C. Rödelsperger

发表

System-wide Rewiring Underlies Behavioral Differences in Predatory and Bacterial-Feeding Nematodes

R. Sommer, Daniel J. Bumbarger, Metta Riebesell, 2013, Cell.

TCR Repertoire Analysis by Next Generation Sequencing Allows Complex Differential Diagnosis of T Cell–Related Pathology

P. Robinson, S. Mundlos, C. Rödelsperger, 2013, American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.

MutationTaster evaluates disease-causing potential of sequence alterations

Jana Marie Schwarz, D. Seelow, C. Rödelsperger, 2010, Nature Methods.

CYNTENATOR: Progressive Gene Order Alignment of 17 Vertebrate Genomes

C. Dieterich, C. Rödelsperger, 2010, PloS one.

Identity-by-descent filtering of exome sequence data identifies PIGV mutations in hyperphosphatasia mental retardation syndrome

Sebastian Bauer, Sebastian Köhler, Christian Rödelsperger, 2010, Nature Genetics.

A Developmental Switch Coupled to the Evolution of Plasticity Acts through a Sulfatase

Ralf J. Sommer, Christian Rödelsperger, R. Sommer, 2013, Cell.

DAF‐19/RFX controls ciliogenesis and influences oxygen‐induced social behaviors in Pristionchus pacificus

R. Sommer, Metta Riebesell, C. Rödelsperger, 2018, Evolution & development.

Phylogenomic analysis of Pristionchus nematodes with the focus on orphan genes

R. Sommer, E. Bornberg-Bauer, Metta Riebesell, 2019 .

Microindel detection in short-read sequence data

Sebastian Bauer, Christian Rödelsperger, Peter M. Krawitz, 2010, Bioinform..

Rhabditophanes diutinus a parthenogenetic clade IV nematode with dauer larvae

C. Rödelsperger, A. Rose, A. Streit, 2020, PLoS pathogens.

Computational archaeology of the Pristionchus pacificus genome reveals evidence of horizontal gene transfers from insects

R. Sommer, C. Rödelsperger, 2011, BMC Evolutionary Biology.

Computational Characterization of Genome-wide DNA-binding Pro les

C. Rödelsperger, 2011 .

De Novo, Divergence, and Mixed Origin Contribute to the Emergence of Orphan Genes in Pristionchus Nematodes

C. Rödelsperger, Neel Prabh, 2019, G3: Genes, Genomes, Genetics.

Differential variant calling in mutants from diverse genetic backgrounds: A case study in the nematode Pristionchus pacificus

C. Rödelsperger, Eduardo Moreno, 2017, bioRxiv.

Two New Species of Pristionchus ( Nematoda : Diplogastridae ) from Taiwan and the Definition of the pacificus Species-Complex Sensu Stricto Abstract

C. Rödelsperger, Kohta Yoshida, N. Kanzaki, 2018 .

Comparative Genomics of Gene Loss and Gain in Caenorhabditis and Other Nematodes.

C. Rödelsperger, 2018, Methods in molecular biology.

Two New Species of Pristionchus (Nematoda: Diplogastridae) from Taiwan and the Definition of the pacificus Species-Complex Sensu Stricto

R. Sommer, C. Rödelsperger, Kohta Yoshida, 2018, Journal of nematology.

Two New Pristionchus Species (Nematoda: Diplogastridae) from Taiwan are Part of a Species-cluster Representing the Closest Known Relatives of the Model Organism P. pacificus.

R. Sommer, C. Rödelsperger, N. Kanzaki, 2016, Zoological studies.

Ancient gene duplications have shaped developmental stage-specific expression in Pristionchus pacificus

Gabriel V. Markov, C. Dieterich, C. Rödelsperger, 2015, BMC Evolutionary Biology.

Neurofibromin (Nf1) is required for skeletal muscle development.

P. Robinson, S. Mundlos, C. Rödelsperger, 2011, Human molecular genetics.

Duplications and Positive Selection Drive the Evolution of Parasitism-Associated Gene Families in the Nematode Strongyloides papillosus

C. Rödelsperger, A. Streit, P. Baskaran, 2017, Genome biology and evolution.

Genomic Profiles of Diversification and Genotype-Phenotype Association in Island Nematode Lineages.

R. Sommer, K. Borgwardt, C. Rödelsperger, 2016, Molecular biology and evolution.

Short ultraconserved promoter regions delineate a class of preferentially expressed alternatively spliced transcripts.

Marcel H. Schulz, S. Köhler, Sebastian Bauer, 2009, Genomics.

Museum phylogenomics of extinct Oryctes beetles from the Mascarene Islands

R. Sommer, H. Burbano, C. Rödelsperger, 2020, bioRxiv.

Analysis of repeat elements in the Pristionchus pacificus genome reveals an ancient invasion by horizontally transferred transposons

C. Rödelsperger, Marina Athanasouli, 2022, BMC genomics.

Spatial Transcriptomics of Nematodes Identifies Sperm Cells as a Source of Genomic Novelty and Rapid Evolution

R. Sommer, C. Rödelsperger, H. Korswagen, 2020, Molecular biology and evolution.

Adaptation to environmental temperature in divergent clades of the nematode Pristionchus pacificus

R. Sommer, A. Hyman, C. Rödelsperger, 2022, Evolution; international journal of organic evolution.

First insights into the nature and evolution of antisense transcription in nematodes

C. Rödelsperger, H. Witte, P. Baskaran, 2016, BMC Evolutionary Biology.

The improved genome of the nematode Parapristionchus giblindavisi provides insights into lineage-specific gene family evolution

R. Sommer, C. Rödelsperger, C. Lanz, 2022, G3.

Neuroﬁbromin (Nf1) is required for skeletal muscle development

T. Braun, P. Robinson, S. Mundlos, 2011 .

Distinct global shifts in genomic binding profiles of limb malformation-associated HOXD13 mutations

P. Robinson, D. Horn, S. Mundlos, 2013, Genome research.

Structure, Function and Evolution of The Nematode Genome

R. Sommer, C. Rödelsperger, A. Streit, 2013 .

Characterization of Genetic Diversity in the Nematode Pristionchus pacificus from Population-Scale Resequencing Data

Christoph Dieterich, Ralf J. Sommer, Christian Rödelsperger, 2014, Genetics.

Opposing Forces of A/T-Biased Mutations and G/C-Biased Gene Conversions Shape the Genome of the Nematode Pristionchus pacificus

R. Sommer, C. Rödelsperger, Andreas M. Weller, 2014, Genetics.

New Gene Origin and Deep Taxon Phylogenomics: Opportunities and Challenges.

R. Sommer, C. Rödelsperger, Neel Prabh, 2019, Trends in genetics : TIG.

A Developmental Switch Generating Phenotypic Plasticity Is Part of a Conserved Multi-gene Locus.

R. Sommer, C. Rödelsperger, Neel Prabh, 2018, Cell reports.

The Nuclear Hormone Receptor NHR-40 Acts Downstream of the Sulfatase EUD-1 as Part of a Developmental Plasticity Switch in Pristionchus

Gabriel V. Markov, R. Sommer, C. Rödelsperger, 2016, Current Biology.

Identity-by-descent filtering of exome sequence data for disease–gene identification in autosomal recessive disorders

Sebastian Bauer, Peter N. Robinson, Abigail W. Bigham, 2011, Bioinform..

Chromosome fusions repatterned recombination rate and facilitated reproductive isolation during Pristionchus nematode speciation

R. Sommer, Metta Riebesell, C. Rödelsperger, 2023, Nature Ecology & Evolution.

Syntenator: Multiple gene order alignments with a gene-specific scoring function

Christoph Dieterich, Christian Rödelsperger, C. Dieterich, 2008, Algorithms for Molecular Biology.

FGFR3 is a target of the homeobox transcription factor SHOX in limb development.

C. Rödelsperger, G. Rappold, J. Hecht, 2011, Human molecular genetics.

Large-scale diversification without genetic isolation in nematode symbionts of figs

R. Giblin-Davis, R. Sommer, C. Rödelsperger, 2016, Science Advances.

Parasitological and transcriptomic comparison of Strongyloides ratti infections in natural and in suboptimal permissive hosts.

C. Rödelsperger, A. Streit, Tegegn G. Jaleta, 2017, Experimental parasitology.

Characterization of a non-sexual population of Strongyloides stercoralis with hybrid 18S rDNA haplotypes in Guangxi, Southern China

C. Rödelsperger, A. Streit, Y. F. Chan, 2019, PLoS neglected tropical diseases.

Differential chromatin amplification and chromosome complements in the germline of Strongyloididae (Nematoda)

C. Rödelsperger, A. Kulkarni, D. Harbecke, 2016, Chromosoma.

Genomic studies on Strongyloides stercoralis in northern and western Thailand

C. Rödelsperger, A. Streit, A. Saeung, 2020, Parasites & Vectors.

Full mitochondrial and nuclear genome comparison confirms that Onchocerca sp. “Siisa” is Onchocerca ochengi

C. Rödelsperger, A. Streit, A. Eisenbarth, 2018, Parasitology Research.

Transcriptomic characterisation and genomic glimps into the toxigenic dinoflagellate Azadinium spinosum, with emphasis on polykeitde synthase genes

C. Rödelsperger, A. Cembella, U. Tillmann, 2015, BMC Genomics.

The Orphan Gene dauerless Regulates Dauer Development and Intraspecific Competition in Nematodes by Copy Number Variation

R. Sommer, Metta Riebesell, C. Rödelsperger, 2015, PLoS genetics.

Chromatin remodelling and antisense-mediated up-regulation of the developmental switch gene eud-1 control predatory feeding plasticity

R. Sommer, C. Rödelsperger, Hua Xiao, 2016, Nature Communications.

Two Graph-based Approaches for Finding Cross-species Conserved Gene Orders

Christoph Dieterich, Christian Rödelsperger, C. Dieterich, 2007, German Conference on Bioinformatics.

Conserved nuclear hormone receptors controlling a novel plastic trait target fast-evolving genes expressed in a single cell

R. Sommer, C. Rödelsperger, Shuai Sun, 2020, PLoS genetics.

Conserved nuclear receptors controlling a novel trait target fast-evolving genes expressed in a single cell

R. Sommer, C. Rödelsperger, Shuai Sun, 2019, bioRxiv.

First insights into the nature and evolution of antisense transcription in nematodes

C. Rödelsperger, P. Baskaran, Vahan Serobyan, 2016, BMC Evolutionary Biology.

Are orphan genes protein-coding, prediction artifacts, or non-coding RNAs?

C. Rödelsperger, Neel Prabh, 2016, BMC Bioinformatics.

Extracellular proteostasis prevents aggregation during pathogenic attack

R. Sommer, C. Rödelsperger, M. Haslbeck, 2020, Nature.

Sex or cannibalism: Polyphenism and kin recognition control social action strategies in nematodes

R. Sommer, C. Rödelsperger, A. Traulsen, 2021, Science advances.

Small peptide–mediated self-recognition prevents cannibalism in predatory nematodes

R. Sommer, C. Rödelsperger, James W. Lightfoot, 2019, Science.

Integrative analysis of genomic, functional and protein interaction data predicts long-range enhancer-target gene interactions

Marcel H. Schulz, Sebastian Bauer, Sebastian Köhler, 2010, Nucleic acids research.

Deep taxon sampling reveals the evolutionary dynamics of novel gene families in Pristionchus nematodes

R. Sommer, C. Rödelsperger, Neel Prabh, 2018, Genome research.

Draft Genome of the Scarab Beetle Oryctes borbonicus on La Réunion Island

Gabriel V. Markov, R. Sommer, C. Rödelsperger, 2016, Genome biology and evolution.

The community-curated Pristionchus pacificus genome facilitates automated gene annotation improvement in related nematodes

C. Rödelsperger, 2021, BMC genomics.

Single-Molecule Sequencing Reveals the Chromosome-Scale Genomic Architecture of the Nematode Model Organism Pristionchus pacificus.

R. Sommer, C. Rödelsperger, C. Lanz, 2017, Cell reports.

Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus

R. Sommer, C. Rödelsperger, G. Eberhardt, 2020, BMC Genomics.

Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus

R. Sommer, C. Rödelsperger, G. Eberhardt, 2020, BMC Genomics.

Crowdsourcing and the feasibility of manual gene annotation: A pilot study in the nematode Pristionchus pacificus

C. Rödelsperger, Shuai Sun, Ziduan Han, 2019, Scientific Reports.

Phylotranscriptomics of Pristionchus Nematodes Reveals Parallel Gene Loss in Six Hermaphroditic Lineages

R. Sommer, C. Rödelsperger, Kohta Yoshida, 2018, Current Biology.

Linking Genomic and Metabolomic Natural Variation Uncovers Nematode Pheromone Biosynthesis.

Gabriel V. Markov, R. Sommer, C. Rödelsperger, 2018, Cell chemical biology.

Are orphan genes protein-coding, prediction artifacts, or non-coding RNAs?

Christian Rödelsperger, Neel Prabh, C. Rödelsperger, 2016, BMC Bioinformatics.

Nine new Pristionchus (Nematoda: Diplogastridae) species from China.

R. Sommer, C. Rödelsperger, Jürgen R. Berger, 2021, Zootaxa.

Two new Species of Pristionchus (Nematoda: Diplogastridae) include the Gonochoristic Sister Species of P. fissidentatus

R. Sommer, C. Rödelsperger, Kohta Yoshida, 2019, Journal of nematology.

Samplings of Millipedes in Japan and Scarab Beetles in Hong Kong result in five new Species of Pristionchus (Nematoda: Diplogastridae)

R. Sommer, C. Rödelsperger, Kohta Yoshida, 2018, Journal of nematology.

New Role for DCR-1/Dicer in Caenorhabditis elegans Innate Immunity against the Highly Virulent Bacterium Bacillus thuringiensis DB27

R. Sommer, C. Rödelsperger, A. Sinha, 2013, Infection and Immunity.

The importance of being regular: Caenorhabditis elegans and Pristionchus pacificus defecation mutants are hypersusceptible to bacterial pathogens.

R. Sommer, C. Rödelsperger, R. Rae, 2012, International journal for parasitology.

Influence of environmental temperature on mouth-form plasticity in Pristionchus pacificus acts through daf-11-dependent cGMP signaling

R. Sommer, Metta Riebesell, C. Rödelsperger, 2021, bioRxiv.

Gene inactivation using the CRISPR/Cas9 system in the nematode Pristionchus pacificus

R. Sommer, C. Rödelsperger, Jungeun Kim, 2014, Development Genes and Evolution.

Succession and dynamics of Pristionchus nematodes and their microbiome during decomposition of Oryctes borbonicus on La Réunion Island

R. Sommer, F. Glöckner, C. Rödelsperger, 2017, Environmental microbiology.

Life History Responses and Gene Expression Profiles of the Nematode Pristionchus pacificus Cultured on Cryptococcus Yeasts

R. Sommer, C. Rödelsperger, P. Baskaran, 2016, PloS one.

Bacterial vitamin B12 production enhances nematode predatory behavior

R. Sommer, C. Rödelsperger, Wen-Sui Lo, 2020, The ISME Journal.

Promiscuous and Depolarization‐Induced Immediate‐Early Response Genes Are Induced by Mechanical Strain of Osteoblasts

P. Robinson, Sebastian Bauer, S. Mundlos, 2009, Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research.

Tissue-specific safety mechanism results in opposite protein aggregation patterns during aging

R. Sommer, C. Rödelsperger, D. David, 2020, bioRxiv.

Two independent sulfation processes regulate mouth-form plasticity in the nematode Pristionchus pacificus

R. Sommer, C. Rödelsperger, Eduardo Moreno, 2018, Development.

Did Caenorhabditis nematodes recycle transposons to fight pathogens?

C. Rödelsperger, Zi-Wen Li, 2022, bioRxiv.

Microevolution of Duplications and Deletions and Their Impact on Gene Expression in the Nematode Pristionchus pacificus

C. Rödelsperger, P. Baskaran, 2015, PloS one.

Comparative transcriptomics of the nematode gut identifies global shifts in feeding mode and pathogen susceptibility

Veeren M. Chauhan, C. Rödelsperger, J. Aylott, 2016, BMC Research Notes.

Ancient gene duplications have shaped developmental stage-specific expression in Pristionchus pacificus

Gabriel V. Markov, C. Dieterich, C. Rödelsperger, 2015, BMC Evolutionary Biology.