myositis: A reappraisal

I. James, F. Mastaglia, T. Day, 2008 .

Low Current and Nadir CD4+ T-Cell Counts are Associated with Higher Hepatitis C virus RNA Levels in the Swiss HIV Cohort Study

I. James, R. Weber, H. Furrer, 2007, Antiviral therapy.

Short communication Low current and nadir CD4 + T-cell counts are associated with higher hepatitis C virus RNA levels in the Swiss HIV Cohort Study

I. James, R. Weber, H. Furrer, 2008 .

Low level of systemic autoimmunity in Western Australian multiple sclerosis patients

I. James, F. Christiansen, F. Mastaglia, 2010, Multiple sclerosis.

Tissue-Specific Associations Between Mitochondrial DNA Levels and Current Treatment Status in HIV-Infected Individuals

I. James, S. Mallal, S. Wesselingh, 2006, Journal of acquired immune deficiency syndromes.

Contributions of vitamin D response elements and HLA promoters to multiple sclerosis risk

I. James, F. Christiansen, C. Witt, 2012, Neurology.

Adaptive Interactions between HLA and HIV-1: Highly Divergent Selection Imposed by HLA Class I Molecules with Common Supertype Motifs

D. Heckerman, R. Haubrich, M. John, 2010, The Journal of Immunology.

Population Level Analysis of Human Immunodeficiency Virus Type 1 Hypermutation and Its Relationship with APOBEC3G and vif Genetic Variation

C. Moore, I. James, S. Mallal, 2006, Journal of Virology.

Combining HLA-DR risk alleles and anti-Epstein-Barr virus antibody profiles to stratify multiple sclerosis risk

I. James, A. Kermode, W. Carroll, 2014, Multiple sclerosis.

Immune restoration disease after the treatment of immunodeficient HIV‐infected patients with highly active antiretroviral therapy

M. John, I. James, S. Mallal, 2000, HIV medicine.

Detection of subclinical Mycobacterium avium intracellulare complex infection in immunodeficient HIV-infected patients treated with zidovudine

I. James, S. Mallal, M. French, 1994, AIDS.

Contribution of nucleoside analogue reverse transcriptase inhibitors to subcutaneous fat wasting in patients with HIV infection

C. Moore, M. John, I. James, 2000, AIDS.

Chronic hyperlactatemia in HIV-infected patients taking antiretroviral therapy

C. Moore, I. James, S. Mallal, 2001, AIDS.

New genetic predictors for abacavir tolerance in HLA-B*57:01 positive individuals.

I. James, S. Mallal, J. Montaner, 2020, Human immunology.

HLA-A*32:01 is strongly associated with vancomycin-induced drug reaction with eosinophilia and systemic symptoms.

I. James, S. Mallal, C. Shaffer, 2019, The Journal of allergy and clinical immunology.

Influence of Human Leukocyte Antigen (HLA) Alleles and Killer Cell Immunoglobulin‐Like Receptors (KIR) Types on Heparin‐Induced Thrombocytopenia (HIT)

I. James, S. Mallal, D. Roden, 2017, Pharmacotherapy.

Supertype Motifs by HLA Class I Molecules with Common HIV-1: Highly Divergent Selection Imposed Adaptive Interactions between HLA and

D. Heckerman, R. Haubrich, M. John, 2010 .

HLA-DRB1 allele heterogeneity influences multiple sclerosis severity as well as risk in Western Australia

I. James, F. Christiansen, F. Mastaglia, 2010, Journal of Neuroimmunology.

Influence of HLA-DRB1 allele heterogeneity on disease risk and clinical course in a West Australian MS cohort: a high-resolution genotyping study

I. James, F. Christiansen, F. Mastaglia, 2010, Multiple sclerosis.

Protease inhibitors and nucleoside analogue reverse transcriptase inhibitors interact to cause subcutaneous fat wasting in patients with HIV infection

C. Moore, M. John, I. James, 1999 .

Plasma CXCL10, sCD163 and sCD14 Levels Have Distinct Associations with Antiretroviral Treatment and Cardiovascular Disease Risk Factors

I. James, D. Nolan, A. Castley, 2016, PloS one.

High-resolution HLA-DRB1 genotyping in an Australian inclusion body myositis (s-IBM) cohort: An analysis of disease-associated alleles and diplotypes

I. James, F. Christiansen, C. Witt, 2012, Journal of Neuroimmunology.

Frequency of autoantibodies and correlation with HLA-DRB1 genotype in sporadic inclusion body myositis (s-IBM): A population control study

I. James, F. Christiansen, F. Mastaglia, 2012, Journal of Neuroimmunology.

Skewed association of polyfunctional antigen-specific CD8 T cell populations with HLA-B genotype

M. John, I. James, S. Mallal, 2007, Proceedings of the National Academy of Sciences.

Immune responses to abacavir in antigen-presenting cells from hypersensitive patients

I. James, S. Mallal, J. McCluskey, 2007, AIDS.

Contribution of Nucleoside-Analogue Reverse Transcriptase Inhibitor Therapy to Lipoatrophy from the Population to the Cellular Level

I. James, S. Mallal, D. Nolan, 2002, Antiviral therapy.

Stable or increasing bone mineral density in HIV-infected patients treated with nelfinavir or indinavir

M. John, I. James, S. Mallal, 2001, AIDS.

Effects of HIV type-1 immune selection on susceptability to integrase inhibitor resistance

M. John, I. James, S. Mallal, 2009, Antiviral therapy.

Genome-wide HLA-associated-selection in HIV-1 and protein-specific correlations with viral load: An ACTG5142 study

D. Heckerman, R. Haubrich, M. John, 2008 .

Recovery of CD4+ T Cells in HIV Patients With a Stable Virologic Response to Antiretroviral Therapy Is Associated With Polymorphisms of Interleukin-6 and Central Major Histocompatibility Complex Genes

I. James, P. Price, S. Fernandez, 2006, Journal of acquired immune deficiency syndromes.

Improving the Effectiveness of Penicillin Allergy De-labeling.

I. James, E. Phillips, R. Pavlos, 2015, The journal of allergy and clinical immunology. In practice.

IL1A alleles associate with a virological response to antiretroviral therapy in HIV patients beginning therapy with advanced disease

I. James, P. Price, 2009, AIDS.

Alleles of the gene encoding IL-1α may predict control of plasma viraemia in HIV-1 patients on highly active antiretroviral therapy

I. James, P. Price, S. Fernandez, 2004, AIDS.

Proportions of circulating T cells with a regulatory cell phenotype increase with HIV-associated immune activation and remain high on antiretroviral therapy

I. James, P. Price, D. Tan, 2007, AIDS.

The effect of combination antiretroviral therapy on CD5 B‐ cells, B‐cell activation and hypergammaglobulinaemia in HIV‐1‐infected patients

I. James, P. Price, M. French, 2005, HIV medicine.

Predisposition to nevirapine hypersensitivity associated with HLA-DRB1*01 and higher CD4+ T cell counts

I. James, S. Mallal, E. Phillips, 2004 .

HIV: Experiencing the Pressures of Modern Life

I. James, S. Mallal, D. Nolan, 2005, Science.

Immunological profiles of immune restoration disease presenting as mycobacterial lymphadenitis and cryptococcal meningitis

I. James, P. Price, D. Tan, 2008, HIV medicine.

Strategies to identify candidates for D variant genotyping.

I. James, M. Keller, Xunda Luo, 2018, Blood transfusion = Trasfusione del sangue.

Abacavir stimulates Hsp70 redistribution in Antigen-presenting cells of patients with hypersensitivity: Association with Type-I alcohol dehydrogenase activity

I. James, S. Mallal, J. McCluskey, 2005 .

Alleles of the IL12B 3'UTR associate with late onset of type 1 diabetes.

I. James, F. Christiansen, G. Morahan, 2004, Human immunology.

HLA-Bw4 homozygosity is associated with an impaired CD4 T cell recovery after initiation of antiretroviral therapy.

M. John, I. James, S. Mallal, 2008, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Homozygosity Is Associated with an Impaired CD 4 T Cell Recovery after Initiation of Antiretroviral Therapy

M. John, I. James, S. Mallal, 2008 .

Analysis of the QuantiFERON-CMV assay, CMV viraemia and antiviral treatment following solid organ transplantation in Western Australia.

M. John, I. James, J. Baumwol, 2018, Pathology.

Viral Adaptation to Host Immune Responses Occurs in Chronic Hepatitis B Virus (HBV) Infection, and Adaptation Is Greatest in HBV e Antigen-Negative Disease

I. James, S. Mallal, S. Lewin, 2011, Journal of Virology.

Divergent adaptation of hepatitis C virus genotypes 1 and 3 to human leukocyte antigen–restricted immune pressure

M. John, I. James, S. Mallal, 2009, Hepatology.

Hepatitis C virus drug resistance and immune‐driven adaptations: Relevance to new antiviral therapy

I. James, S. Mallal, P. Klenerman, 2009, Hepatology.

Subcutaneous fat tissue mitochondrial DNA depletion and adipose toxicity are strongly associated with nucleoside reverse transcriptase inhibitor (NRTI) therapy in HIV-infected patients

I. James, S. Mallal, D. Nolan, 2003 .

Interferon-Gamma Responses to Candida Recover Slowly or Remain Low in Immunodeficient HIV Patients Responding to ART

J. Warmington, I. James, P. Price, 2006, Journal of Clinical Immunology.

The role of SNPs in the α-chain of the IL-7R gene in CD4+ T-cell recovery in HIV-infected African patients receiving suppressive cART

I. James, G. Stewart, D. Booth, 2011, Genes and Immunity.

Raised lactate levels are common and may be predictive of subcutaneous fat wasting

C. Moore, M. John, I. James, 2000 .

Tests for Genetic Interactions in Type 1 Diabetes

J. Todd, I. James, B. Akolkar, 2011, Diabetes.

Effect of linkage status of affected sib‐pairs on the search for novel type 1 diabetes susceptibility genes in the HLA complex

I. James, G. Morahan, E. McKinnon, 2009, Diabetes, obesity & metabolism.

Association of MHC SNP genotype with susceptibility to type 1 diabetes: a modified survival approach

I. James, G. Morahan, D. Nolan, 2009, Diabetes, obesity & metabolism.

Human Endogenous Retrovirus (HERVK9) Structural Polymorphism With Haplotypic HLA-A Allelic Associations

Jerzy K. Kulski, I. James, H. Inoko, 2008, Genetics.

Modifying effects of HLA-DRB1 allele interactions on age at onset of multiple sclerosis in Western Australia

I. James, F. Christiansen, F. Mastaglia, 2010, Multiple sclerosis.

Helicobacter pylori infection as a protective factor against multiple sclerosis risk in females

B. Marshall, I. James, A. Kermode, 2015, Journal of Neurology, Neurosurgery & Psychiatry.

Identifying Patient-Specific Epstein-Barr Nuclear Antigen-1 Genetic Variation and Potential Autoreactive Targets Relevant to Multiple Sclerosis Pathogenesis

I. James, A. Kermode, W. Carroll, 2016, PloS one.

Natural history of benign multiple sclerosis: Clinical and HLA correlates in a Western Australian cohort

I. James, F. Mastaglia, A. Kermode, 2018, Journal of the Neurological Sciences.

Extensive HLA-driven viral diversity following a narrow-source HIV-1 outbreak in rural China.

M. John, I. James, S. Mallal, 2011, Blood.

Disease-modifying effects of an SCAF4 structural variant in a predominantly SOD1 ALS cohort

A. Roses, I. James, F. Mastaglia, 2020, Neurology: Genetics.

Mapping the Landscape of Host-Pathogen Coevolution: HLA Class I Binding and Its Relationship with Evolutionary Conservation in Human and Viral Proteins

Nebojsa Jojic, Tomer Hertz, David Nolan, 2010, Journal of Virology.

Constrained Pattern of Viral Evolution in Acute and Early HCV Infection Limits Viral Plasticity

M. John, I. James, S. Mallal, 2011, PloS one.

Generation of a Novel SARS-CoV-2 Sub-genomic RNA Due to the R203K/G204R Variant in Nucleocapsid: Homologous Recombination has Potential to Change SARS-CoV-2 at Both Protein and RNA Level

M. John, I. James, S. Mallal, 2021, Pathogens & immunity.

Generation of a novel SARS-CoV-2 sub-genomic RNA due to the R203K/G204R variant in nucleocapsid: homologous recombination has potential to change SARS-CoV-2 at both protein and RNA level

M. John, I. James, S. Mallal, 2020, bioRxiv.

Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA

Bette Korber, Michael Bunce, Philip J. R. Goulder, 2004, Nature.

HLA targeting efficiency correlates with human T-cell response magnitude and with mortality from influenza A infection

N. Jojic, I. James, S. Mallal, 2012, Proceedings of the National Academy of Sciences.

High-avidity, high-IFNγ-producing CD8 T-cell responses following immune selection during HIV-1 infection

D. Heckerman, M. John, I. James, 2011, Immunology and cell biology.

Evidence of Viral Adaptation to HLA Class I-Restricted Immune Pressure in Chronic Hepatitis C Virus Infection

I. James, S. Mallal, A. Telenti, 2006, Journal of Virology.

Effect of Immune Pressure on Hepatitis C Virus Evolution: Insights From a Single-Source Outbreak

M. John, I. James, P. Klenerman, 2011, Hepatology.

Evidence of CD4+ T cell-mediated immune pressure on the Hepatitis C virus genome

M. John, I. James, S. Mallal, 2018, Scientific Reports.

Longitudinal Trends in Western Australian HIV-1 Sequence Diversity and Viral Transmission Networks and Their Influence on Clinical Parameters: 2000-2014.

M. John, I. James, S. Gaudieri, 2016, AIDS research and human retroviruses.

Sporadic inclusion body myositis: Phenotypic variability and influence of HLA-DR3 in a cohort of 57 Australian cases

F L Mastaglia, I. James, F. Christiansen, 2008, Journal of Neurology, Neurosurgery, and Psychiatry.

Human leukocyte antigen associations with protection against tuberculosis infection and disease in human immunodeficiency virus-1 infected individuals, despite household tuberculosis exposure and immune suppression.

R. Chaisson, I. James, S. Mallal, 2020, Tuberculosis.

Evaluation of IL12B as a candidate type I diabetes susceptibility gene using data from the Type I Diabetes Genetics Consortium

I. James, G. Morahan, F. Pociot, 2009, Genes and Immunity.

HLA-DQ 3 and hypersensitivity to HIV-1 reverse-transcriptase inhibitor abacavir

C. Moore, I. James, C. Witt, 2022 .

Spinal cord involvement in multiple sclerosis: A correlative MRI and high-resolution HLA-DRB1 genotyping study

I. James, F. Christiansen, F. Mastaglia, 2011, Journal of the Neurological Sciences.

High Frequency of HIV Mutations Associated with HLA-C Suggests Enhanced HLA-C–Restricted CTL Selective Pressure Associated with an AIDS-Protective Polymorphism

M. John, I. James, S. Rowland-Jones, 2012, The Journal of Immunology.

Reduction of mitochondrial DNA content and respiratory chain activity occurs in adipocytes within 6–12 months of commencing nucleoside reverse transcriptase inhibitor therapy

I. James, S. Mallal, D. Nolan, 2004, AIDS.

HLA Class I and II alleles, heterozygosity and HLA-KIR interactions are associated with rates of genital HSV shedding and lesions

M. John, I. James, S. Mallal, 2016, Genes and Immunity.

NK receptor genes are predictors of HIV progression

C. Moore, I. James, F. Christiansen, 2003 .

The influence of non-HLA gene polymorphisms and interactions on disease risk in a Western Australian multiple sclerosis cohort

I. James, F. Christiansen, F. Mastaglia, 2013, Journal of Neuroimmunology.

HLA-DR allele polymorphism and multiple sclerosis in Chinese populations: a meta-analysis

I. James, F. Mastaglia, A. Kermode, 2011, Multiple sclerosis.

Sporadic inclusion body myositis: HLA-DRB1 allele interactions influence disease risk and clinical phenotype

Ian James, Timothy Day, Adrian Scott, 2009, Neuromuscular Disorders.

Polymorphism in the TOMM40 gene modifies the risk of developing sporadic inclusion body myositis and the age of onset of symptoms

I. James, F. Mastaglia, A. Saunders, 2013, Neuromuscular Disorders.

Analysis of HLA-DRB3 alleles and supertypical genotypes in the MHC Class II region in sporadic inclusion body myositis

I. James, C. Witt, F. Mastaglia, 2013, Journal of Neuroimmunology.

Restoration of CD4 T‐cell responses to cytomegalovirus is short‐lived in severely immunodeficient HIV‐infected patients responding to highly active antiretroviral therapy

I. James, P. Price, M. French, 2004, HIV medicine.

Missingness in the T1DGC MHC fine‐mapping SNP data: association with HLA genotype and potential influence on genetic association studies

I. James, G. Morahan, S. Gaudieri, 2009, Diabetes, obesity & metabolism.

Cytokine Profiling in Abacavir Hypersensitivity Patients

I. James, S. Mallal, E. Phillips, 2008, Antiviral therapy.

Randomized, Controlled, 48‐Week Study of Switching Stavudine and/or Protease Inhibitors to Combivir/Abacavir to Prevent or Reverse Lipoatrophy in HIV‐Infected Patients

C. Moore, M. John, I. James, 2003, Journal of acquired immune deficiency syndromes.

Viral load detectability profiles for HIV infection

M. John, I. James, S. Mallal, 2003, Statistics in medicine.

The adjacent amino acid polymorphisms in the nucleocapsid (R203K/G204R) of SARS-

M. John, I. James, S. Mallal, 2021 .

Interactive Selective Pressures of Hla-Restricted Immune Responses and Antiretroviral Drugs on HIV-1

C. Moore, M. John, I. James, 2005, Antiviral therapy.

Association of a structural variant within the SQSTM1 gene with amyotrophic lateral sclerosis

I. James, F. Mastaglia, N. Siddique, 2020, Neurology: Genetics.

Quantitative determination of JAK2 V617F by TaqMan: An absolute measure of averaged copies per cell that may be associated with the different types of myeloproliferative disorders.

Ian James, Richard Herrmann, Kathryn Shaw, 2007, The Journal of molecular diagnostics : JMD.

Primer ID Ultra-Deep Sequencing Reveals Dynamics of drug Resistance-Associated Variants in Breakthrough Hepatitis C Viruses: Relevance to Treatment Outcome and Resistance Screening

Cassandra B. Jabara, D. Hazuda, I. James, 2016, Antiviral therapy.

Novel STMN2 Variant Linked to Amyotrophic Lateral Sclerosis Risk and Clinical Phenotype

I. James, F. Mastaglia, A. Saunders, 2021, Frontiers in Aging Neuroscience.

Correction for Founder Effects in Host-Viral Association Studies via Principal Components

Karyn L. Reeves, I. James, E. McKinnon, 2012, Statistical applications in genetics and molecular biology.

57 Australian cases of variability and influence of HLA-DR3 in a cohort Sporadic inclusion body myositis: Phenotypic

I. James, F. Christiansen, M. Needham, 2008 .

Apolipoprotein epsilon alleles in sporadic inclusion body myositis: a reappraisal.

I. James, F. Mastaglia, T. Day, 2008, Neuromuscular disorders : NMD.

Presence of CSF oligoclonal bands (OCB) is associated with the HLA-DRB1 genotype in a West Australian multiple sclerosis cohort

I. James, F. Christiansen, F. Mastaglia, 2010, Journal of the Neurological Sciences.

Carriage of HLA-B*5701 and a haplotypic Hsp70-Hom variant is associated with a Class I MHC-restricted hypersensitivity response to abacavir

I. James, F. Christiansen, S. Mallal, 2004 .

HIV/AIDS. HIV: experiencing the pressures of modern life.

I. James, S. Mallal, D. Nolan, 2005, Science.

Relationship between urinary cotinine level and diagnosis in children admitted to hospital.

I. James, P. Lesouëf, L. Landau, 1992, The American review of respiratory disease.

Information for : Genome-wide association study and meta-analysis indicates that over 40 loci affect risk of type 1 diabetes

Helen Schuilenburg, Neil M. Walker, John A. Todd, 2009 .

Erratum: Evidence of viral adaptation to HLA class I-restricted immune pressure in chronic hepatitis C virus infection (Journal of Virology (2006) 80, 22, (11094-11104))

Amalio Telenti, Hansjakob Furrer, Manuel Battegay, 2007 .

Tumour necrosis factor-alpha gene -238G/A promoter polymorphism associated with a more rapid onset of lipodystrophy

C. Moore, M. John, I. James, 2003, AIDS.

G.P.5.06 HLA alleles and MHC haplotypes in sporadic inclusion body myositis: Frequencies and phenotypic correlations

I. James, F. Christiansen, F. Mastaglia, 2008, Neuromuscular Disorders.

Hepatitis C virus drug resistance and immune‐driven adaptations: Relevance to new antiviral therapy

I. James, S. Mallal, P. Klenerman, 2009, Hepatology.

The influence of non-HLA gene polymorphisms and interactions on disease risk in a Western Australian multiple sclerosis cohort

I. James, F. Christiansen, F. Mastaglia, 2013, Journal of Neuroimmunology.

Population Level Analysis of Human Immunodeficiency Virus Type 1 Hypermutation and Its Relationship with APOBEC3G and vif Genetic Variation

David Nolan, Ian James, Simon Mallal, 2007, Journal of Virology.

Host MHC influences susceptibility to hypersensitivity reactions to two drugs commonly used in HIV therapy

C. Moore, I. James, F. Christiansen, 2005 .