N. Sugimoto

发表

Improved free-energy parameters for predictions of RNA duplex stability.

D. Turner, S. Freier, R. Kierzek, 1986, Proceedings of the National Academy of Sciences of the United States of America.

RNA structure prediction.

D. Turner, S. Freier, N. Sugimoto, 1988, Annual review of biophysics and biophysical chemistry.

Improved parameters for prediction of RNA structure.

C. E. Longfellow, D. Turner, S. Freier, 1987, Cold Spring Harbor symposia on quantitative biology.

Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes.

N. Sugimoto, S. Nakano, M. Katoh, 1995, Biochemistry.

Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes.

N. Sugimoto, S. Nakano, M. Yoneyama, 1996, Nucleic acids research.

Nucleic acid with guanidinium modification exhibits efficient cellular uptake.

N. Sugimoto, M. Kuwahara, H. Sawai, 2005, Angewandte Chemie.

Free energy increments for hydrogen bonds in nucleic acid base pairs

D. Turner, R. Kierzek, N. Sugimoto, 1987 .

Thermodynamic study of internal loops in oligoribonucleotides: symmetric loops are more stable than asymmetric loops.

D. Turner, R. Kierzek, N. Sugimoto, 1991, Biochemistry.

DNA logic gates based on structural polymorphism of telomere DNA molecules responding to chemical input signals.

N. Sugimoto, D. Miyoshi, Mamiko Inoue, 2006, Angewandte Chemie.

Detection of a Prognostic Indicator in Early‐Stage Cancer Using Functionalized Graphene‐Based Peptide Sensors

N. Sugimoto, X. Qu, J. Ren, 2012, Advanced materials.

Ultrasensitive and Selective Detection of a Prognostic Indicator in Early‐Stage Cancer Using Graphene Oxide and Carbon Nanotubes

N. Sugimoto, X. Qu, J. Ren, 2010 .

Composite of Au nanoparticles and molecularly imprinted polymer as a sensing material.

N. Sugimoto, J. Matsui, D. Miyoshi, 2004, Analytical chemistry.

Stability prediction of canonical and non-canonical structures of nucleic acids in various molecular environments and cells.

N. Sugimoto, Shuntaro Takahashi, 2020, Chemical Society reviews.

Rational Design and Tuning of Functional RNA Switch to Control an Allosteric Intermolecular Interaction.

N. Sugimoto, T. Endoh, 2015, Analytical chemistry.

Synthetic cinchonidine receptors obtained by cross-linking linear poly(methacrylic acid) derivatives as an alternative molecular imprinting technique.

N. Sugimoto, J. Matsui, K. Tamaki, 2004, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

Molecularly-imprinted polymeric logic gates selective for predetermined chemical input species.

N. Sugimoto, J. Matsui, K. Tamaki, 2006, Chemical communications.

Molecular imprinting under molecular crowding conditions: an aid to the synthesis of a high-capacity polymeric sorbent for triazine herbicides.

N. Sugimoto, J. Matsui, D. Miyoshi, 2007, Analytical chemistry.

An approach to peptide-based ATP receptors by a combination of random selection, rational design, and molecular imprinting.

N. Sugimoto, J. Matsui, D. Miyoshi, 2009, Biosensors & bioelectronics.

Unexpected Position-Dependent Effects of Ribose G-Quartets in G-Quadruplexes.

N. Sugimoto, Wei Wang, G. Salgado, 2017, Journal of the American Chemical Society.

Molecular Evolution of Functional Nucleic Acids with Chemical Modifications

Naoki Sugimoto, N. Sugimoto, M. Kuwahara, 2010, Molecules.

A fluorescent probe for detection of an intracellular prognostic indicator in early-stage cancer.

N. Sugimoto, X. Qu, J. Ren, 2015, Chemical communications.

Effect of Molecular Crowding on DNA Polymerase Reactions along Unnatural DNA Templates

N. Sugimoto, Shuntaro Takahashi, Piet Herdwijn, 2020, Molecules.

In vitro assays predictive of telomerase inhibitory effect of G-quadruplex ligands in cell nuclei.

N. Sugimoto, D. Miyoshi, T. Murashima, 2014, The journal of physical chemistry. B.

An oligopeptide containing the C-terminal sequence of RNase a has a potent RNase a binding property.

N. Sugimoto, S. Nakano, 2003, Journal of the American Chemical Society.

A Highly Sensitive Telomerase Activity Assay that Eliminates False-Negative Results Caused by PCR Inhibitors

N. Sugimoto, D. Miyoshi, T. Murashima, 2013, Molecules.

Effects of metal ions and catalytic loop sequences on the complex formation of a deoxyribozyme and its RNA substrate.

N. Sugimoto, N Sugimoto, Y Okumoto, 2000, Journal of inorganic biochemistry.

Energetics of internal GU mismatches in ribooligonucleotide helixes.

D. Turner, S. Freier, R. Kierzek, 1986, Biochemistry.

Quantitative Analysis of Nucleic Acid Stability with Ligands Under High Pressure to Design Novel Drugs Targeting G‐Quadruplexes

N. Sugimoto, Shuntaro Takahashi, 2017, Current protocols in nucleic acid chemistry.

The Stability of DNA and RNA G-Quartets †

N. Sugimoto, T. Ohmichi, M. Sasaki, 1996 .

Effect of Dangling Ends on the Double-Helix Melting of Ribooligonucleotides at Different Na+ Concentrations.

N. Sugimoto, A. Matsumura, M. Sasaki, 1991 .

Influences of ribonucleotide on a duplex conformation and its thermal stability: study with the chimeric RNA-DNA strands.

N. Sugimoto, S. Nakano, T. Kanzaki, 2004, Journal of the American Chemical Society.

A Stable DNA Tetraloop and Its Structural Tolerance for Modification

N. Sugimoto, M. Yoneyama, J. Kawakami, 2001 .

Alkylating probes for the G-quadruplex structure and evaluation of the properties of the alkylated G-quadruplex DNA.

N. Sugimoto, F. Nagatsugi, N. Sato, 2018, Organic & biomolecular chemistry.

Reaction field for efficient porphyrin metallation catalysis produced by self-assembly of a short DNA oligonucleotide

N. Sugimoto, T. Ohmichi, T. Toda, 1998 .

Cu2+ Inhibits the Aggregation of Amyloid β-Peptide(1-42) in vitro.

N. Sugimoto, J. Zou, Katsushi Kajita, 2001, Angewandte Chemie.

Hammerhead ribozyme activity and oligonucleotide duplex stability in mixed solutions of water and organic compounds

N. Sugimoto, S. Nakano, D. Miyoshi, 2014, FEBS open bio.

An anionic phthalocyanine decreases NRAS expression by breaking down its RNA G-quadruplex

N. Sugimoto, D. Miyoshi, K. Murata, 2018, Nature Communications.

Designable DNA Functions toward New Nanobiotechnology

N. Sugimoto, 2009 .

Beads-on-a-string structure of long telomeric DNAs under molecular crowding conditions.

N. Sugimoto, S. Nakano, D. Miyoshi, 2012, Journal of the American Chemical Society.

Sole and stable RNA duplexes of G-rich sequences located in the 5'-untranslated region of protooncogenes.

N. Sugimoto, D. Miyoshi, S. Saxena, 2010, Biochemistry.

Intramolecular G-quadruplex-hairpin loop structure competition of a GC-rich exon region in the TMPRSS2 gene.

N. Sugimoto, T. Nishikata, D. Miyoshi, 2021, Chemical communications.

Engineering exosome polymer hybrids by atom transfer radical polymerization

N. Sugimoto, K. Matyjaszewski, P. Campbell, 2020, Proceedings of the National Academy of Sciences.

Combined Effects of Methylated Cytosine and Molecular Crowding on the Thermodynamic Stability of DNA Duplexes

N. Sugimoto, D. Miyoshi, Mitsuki Tsuruta, 2021, International journal of molecular sciences.

Structural transition from antiparallel to parallel G-quadruplex of d(G4T4G4) induced by Ca2+.

N. Sugimoto, A. Nakao, D. Miyoshi, 2003, Nucleic acids research.

Topological impact of noncanonical DNA structures on Klenow fragment of DNA polymerase

N. Sugimoto, Shuntaro Takahashi, J. Brazier, 2017, Proceedings of the National Academy of Sciences.

Development of small peptides recognizing a monosaccharide by combinatorial chemistry

N. Sugimoto, D. Miyoshi, J. Zou, 2000 .

RNA structure prediction.

D. Turner, S. Freier, N. Sugimoto, 1988, Annual review of biophysics and biophysical chemistry.

Synthesis, structure and thermal stability of fully hydrophobic porphyrin–DNA conjugates

N. Sugimoto, J. Matsui, D. Miyoshi, 2007 .

Ruthenium Polypyridyl Complex Bound to a Unimolecular Chair-Form G-Quadruplex

James P. Hall, N. Sugimoto, N. Paterson, 2022, Journal of the American Chemical Society.

Synthesis of water-soluble porphyrin and the corresponding highly planar benzoporphyrin without meso-substituents

N. Sugimoto, N. Ono, S. Tsujimoto, 2005 .

Effect of molecular crowding on the stability of RNA G-quadruplexes with various numbers of quartets and lengths of loops.

N. Sugimoto, Shuntaro Takahashi, Saki Matsumoto, 2020, Biochemistry.

New Insights into Transcription Fidelity: Thermal Stability of Non-Canonical Structures in Template DNA Regulates Transcriptional Arrest, Pause, and Slippage

N. Sugimoto, H. Tateishi-Karimata, N. Isono, 2014, PloS one.

Effect of pressure on the stability of G-quadruplex DNA: thermodynamics under crowding conditions.

N. Sugimoto, Shuntaro Takahashi, 2013, Angewandte Chemie.

Designable DNA Functions Toward New Nanobiotechnology

N. Sugimoto, 2009 .

Hydration Is an Important Factor to Regulate Thermodynamic Stability of a DNA Duplex under Molecular Crowding Conditions

N. Sugimoto, Kazuya Koumoto, Hirofumi Ochiai, 2008 .

Effect of molecular crowding on DNA polymerase activity

N. Sugimoto, D. Miyoshi, Y. Sasaki, 2006, Biotechnology journal.

Effect of Putrescine and PEG on a Structural Transition of DNA G-Quadruplex

N. Sugimoto, A. Nakao, D. Miyoshi, 2003, Nucleosides, nucleotides & nucleic acids.

Volumetric Strategy for Quantitatively Elucidating a Local Hydration Network around a G-Quadruplex.

N. Sugimoto, Sudipta Bhowmik, Shuntaro Takahashi, 2022, Analytical chemistry.

Preferential targeting cancer-related i-motif DNAs by the plant flavonol fisetin for theranostics applications

N. Sugimoto, Saptarshi Ghosh, Sudipta Bhowmik, 2020, Scientific Reports.

Molecular imprinting in alcohols: utility of a pre-polymer based strategy for synthesizing stereoselective artificial receptor polymers in hydrophilic media

N. Sugimoto, J. Matsui, K. Tamaki, 2002 .

Sequence dependence for the energetics of terminal mismatches in ribooligonucleotides.

D. Turner, R. Kierzek, N. Sugimoto, 1987, Biochemistry.

Characterization of structure and stability of long telomeric DNA G-quadruplexes.

N. Sugimoto, D. Miyoshi, Hai-qing Yu, 2006, Journal of the American Chemical Society.

A rapid and sensitive "add-mix-measure" assay for multiple proteinases based on one gold nanoparticle-peptide-fluorophore conjugate.

N. Sugimoto, X. Qu, J. Ren, 2010, Biosensors & bioelectronics.

SURVEY AND SUMMARY Roles of non-canonical structures of nucleic acids in cancer and neurodegenerative diseases

N. Sugimoto, H. Tateishi-Karimata, 2021 .

Effect of DNA modifications on the transition between canonical and non-canonical DNA structures in CpG islands during senescence

N. Sugimoto, Saki Matsumoto, H. Tateishi-Karimata, 2021, RSC advances.

Applicability of the nearest-neighbour model for pseudoknot RNAs.

N. Sugimoto, Sagar Satpathi, T. Endoh, 2022, Chemical communications.

Inhibition of deoxyribooligonucleotides on the circle opening reaction of the intervening sequence from Tetrahymena thermophila.

D. Turner, R. Kierzek, N. Sugimoto, 1990 .

Triplex-forming peptide nucleic acid modified with 2-aminopyridine as a new tool for detection of A-to-I editing.

N. Sugimoto, E. Rozners, T. Endoh, 2016, Chemical communications.

Drastic Stabilization of Parallel DNA Hybridizations by a Polylysine Comb‐Type Copolymer with Hydrophilic Graft Chain

N. Sugimoto, A. Maruyama, S. Nakano, 2014, ChemMedChem.

The effect of molecular crowding with nucleotide length and cosolute structure on DNA duplex stability.

N. Sugimoto, S. Nakano, T. Ohmichi, 2004, Journal of the American Chemical Society.

Effect of cytosine protonation and cation on thermodynamic properties of parallel DNA triplex family.

N. Sugimoto, H. Hara, Y. Kawamoto, 2001, Nucleic acids research. Supplement.

A new concept for the design of antisense oligonucleotides based on nucleic acid thermostability.

N. Sugimoto, I. Yasumatsu, 2001, Current medicinal chemistry. Anti-cancer agents.

Thermodynamics and kinetics of propidium binding to poly(A)•poly(U) in aqueous solution

N. Sugimoto, M. Sasaki, N. Monden, 1990 .

Reevaluation of the stability of G-quadruplex structures under crowding conditions.

N. Sugimoto, J. Mergny, Can Li, 2016, Biochimie.

Control of guanine-rich DNA secondary structures depending on the protease activity using a designed PNA peptide.

N. Sugimoto, Keita Kobayashi, K. Usui, 2015, Organic & biomolecular chemistry.

Introduction of Peptide Functions into DNA by Nucleic Acid Peptides, NAPs

N. Sugimoto, J. Kawakami, S. Izumi, 2004 .

Controlling liquid-liquid phase separation of G-quadruplex-forming RNAs in a sequence-specific manner.

N. Sugimoto, D. Miyoshi, K. Kawauchi, 2022, Chemical communications.

Dynamics and energetics of the base flipping conformation studied with base pair-mimic nucleosides.

N. Sugimoto, S. Nakano, M. Fujii, 2009, Biochemistry.

Structural effect of synthetic zwitterionic cosolutes on the stability of DNA duplexes

N. Sugimoto, Kazuya Koumoto, Hirofumi Ochiai, 2008 .

Quantitative Analysis of Stall of Replicating DNA Polymerase by G-Quadruplex Formation.

N. Sugimoto, Shuntaro Takahashi, 2019, Methods in molecular biology.

Monomorphic RNA G-quadruplex and polymorphic DNA G-quadruplex structures responding to cellular environmental factors.

N. Sugimoto, D. Miyoshi, S. Saxena, 2010, Biochemistry.

Loop nucleotides impact the stability of intrastrand i-motif structures at neutral pH.

N. Sugimoto, Taiga Fujii, 2015, Physical chemistry chemical physics : PCCP.

Triple-Helix and Double-Helix Formations of Octamers of Deoxyriboadenylic and Deoxyribothymidylic Acids

N. Sugimoto, M. Sasaki, Y. Shintani, 1991 .

Ab initio MO calculations of model molecules for ribozyme reaction including an Mg2+ ion

N. Sugimoto, H. Nakatsuji, M. Sasaki, 1991 .

Mirror-Image Dependence: Targeting Enantiomeric G-Quadruplex DNA Using Triplex Metallohelices.

N. Sugimoto, J. Ren, Chuanqi Zhao, 2018, Angewandte Chemie.

Mirror-Image Dependence: Targeting Enantiomeric G-Quadruplex DNA Using Triplex Metallohelices.

N. Sugimoto, X. Qu, J. Ren, 2018, Angewandte Chemie.

Crowding Shifts the FMN Recognition Mechanism of Riboswitch Aptamer from Conformational Selection to Induced Fit.

N. Sugimoto, Ambadas Rode, T. Endoh, 2018, Angewandte Chemie.

Effect of locked nucleic acid modifications on the thermal stability of noncanonical DNA structure.

N. Sugimoto, S. Nakano, S. Maiti, 2011, Biochemistry.

Influences of Molecular Crowding on the Properties and Functions of Biomolecules

N. Sugimoto, S. Nakano, 2006 .

Effects of background anionic compounds on the activity of the hammerhead ribozyme in Mg2+-unsaturated solutions

N. Sugimoto, S. Nakano, D. Miyoshi, 2015, JBIC Journal of Biological Inorganic Chemistry.

Molecular crowding regulates the structural switch of the DNA G-quadruplex.

N. Sugimoto, A. Nakao, D. Miyoshi, 2002, Biochemistry.

Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions.

N. Sugimoto, D. Miyoshi, H. Karimata, 2006, Journal of the American Chemical Society.

Cladogenetic Orthogonal Light-Up Aptamers for Simultaneous Detection of Multiple Small Molecules in Cells.

N. Sugimoto, Shuo-Bin Chen, Jia-Heng Tan, 2022, Analytical chemistry.

Conformational changes of the phenyl and naphthyl isocyanate-DNA adducts during DNA replication and by minor groove binding molecules

N. Sugimoto, S. Nakano, M. Fujii, 2013, Nucleic acids research.

Base-pairing selectivity of a ureido-linked phenyl-2'-deoxycytidine derivative.

N. Sugimoto, S. Nakano, M. Fujii, 2012, Organic & biomolecular chemistry.

Large stabilization of a DNA duplex by the deoxyadenosine derivatives tethering an aromatic hydrocarbon group.

N. Sugimoto, S. Nakano, M. Fujii, 2003, Journal of the American Chemical Society.

Conformational flexibility influences degree of hydration of nucleic acid hybrids.

N. Sugimoto, S. Nagatoishi, Jhimli Bhattacharyya, 2011, The journal of physical chemistry. B.

Effects of molecular crowding on the structures, interactions, and functions of nucleic acids.

N. Sugimoto, S. Nakano, D. Miyoshi, 2014, Chemical reviews.

In vitro selection of aptamers that act with Zn2+.

N. Sugimoto, J. Kawakami, H. Imanaka, 2000, Journal of inorganic biochemistry.

Methyl substitution regulates the enantioselectivity of supramolecular complex binding to human telomeric G-quadruplex DNA.

N. Sugimoto, X. Qu, J. Ren, 2014, Chemistry.

Characterization and thermodynamic properties of quadruplex/duplex competition

N. Sugimoto, Wei Li, Peng Wu, 2002, FEBS letters.

Artificial G-wire switch with 2,2'-bipyridine units responsive to divalent metal ions.

N. Sugimoto, Kazuya Koumoto, D. Miyoshi, 2007, Journal of the American Chemical Society.

Design and Properties of Ligand-Conjugated Guanine Oligonucleotides for Recovery of Mutated G-Quadruplexes

N. Sugimoto, B. Kim, B. Chelobanov, 2018, Molecules.

Dehydration from conserved stem regions is fundamental for ligand-dependent conformational transition of the adenine-specific riboswitch.

N. Sugimoto, Kentaro Murakami, Vinit Kumar, 2012, Chemical communications.

Double-Helix Melting of Octamers of Deoxyriboadenylic and Deoxyribothymidylic Acids in the Presence of Ethidium

Naoki Sugimoto, Muneo Sasaki, N. Sugimoto, 1991 .

New Modified Deoxythymine with Dibranched Tetraethylene Glycol Stabilizes G-Quadruplex Structures

N. Sugimoto, T. Muraoka, K. Kinbara, 2020, Molecules.

Newly characterized interaction stabilizes DNA structure: oligoethylene glycols stabilize G-quadruplexes CH–π interactions

N. Sugimoto, S. Nakano, J. Plavec, 2017, Nucleic acids research.

Site-selective RNA cleavage by DNA bearing a base pair-mimic nucleoside.

N. Sugimoto, S. Nakano, M. Fujii, 2005, Journal of the American Chemical Society.

Anionic phthalocyanines targeting G-quadruplexes and inhibiting telomerase activity in the presence of excessive DNA duplexes.

N. Sugimoto, D. Miyoshi, T. Murashima, 2010, Chemical communications.

Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations

N. Sugimoto, J. Plavec, Shigenori Tanaka, 2018, Nucleic acids research.

Noncanonical structures and their thermodynamics of DNA and RNA under molecular crowding: beyond the Watson-Crick double helix.

N. Sugimoto, 2014, International review of cell and molecular biology.

Chemical Biology of Double Helical and Non-Double Helical Nucleic Acids: “To B or Not To B, That Is the Question”

N. Sugimoto, Shuntaro Takahashi, T. Endoh, 2021, Bulletin of the Chemical Society of Japan.

Molecular crowding induces primer extension by RNA polymerase through base stacking beyond Watson–Crick rules

N. Sugimoto, Saptarshi Ghosh, Shuntaro Takahashi, 2020, RSC advances.

Isolation of a Yellowish Antibiotic Pigment 4-hydroxy Nitrobenzene from a Strain of Streptomyces

N. Sugimoto, M. Gafur, Z. Sathi, 2002 .

Effects of trimethylamine N-oxide and urea on DNA duplex and G-quadruplex

N. Sugimoto, A. Maruyama, S. Nakano, 2016, Science and technology of advanced materials.

Facilitation of RNA enzyme activity in the molecular crowding media of cosolutes.

N. Sugimoto, S. Nakano, Y. Kitagawa, 2009, Journal of the American Chemical Society.

Chemical biology of non-canonical structures of nucleic acids for therapeutic applications.

N. Sugimoto, H. Tateishi-Karimata, 2020, Chemical communications.

Signalling aptamer optimization through selection using RNA-capturing microsphere particles.

N. Sugimoto, T. Endoh, 2020, Analytical chemistry.

The structural stability and catalytic activity of DNA and RNA oligonucleotides in the presence of organic solvents

N. Sugimoto, S. Nakano, 2016, Biophysical Reviews.

Identification of unknown substances in food contact polystyrene

N. Sugimoto, Y. Kawamura, Y. Takeda, 1998 .

Structural competition involving G-quadruplex DNA and its complement.

N. Sugimoto, S. Nakano, D. Miyoshi, 2003, Biochemistry.

Conformation and the sodium ion condensation on DNA and RNA structures in the presence of a neutral cosolute as a mimic of the intracellular media.

N. Sugimoto, M. Kuwahara, H. Sawai, 2008, Molecular bioSystems.

Thermodynamic Analysis of Duplex Formation of the Heterochiral DNA with l-Deoxyadenosine

N. Sugimoto, J. Kawakami, K. Tsujita, 2005, Analytical sciences : the international journal of the Japan Society for Analytical Chemistry.

DNA-based biosensor for monitoring pH in vitro and in living cells.

Naoki Sugimoto, Daisuke Miyoshi, N. Sugimoto, 2005, Biochemistry.

Effect of divalent cations and cytosine protonation on thermodynamic properties of intermolecular DNA double and triple helices.

N. Sugimoto, H. Hara, Y. Kawamoto, 2002, Journal of inorganic biochemistry.

RNA/DNA hybrid duplexes with identical nearest‐neighbor base‐pairs have identical stability

N. Sugimoto, S. Nakano, M. Katoh, 1994, FEBS letters.

Triplex-forming PNA modified with unnatural nucleobases: the role of protonation entropy in RNA binding.

N. Sugimoto, E. Rozners, T. Endoh, 2016, Physical chemistry chemical physics : PCCP.

Organelle-mimicking liposome dissociates G-quadruplexes and facilitates transcription

N. Sugimoto, H. Tateishi-Karimata, S. Pramanik, 2014, Nucleic acids research.

Thermodynamic stability of base pairs between 2-hydroxyadenine and incoming nucleotides as a determinant of nucleotide incorporation specificity during replication.

N. Sugimoto, J. Kawakami, H. Kamiya, 2001, Nucleic acids research.

Effects of metal ions and cosolutes on G-quadruplex topology.

N. Sugimoto, J. Plavec, Taiga Fujii, 2017, Journal of inorganic biochemistry.

Roles of non-canonical structures of nucleic acids in cancer and neurodegenerative diseases

N. Sugimoto, H. Tateishi-Karimata, 2021, Nucleic acids research.

Use of Nucleic Acid Analogs for the Study of Nucleic Acid Interactions

N. Sugimoto, S. Nakano, M. Fujii, 2011, Journal of nucleic acids.

pH and cation effects on the properties of parallel pyrimidine motif DNA triplexes.

N. Sugimoto, H. Hara, N Sugimoto, 2001, Biochemistry.

Quantitative Analyses of Nucleic Acid Stability Under the Molecular Crowding Condition Induced by Cosolutes

N. Sugimoto, S. Nakano, H. Tateishi-Karimata, 2013, Current protocols in nucleic acid chemistry.

Thrombin binding aptamer G-quadruplex stabilized by pyrene-modified nucleotides

N. Sugimoto, J. Plavec, Shuntaro Takahashi, 2020, Nucleic acids research.

DNA base flipping by a base pair-mimic nucleoside

N. Sugimoto, S. Nakano, M. Fujii, 2005, Nucleic acids research.

Nucleic Acid Aptamers as Molecular Tags for Omics Analyses Involving Sequencing

N. Sugimoto, M. Kuwahara, 2012 .

Nucleic acid duplex stability: influence of base composition on cation effects.

N. Sugimoto, S. Nakano, H. Hara, 1999, Nucleic acids research.

Effect of Pressure on Thermal Stability of G-Quadruplex DNA and Double-Stranded DNA Structures

N. Sugimoto, Shuntaro Takahashi, 2013, Molecules.

Improved nearest-neighbor parameters for the stability of RNA/DNA hybrids under a physiological condition

N. Sugimoto, Saptarshi Ghosh, Shuntaro Takahashi, 2020, Nucleic acids research.

HIGH-PRESSURE STOPPED-FLOW KINETICS OF PROTON-TRANSFER REACTION BETWEEN 4-NITROPHENYLNITROMETHANE AND 1,1′,3,3′-TETRAMETHYLGUANIDINE IN APROTIC SOLVENTS

N. Sugimoto, M. Sasaki, J. Ōsugi, 1980 .

Thermal Stability of RNA Structures with Bulky Cations in Mixed Aqueous Solutions.

N. Sugimoto, S. Nakano, Yuichi Tanino, 2016, Biophysical journal.

Effects of Cosolvents on the Folding and Catalytic Activities of the Hammerhead Ribozyme

N. Sugimoto, S. Nakano, D. Miyoshi, 2015, Chembiochem : a European journal of chemical biology.

Dimerization of nucleic acid hairpins in the conditions caused by neutral cosolutes.

N. Sugimoto, S. Nakano, D. Miyoshi, 2012, The journal of physical chemistry. B.

Improved Parameters for Prediction of RNA Secondary Structure and Insights into why RNA forms Double Helixes

D. Turner, S. Freier, R. Kierzek, 1986 .

Substituent effects on proton tunnelling. Reaction between 2,4,6-trinitrotoluene and 1-substituted piperidines in acetonitrile

N. Sugimoto, M. Sasaki, 1985 .

Characterization of Intracellular Crowding Environments with Topology-Based DNA Quadruplex Sensors.

N. Sugimoto, M. Kinjo, Akira Kitamura, 2019, Analytical chemistry.

Molecular crowding effects on structure and stability of DNA.

N. Sugimoto, D. Miyoshi, 2008, Biochimie.

Chemical Modulation of DNA Replication along G-Quadruplex Based on Topology-Dependent Ligand Binding.

N. Sugimoto, J. Plavec, A. Kotar, 2021, Journal of the American Chemical Society.

Stabilization of DNA Loop Structures by Large Cations.

N. Sugimoto, S. Nakano, Yuichi Tanino, 2019, The journal of physical chemistry. B.

Volumetric contributions of loop regions of G-quadruplex DNA to the formation of the tertiary structure.

N. Sugimoto, Shuntaro Takahashi, 2017, Biophysical chemistry.

Real-time monitoring of DNA hybridization kinetics on living cell surfaces.

N. Sugimoto, Ambadas Rode, Shuntaro Takahashi, 2013, Chemical communications.

Thermodynamics-hydration relationships within loops that affect G-quadruplexes under molecular crowding conditions.

N. Sugimoto, S. Nakano, D. Miyoshi, 2013, The journal of physical chemistry. B.

Molecular crowding and hydration regulating of G-quadruplex formation.

N. Sugimoto, D. Miyoshi, Takeshi Fujimoto, 2013, Topics in current chemistry.

The Effects of Molecular Crowding on the Structure and Stability of G-Quadruplexes with an Abasic Site

N. Sugimoto, S. Nakano, D. Miyoshi, 2011, Journal of nucleic acids.

Loop residues of thrombin-binding DNA aptamer impact G-quadruplex stability and thrombin binding.

N. Sugimoto, K. Tsumoto, S. Nagatoishi, 2011, Biochimie.

New Insights into the Functions of Nucleic Acids Controlled by Cellular Microenvironments

N. Sugimoto, Saki Matsumoto, 2021, Topics in Current Chemistry.

Thermodynamic stability of Hoogsteen and Watson-Crick base pairs in the presence of histone H3-mimicking peptide.

N. Sugimoto, S. Nakano, J. Matsui, 2011, Chemical communications.

Hydration of Watson-Crick base pairs and dehydration of Hoogsteen base pairs inducing structural polymorphism under molecular crowding conditions.

N. Sugimoto, T. Ohmichi, D. Miyoshi, 2009, Journal of the American Chemical Society.

Drastic effect of a single base difference between human and tetrahymena telomere sequences on their structures under molecular crowding conditions.

Naoki Sugimoto, Daisuke Miyoshi, N. Sugimoto, 2005, Angewandte Chemie.

Real-Time Monitoring of G-Quadruplex Formation during Transcription.

N. Sugimoto, M. Kuwahara, Ambadas Rode, 2016, Analytical chemistry.

Phthalocyanines: a new class of G-quadruplex-ligands with many potential applications.

N. Sugimoto, D. Miyoshi, T. Murashima, 2012, Chemical communications.

C-Rich Sequence in a Non-Template DNA Strand Regulates Structure Change of G-Quadruplex in a Template Strand during Transcription

N. Sugimoto, H. Tateishi-Karimata, Ye Teng, 2019, Bulletin of the Chemical Society of Japan.

G‐Quadruplexes with Tetra(ethylene glycol)‐Modified Deoxythymidines are Resistant to Nucleases and Inhibit HIV‐1 Reverse Transcriptase

N. Sugimoto, T. Muraoka, K. Kinbara, 2016, Chembiochem : a European journal of chemical biology.

Translational halt during elongation caused by G-quadruplex formed by mRNA.

N. Sugimoto, T. Endoh, Yu Kawasaki, 2013, Methods.

Suppression of gene expression by G-quadruplexes in open reading frames depends on G-quadruplex stability.

N. Sugimoto, T. Endoh, Yu Kawasaki, 2013, Angewandte Chemie.

Stability of RNA quadruplex in open reading frame determines proteolysis of human estrogen receptor α

N. Sugimoto, T. Endoh, Yu Kawasaki, 2013, Nucleic acids research.

Destabilization of DNA G-Quadruplexes by Chemical Environment Changes during Tumor Progression Facilitates Transcription.

N. Sugimoto, K. Kawauchi, H. Tateishi-Karimata, 2018, Journal of the American Chemical Society.

Incorporation of O(6)-methylguanine restricts the conformational conversion of the human telomere G-quadruplex under molecular crowding conditions.

N. Sugimoto, X. Qu, J. Ren, 2016, Chemical communications.

Duplex dissociation of telomere DNAs induced by molecular crowding.

N. Sugimoto, S. Nakano, D. Miyoshi, 2004, Journal of the American Chemical Society.

Reversible stability switching of a hairpin DNA via a photo-responsive linker unit.

N. Sugimoto, Kazuya Koumoto, Li Wu, 2009, Chemical communications.

Free Energy Increments for Hydrogen Bonds in Nucleic Acid Base Pairs.

Naoki Sugimoto, Douglas H. Turner, D. Turner, 1987 .

Stabilization of three-way junctions of DNA under molecular crowding conditions.

N. Sugimoto, D. Miyoshi, S. Muhuri, 2009, Journal of the American Chemical Society.

Mechanical insights into ribosomal progression overcoming RNA G-quadruplex from periodical translation suppression in cells

Naoki Sugimoto, N. Sugimoto, Tamaki Endoh, 2016, Scientific Reports.

Nucleobase-Modified PNA Suppresses Translation by Forming a Triple Helix with a Hairpin Structure in mRNA In Vitro and in Cells.

N. Sugimoto, E. Rozners, T. Endoh, 2016, Angewandte Chemie.

Modulation of Ribozyme and Deoxyribozyme Activities Using Tetraalkylammonium Ions.

N. Sugimoto, S. Nakano, Takaaki Watabe, 2017, Chemphyschem : a European journal of chemical physics and physical chemistry.

Catalytic Activities of Ribozymes and DNAzymes in Water and Mixed Aqueous Media

N. Sugimoto, S. Nakano, M. Horita, 2017 .

Bisubstrate Function of RNA Polymerases Triggered by Molecular Crowding Conditions.

N. Sugimoto, Shuntaro Takahashi, Hiromichi Okura, 2019, Biochemistry.

Model studies of the effects of intracellular crowding on nucleic acid interactions.

N. Sugimoto, S. Nakano, 2016, Molecular bioSystems.

Dangling Ends Perturb the Stability of RNA Duplexes Responsive to Surrounding Conditions

N. Sugimoto, S. Nakano, D. Miyoshi, 2014, ChemMedChem.

Hydration changes upon DNA folding studied by osmotic stress experiments.

N. Sugimoto, S. Nakano, D. Miyoshi, 2012, Biophysical journal.

The yields of transcripts for a RNA polymerase regulated by hairpin structures in nascent RNAs.

N. Sugimoto, S. Nagatoishi, Ryoya Ono, 2012, Chemical communications.

Conformational Dynamics of mRNA in Gene Expression as New Pharmaceutical Target.

N. Sugimoto, T. Endoh, 2017, Chemical record.

Thermodynamics-structure relationship of single mismatches in RNA/DNA duplexes.

N. Sugimoto, S. Nakano, M. Nakano, 2000, Biochemistry.

Unusual -1 ribosomal frameshift caused by stable RNA G-quadruplex in open reading frame.

N. Sugimoto, T. Endoh, 2013, Analytical chemistry.

Specific Light-Up System for Protein and Metabolite Targets Triggered by Initiation Complex Formation

N. Sugimoto, Yasuyo Nakajima, M. Yamada, 2017, Scientific Reports.

tRNA Shifts the G-quadruplex-Hairpin Conformational Equilibrium in RNA towards the Hairpin Conformer.

N. Sugimoto, Ambadas Rode, T. Endoh, 2016, Angewandte Chemie.

A mRNA-Responsive G-Quadruplex-Based Drug Release System

Naoki Sugimoto, Takashi Murashima, Daisuke Miyoshi, 2015, Sensors.

Study on effects of molecular crowding on G-quadruplex-ligand binding and ligand-mediated telomerase inhibition.

N. Sugimoto, S. Nakano, D. Miyoshi, 2013, Methods.

Specific Binding of Anionic Porphyrin and Phthalocyanine to the G-Quadruplex with a Variety of in Vitro and in Vivo Applications

N. Sugimoto, D. Miyoshi, T. Murashima, 2012, Molecules.

Hydroxyl groups in cosolutes regulate the G-quadruplex topology of telomeric DNA.

N. Sugimoto, S. Nakano, D. Miyoshi, 2020, Biochemical and Biophysical Research Communications - BBRC.

A Novel Stable RNA Pentaloop that Interacts Specifically with A Motif Peptide of Lambda-N Protein

N. Sugimoto, J. Kawakami, H. Tokitoh, 2006, Nucleosides, nucleotides & nucleic acids.

i-Motifs are more stable than G-quadruplexes in a hydrated ionic liquid.

N. Sugimoto, M. Nakano, H. Tateishi-Karimata, 2015, Chemical communications.

Reduced graphene oxide upconversion nanoparticle hybrid for electrochemiluminescent sensing of a prognostic indicator in early-stage cancer.

Xiaogang Qu, Jiasi Wang, Naoki Sugimoto, 2014, Small.

Hydration Regulates The Thermodynamic Stability Of Dna Structures Under Molecular Crowding Conditions

N. Sugimoto, D. Miyoshi, H. Karimata, 2007, Nucleosides, nucleotides & nucleic acids.

Development of new functional nanostructures consisting of both DNA duplex and quadruplex.

N. Sugimoto, D. Miyoshi, Mamiko Inoue, 2010, Chemical communications.

Effect of divalent cations on antiparallel G‐quartet structure of d(G4T4G4)

N. Sugimoto, A. Nakao, D. Miyoshi, 2001, FEBS letters.

Cotranslational assembly imposes evolutionary constraints on homomeric proteins

S. Teichmann, M. Babu, N. Sugimoto, 2016, bioRxiv.

Design of allele‐specific primers and detection of the human ABO genotyping to avoid the pseudopositive problem

N. Sugimoto, H. Oka, S. Nakano, 2008, Electrophoresis.

Replication Control of Human Telomere G-Quadruplex DNA by G-Quadruplex Ligands Dependent on Solution Environment

N. Sugimoto, Shinobu Sato, S. Takenaka, 2022, Life.

Multiple and cooperative binding of fluorescence light-up probe thioflavin T with human telomere DNA G-quadruplex.

Takeshi Fujimoto, Naoki Sugimoto, Takashi Murashima, 2013, Biochemistry.

DNA tetraplex structure formation from human telomeric repeat motif (TTAGGG):(CCCTAA) in nanocavity water pools of reverse micelles.

N. Sugimoto, S. Nagatoishi, S. Pramanik, 2012, Chemical communications.

Volumetric analysis of formation of the complex of G-quadruplex DNA with hemin using high pressure.

N. Sugimoto, Sudipta Bhowmik, Shuntaro Takahashi, 2017, Journal of inorganic biochemistry.

Dielectricity of a molecularly crowded solution accelerates NTP misincorporation during RNA-dependent RNA polymerization by T7 RNA polymerase

N. Sugimoto, Shuntaro Takahashi, Saki Matsumoto, 2022, Scientific Reports.

Dielectricity of a molecularly crowded solution accelerates NTP misincorporation during RNA-dependent RNA polymerization by T7 RNA polymerase

N. Sugimoto, Shuntaro Takahashi, Saki Matsumoto, 2022, Scientific reports.

Structure, stability and behaviour of nucleic acids in ionic liquids

N. Sugimoto, H. Tateishi-Karimata, 2014, Nucleic acids research.

Validation of the nearest-neighbor model for Watson–Crick self-complementary DNA duplexes in molecular crowding condition

N. Sugimoto, Saptarshi Ghosh, Shuntaro Takahashi, 2019, Nucleic acids research.

Novel One-Tube-One-Step Real-Time Methodology for Rapid Transcriptomic Biomarker Detection: Signal Amplification by Ternary Initiation Complexes.

N. Sugimoto, M. Kuwahara, S. Tobita, 2016, Analytical chemistry.

Transcriptome screening followed by integrated physicochemical and structural analyses for investigating RNA-mediated berberine activity

N. Sugimoto, J. Plavec, Sagar Satpathi, 2021, Nucleic acids research.

Small‐Molecule‐Directed Assembly: A Gold Nanoparticle‐Based Strategy for Screening of Homo‐Adenine DNA Duplex Binders

N. Sugimoto, X. Qu, J. Ren, 2008 .

Recognition of a Flipped Base in a Hairpinloop DNA by a Small Peptide

N. Sugimoto, J. Kawakami, Yoshiatsu Tanabe, 2008, Nucleosides, nucleotides & nucleic acids.

In situ condensation of an anti-cancer drug into fibrin gel enabling effective inhibition of tumor cell growth.

N. Sugimoto, M. Kuwahara, Yasuyo Nakajima, 2019, Chemical communications.

Affinity of molecular ions for DNA structures is determined by solvent-accessible surface area.

N. Sugimoto, M. Nakano, H. Tateishi-Karimata, 2014, The journal of physical chemistry. B.

Thermodynamic properties of water molecules in the presence of cosolute depend on DNA structure: a study using grid inhomogeneous solvation theory

N. Sugimoto, F. Tama, O. Miyashita, 2015, Nucleic acids research.

Nearest-neighbor parameters for predicting DNA duplex stability in diverse molecular crowding conditions

N. Sugimoto, Saptarshi Ghosh, Shuntaro Takahashi, 2020, Proceedings of the National Academy of Sciences.

α-β Structural Transition of Short Oligopeptides by Water/Organic Solvent Titration

N. Sugimoto, D. Miyoshi, J. Zou, 1999 .

Stability of XGCGCp, GCGCYp, and XGCGCYp helixes: an empirical estimate of the energetics of hydrogen bonds in nucleic acids.

D. Turner, S. Freier, R. Kierzek, 1986, Biochemistry.

Conformational Dynamics of the RNA G-Quadruplex and its Effect on Translation Efficiency

N. Sugimoto, T. Endoh, 2019, Molecules.

Artificial turn-on riboswitch to control target gene expression using a wild-type riboswitch splicing mechanism.

N. Sugimoto, D. Miyoshi, T. Kubodera, 2020, Journal of bioscience and bioengineering.

Development and Application of a Highly Efficient Protein Synthesis Technique Using Riboswitches in Microorganisms

N. Sugimoto, T. Yamauchi, 2018 .

Aptamer‐Based Universal Fluorometric Sensors Based on Allosteric Modulation of RNA–Peptide Interactions

N. Sugimoto, T. Endoh, 2014, ChemMedChem.

Riboswitches for Enhancing Target Gene Expression in Eukaryotes

N. Sugimoto, A. Nishimura, D. Miyoshi, 2008, Chembiochem : a European journal of chemical biology.

Roles of Mg2+ in TPP‐dependent riboswitch

Akira Nishimura, Naoki Sugimoto, Daisuke Miyoshi, 2005, FEBS letters.

Correction to ‘Improved nearest-neighbor parameters for the stability of RNA/DNA hybrids under a physiological condition’

N. Sugimoto, Saptarshi Ghosh, Shuntaro Takahashi, 2021, Nucleic acids research.

Effect of Potassium Concentration on Triplex Stability under Molecular Crowding Conditions

N. Sugimoto, H. Tateishi-Karimata, T. Ohyama, 2020, Molecules.

Molecular crowding of the cosolutes induces an intramolecular i-motif structure of triplet repeat DNA oligomers at neutral pH.

Naoki Sugimoto, Arivazhagan Rajendran, N. Sugimoto, 2010, Chemical communications.

Temperature dependence of thermodynamic properties for DNA/DNA and RNA/DNA duplex formation.

Naoki Sugimoto, N. Sugimoto, S. Nakano, 2002, European journal of biochemistry.

Biological and nanotechnological applications using interactions between ionic liquids and nucleic acids

N. Sugimoto, H. Tateishi-Karimata, 2018, Biophysical Reviews.

DNA sensor's selectivity enhancement and protection from contaminating nucleases due to a hydrated ionic liquid.

N. Sugimoto, H. Tateishi-Karimata, S. Pramanik, 2015, The Analyst.

Comparable Stability of Hoogsteen and Watson–Crick Base Pairs in Ionic Liquid Choline Dihydrogen Phosphate

N. Sugimoto, M. Nakano, H. Tateishi-Karimata, 2014, Scientific Reports.

Effects of Ionic Liquid and Liposomes on the Structure, Stability, and Function of Nucleic Acids

N. Sugimoto, 2014 .

Influence of alpha-deoxyadenosine on the stability and structure of DNA. Thermodynamic and molecular mechanics studies.

N. Sugimoto, H. Nakamuta, M. Sasaki, 1995, Biochemistry.

A Turn-On Detection of DNA Sequences by Means of Fluorescence of DNA-Templated Silver Nanoclusters via Unique Interactions of a Hydrated Ionic Liquid

N. Sugimoto, H. Tateishi-Karimata, Ye Teng, 2018, Molecules.

Application of the Thermodynamic Parameters of DNA Stability Prediction to Double-Helix Formation of Deoxyribooligonucleotides

Naoki Sugimoto, Kei-ichi Honda, Muneo Sasaki, 1994 .

Choline ion interactions with DNA atoms explain unique stabilization of A-T base pairs in DNA duplexes: a microscopic view.

N. Sugimoto, M. Nakano, H. Tateishi-Karimata, 2014, The journal of physical chemistry. B.

A-T base pairs are more stable than G-C base pairs in a hydrated ionic liquid.

Naoki Sugimoto, Hisae Tateishi-Karimata, N. Sugimoto, 2012, Angewandte Chemie.

SPR sensor chip for detection of small molecules using molecularly imprinted polymer with embedded gold nanoparticles.

Noriaki Hara, Naoki Sugimoto, Katsuyuki Tamaki, 2005, Analytical chemistry.

Roles of the Amino Group of Purine Bases in the Thermodynamic Stability of DNA Base Pairing

N. Sugimoto, S. Nakano, 2014, Molecules.

Regulation of telomerase activity by the thermodynamic stability of a DNA x RNA hybrid.

N. Sugimoto, D. Miyoshi, Hai-qing Yu, 2008, Angewandte Chemie.

Role of Nd3+ and Pb2+ on the RNA cleavage reaction by a small ribozyme.

N. Sugimoto, T. Ohmichi, 1997, Biochemistry.

DNA recognition of a 24-mer peptide derived from RecA protein.

N. Sugimoto, 2000, Biopolymers.

Single-Stranded DNA Recognition of a 24-mer Peptide Derived from RecA Protein

N. Sugimoto, S. Nakano, 1998 .

A 24 mer peptide derived from RecA protein can discriminate a single-stranded DNA from a double-stranded DNA

N. Sugimoto, S. Nakano, 1997 .

A 24 mer peptide with activities of discrimination and recombination of nucleic acids

N. Sugimoto, S. Nakano, 1999 .

Structural and Functional Characterization of RecG Helicase under Dilute and Molecular Crowding Conditions

N. Sugimoto, S. Nagatoishi, D. Miyoshi, 2012, Journal of nucleic acids.

Effect of metal ions and sequence of deoxyribozymes on their RNA cleavage activity

N. Sugimoto, T. Ohmichi, Y. Okumoto, 1999 .

Roles of 2′-Hydroxyls of Leadzyme on an RNA Cleavage

N. Sugimoto, T. Ohmichi, 1997 .

Kinetic study of proton tunneling in the reaction between 2,4,6-trinitrotoluene and 1,8-diazabicyclo[5.4.0]-undec-7-ene in benzonitrile

N. Sugimoto, M. Sasaki, J. Ōsugi, 1984 .

Utilization of Salmon Milt DNA Against UV Damage

N. Sugimoto, D. Miyoshi, Y. Sasaki, 2010, Applied biochemistry and biotechnology.

Cotranslational protein assembly imposes evolutionary constraints on homomeric proteins

S. Teichmann, M. Babu, N. Sugimoto, 2018, Nature Structural & Molecular Biology.

Neuronal differentiation of neural progenitor cells by intracellular delivery of synthetic oligopeptide derived from Von Hippel-Lindau protein.

N. Sugimoto, S. Nakano, H. Kanno, 2009, Protein and peptide letters.

Measurements of the binding of a large protein using a substrate density-controlled DNA chip.

N. Sugimoto, S. Nakano, D. Miyoshi, 2011, Analytical chemistry.

RNA G-quadruplexes facilitate RNA accumulation in G-rich repeat expansions.

N. Sugimoto, H. Tateishi-Karimata, Ye Teng, 2020, Biochemistry.

Pressure Effect on Rate Constants of Proton-transfer Reactions from 2,4,6-Trinitrotoluene to N,N,N′,N′-Tetramethylguanidine and 1,8-Diazabicyclo[5.4.0]undec-7-ene in Acetonitrile and Dichloromethane

N. Sugimoto, M. Sasaki, J. Ōsugi, 1981 .

Aptamer carbon nanodot sandwich used for fluorescent detection of protein.

N. Sugimoto, X. Qu, J. Ren, 2012, The Analyst.

In vitro selection of aptamers that recognize a monosaccharide

N. Sugimoto, J. Kawakami, Y. Kawase, 1998 .

Through-bond effects in the ternary complexes of thrombin sandwiched by two DNA aptamers

N. Sugimoto, K. Tsumoto, F. Sica, 2016, Nucleic acids research.

Enhanced amplification of polymerase chain reaction by addition of cosolutes derived from a cellular compatible solute.

N. Sugimoto, Kazuya Koumoto, Hirofumi Ochiai, 2008, Nucleic Acids Symposium Series.

G-quartet, G-quadruplex, and G-wire regulated by chemical stimuli.

N. Sugimoto, D. Miyoshi, 2011, Methods in molecular biology.

Stabilization energy of the catalytic core of the Tetrahymena ribozyme

N. Sugimoto, M. Sasaki, 1991 .

Watson-Crick versus Hoogsteen Base Pairs: Chemical Strategy to Encode and Express Genetic Information in Life.

N. Sugimoto, Shuntaro Takahashi, 2021, Accounts of chemical research.

Hydration is Required in DNA G‐Quadruplex–Protein Binding

N. Sugimoto, K. Tsumoto, S. Nagatoishi, 2011, Chembiochem : a European journal of chemical biology.

Dissecting the contribution of thrombin exosite I in the recognition of thrombin binding aptamer

N. Sugimoto, F. Sica, A. Merlino, 2013, The FEBS journal.

Detection of porphyrin using a short peptide immobilized on a surface plasmon resonance sensor chip.

N. Sugimoto, J. Miyake, N Sugimoto, 2001, Biosensors & bioelectronics.

Structural and Affinity Analyses of G-Quadruplex DNA Aptamers for Camptothecin Derivatives

N. Sugimoto, H. Ozaki, M. Kuwahara, 2013, Pharmaceuticals.

Biological and nanotechnological applications using interactions between ionic liquids and nucleic acids

N. Sugimoto, H. Tateishi-Karimata, 2018, Biophysical Reviews.

A role of the Trp–His interaction in the conformational switch between α-helix and β-sheet in short alanine-based peptides

N. Sugimoto, J. Zou, 2000 .

Structural foundation for DNA behavior in hydrated ionic liquid: An NMR study.

N. Sugimoto, J. Plavec, M. Marušič, 2015, Biochimie.

Central Dogma for a Molecular Design Based on DNA: DNB (Databasing/Designable Nanobio) → ENB (Engineering Nanobio) → FNB (Functional Nanobio)

N. Sugimoto, S. Nakano, 2005 .

Preferential targeting cancer-related i-motif DNAs by the plant flavonol fisetin for theranostics applications

N. Sugimoto, Saptarshi Ghosh, Sudipta Bhowmik, 2020, Scientific Reports.

Gene Regulation System with an Artificial RNA Switch Operating in Human Cells

N. Sugimoto, T. Endoh, 2011, Chembiochem : a European journal of chemical biology.

Sequence dependence for the energetics of dangling ends and terminal base pairs in ribonucleic acid.

D. Turner, R. Kierzek, N. Sugimoto, 1987, Biochemistry.

Interaction of water with the G-quadruplex loop contributes to the binding energy of G-quadruplex to protein.

N. Sugimoto, S. Nagatoishi, 2012, Molecular bioSystems.

Influence of Pressure on Primary Kinetic Isotope Effects of the Proton-Transfer Reaction between 4-Nitrophenyl-nitromethane and 1, 1', 3, 3'-Tetramethylguanidine in Toluene and Dichloromethane (Commemoration Issue Dedicated to Professor Yoshimasa Takezaki on the Occasion of his Retirement)

N. Sugimoto, J. Ōsugi, Muneo Sakaki, 1981 .

Structural transition of d(G4T4G4) from antiparallel to parallel G-quartet induced by divalent cations.

N. Sugimoto, A. Nakao, D. Miyoshi, 2001, Nucleic acids research. Supplement.

Effects of Modifying Thioflavin T at the N3-Position on Its G4 Binding and Fluorescence Emission

N. Sugimoto, Hiroto Fujita, T. Endoh, 2020, Molecules.

Effects of Polyethylene Glycol on DNA Duplex Stability at Different NaCl Concentrations

N. Sugimoto, S. Nakano, H. Karimata, 2007 .

Influence of cationic molecules on the hairpin to duplex equilibria of self-complementary DNA and RNA oligonucleotides

N. Sugimoto, M. Kuwahara, H. Sawai, 2006, Nucleic acids research.

Quartz crystal microbalance sensor targeting low molecular weight compounds using oligopeptide binder and peptide-immobilized latex beads

C. Nakamura, N. Sugimoto, J. Miyake, 2002 .

Key Tertiary Interactions in FMN Riboswitch Aptamers Required for Ligand Binding

N. Sugimoto, Ambadas Rode, T. Endoh, 2015 .

Tuning riboswitch-mediated gene regulation by rational control of aptamer ligand binding properties.

Naoki Sugimoto, N. Sugimoto, Ambadas Rode, 2015, Angewandte Chemie.

Drastic stability change of X-X mismatch in d(CXG) trinucleotide repeat disorders under molecular crowding condition.

N. Sugimoto, H. Tateishi-Karimata, T. Ohyama, 2018, Biochemical and biophysical research communications.

Positional effect of single bulge nucleotide on PNA(peptide nucleic acid)/DNA hybrid stability.

N. Sugimoto, K. Yamamoto, N. Satoh, 1999, Nucleic acids symposium series.

Comparison of thermodynamic stabilities between PNA (peptide nucleic acid)/DNA hybrid duplexes and DNA/DNA duplexes.

N. Sugimoto, K. Yamamoto, N. Satoh, 1999, Nucleic acids symposium series.

Effects of substrate structure on the kinetics of circle opening reactions of the self-splicing intervening sequence from Tetrahymena thermophila: evidence for substrate and Mg2+ binding interactions.

D. Turner, R. Kierzek, N. Sugimoto, 1989, Nucleic acids research.

Kinetics for reaction of a circularized intervening sequence with CU, UCU, CUCU, and CUCUCU: mechanistic implications from the dependence on temperature and on oligomer and Mg2+ concentrations.

D. Turner, R. Kierzek, N. Sugimoto, 1988, Biochemistry.

Efficacy of base-modification on target binding of small molecule DNA aptamers.

N. Sugimoto, H. Ozaki, M. Kuwahara, 2013, Journal of the American Chemical Society.

Complexation of peptide with Cu2+ responsible to inducing and enhancing the formation of α-helix conformation

N. Sugimoto, J. Zou, 2000, Biometals.

Sequence and solvent effects on telomeric DNA bimolecular G-quadruplex folding kinetics.

N. Sugimoto, D. Miyoshi, Adrien Marchand, 2013, The journal of physical chemistry. B.

Molecularly imprinted nanocomposites for highly sensitive SPR detection of a non-aqueous atrazine sample.

N. Sugimoto, J. Matsui, K. Akamatsu, 2009, The Analyst.

Capture of cationic ligands bound diffusely to base pairs during DNA refolding.

N. Sugimoto, S. Nakano, Toshimasa Kirihata, 2008, Chemical communications.

RNA-Capturing Microsphere Particles (R-CAMPs) for Optimization of Functional Aptamers.

N. Sugimoto, T. Endoh, T. Ohyama, 2019, Small.

Mechanical force analysis of peptide interactions using atomic force microscopy.

C. Nakamura, N. Sugimoto, J. Miyake, 2004, Biopolymers.

Specific Light-Up System for Protein and Metabolite Targets Triggered by Initiation Complex Formation

N. Sugimoto, M. Kuwahara, Yasuyo Nakajima, 2017, Scientific Reports.

Choline Ions Stabilize A-T Base Pairs by Fitting into Minor Groove

Naoki Sugimoto, Miki Nakano, Shigenori Tanaka, 2015 .

Label-free colorimetric and quantitative detection of cancer marker protein using noncrosslinking aggregation of Au/Ag nanoparticles induced by target-specific peptide probe.

Li Wu, Xiaogang Qu, Naoki Sugimoto, 2011, Biosensors & bioelectronics.

Pressure Effect on the Folding of G-Quadruplex DNA Modified with Hexaethylene Glycol

N. Sugimoto, Shuntaro Takahashi, 2016 .

Regulation of DNA nucleases by molecular crowding

N. Sugimoto, D. Miyoshi, Y. Sasaki, 2007, Nucleic acids research.

Site‐specific cleavage reaction catalyzed by leadzyme is enhanced by combined effect of lead and rare earth ions

N. Sugimoto, T. Ohmichi, 1996, FEBS letters.

A DNA duplex with extremely enhanced thermal stability based on controlled immobilization on gold nanoparticles.

N. Sugimoto, S. Nakano, Y. Shibata, 2006, Nano letters.

Co-Transcriptional Molecular Assembly Results in a Kinetically Controlled Irreversible RNA Conformational Switch.

N. Sugimoto, T. Endoh, 2018, Analytical chemistry.

Cationic Porphyrin Induced a Telomeric DNA to G-Quadruplex Form in Water

N. Sugimoto, D. Miyoshi, T. Miyazawa, 2008, Bioinorganic chemistry and applications.

Selection of RNAs for Constructing “Lighting-UP” Biomolecular Switches in Response to Specific Small Molecules

N. Sugimoto, T. Endoh, 2013, PloS one.

A reversible B-A transition of DNA duplexes induced by synthetic cationic copolymers.

N. Sugimoto, A. Maruyama, S. Nakano, 2016, Chemical communications.

Ultrasensitive and Selective Detection of a Prognostic Indicator in Early‐Stage Cancer Using Graphene Oxide and Carbon Nanotubes

N. Sugimoto, Xiaohui Wang, Yujun Song, 2010 .

Structural Polymorphism of Telomeric DNA Regulated by pH and Divalent Cation

N. Sugimoto, D. Miyoshi, S. Matsumura, 2003, Nucleosides, nucleotides & nucleic acids.

Development of Functional Nucleic Acids and Peptides by Combinatorial Chemistry and Downsizing Methods

N. Sugimoto, 2000 .

Stabilization factors affecting duplex formation of peptide nucleic acid with DNA.

N. Sugimoto, S. Nakano, K. Yasuda, 2001, Biochemistry.

DNA G-quadruplex detection system employing a protein fibril ligand

N. Sugimoto, T. Nakabayashi, N. Ohta, 2015 .

Volumetric analysis of formation of the complex of G-quadruplex DNA with hemin using high pressure.

N. Sugimoto, Sudipta Bhowmik, Shuntaro Takahashi, 2017, Journal of inorganic biochemistry.

Loop nucleotides impact the stability of intrastrand i-motif structures at neutral pH.

N. Sugimoto, Taiga Fujii, 2015, Physical chemistry chemical physics : PCCP.

Transition characteristics and thermodynamic analysis of DNA duplex formation: a quantitative consideration for the extent of duplex association.

N. Sugimoto, P. Wu, 2000, Nucleic acids research.

Kinetic Property of Bulged Helix Formation: Analysis of Kinetic Behavior Using Nearest-Neighbor Parameters

Naoki Sugimoto, Hiroyuki Nakamuta, N. Sugimoto, 2000 .

Nearest-neighbor parameters for the prediction of RNA duplex stability in diverse in vitro and cellular-like crowding conditions

N. Sugimoto, Shuntaro Takahashi, T. Endoh, 2023, Nucleic acids research.

Structural switch of telomere DNA by pH and monovalent cation.

N. Sugimoto, D. Miyoshi, Mamiko Inoue, 2005, Nucleic acids symposium series.

Control of stability and structure of nucleic acids using cosolutes.

N. Sugimoto, Hisae Tateishi-Karimta, 2014, Methods.

Factors that contribute to efficient catalytic activity of a small Ca2+-dependent deoxyribozyme in relation to its RNA cleavage function.

Naoki Sugimoto, N. Sugimoto, Yasuhide Okumoto, 2003, Biochemistry.

Crowding Shifts the FMN Recognition Mechanism of Riboswitch Aptamer from Conformational Selection to Induced Fit.

N. Sugimoto, T. Endoh, Ambadas B. Rode, 2018, Angewandte Chemie.

The effect of the structure of cosolutes on the DNA duplex formation.

N. Sugimoto, S. Nakano, Xiao-Bo Gu, 2006, Nucleic Acids Symposium Series.

Relationship between catalytic activity and secondary structure of a hammerhead ribozyme: A study using thermodynamic parameters for RNA structure prediction

N. Sugimoto, M. Sasaki, A. Tanaka, 1993 .

In vitro assays predictive of telomerase inhibitory effect of G-quadruplex ligands in cell nuclei.

N. Sugimoto, D. Miyoshi, T. Murashima, 2014, The journal of physical chemistry. B.

A-T base pairs are more stable than G-C base pairs in a hydrated ionic liquid.

N. Sugimoto, H. Tateishi-Karimata, 2012, Angewandte Chemie.

Binding of a Fluorescent Oligonucleotide to a Circularized Intervening Sequence from Tetrahymena thermophila

D. Turner, R. Kierzek, N. Sugimoto, 1989 .