Xinxia Peng

发表

Compression of next-generation sequencing reads aided by highly efficient de novo assembly

Walter L. Ruzzo, Xinxia Peng, Michael G. Katze, 2012, Nucleic acids research.

Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers

Xinxia Peng, M. Katze, Elizabeth Rosenzweig, 2009, BMC Genomics.

A combined transcriptome and proteome survey of malaria parasite liver stages

Xinxia Peng, S. Kappe, A. Tarun, 2008, Proceedings of the National Academy of Sciences.

Virus-host interactions: from systems biology to translational research.

Xinxia Peng, M. Katze, E. Chan, 2009, Current opinion in microbiology.

MicroRNA Expression and Virulence in Pandemic Influenza Virus-Infected Mice

Xinxia Peng, Yu Li, Chester Ni, 2010, Journal of Virology.

The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease

Xinxia Peng, Christophe Dessimoz, Yoshihiro Kawaoka, 2014, Nature Biotechnology.

Integrative Deep Sequencing of the Mouse Lung Transcriptome Reveals Differential Expression of Diverse Classes of Small RNAs in Response to Respiratory Virus Infection

Lisa E. Gralinski, Martin T. Ferris, S. Luo, 2011, mBio.

Unique Signatures of Long Noncoding RNA Expression in Response to Virus Infection and Altered Innate Immune Signaling

Lisa E. Gralinski, Martin T. Ferris, J. Castle, 2010, mBio.

Annotation of long non-coding RNAs expressed in Collaborative Cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts

Lisa E. Gralinski, Martin T. Ferris, G. Schroth, 2014, RNA biology.

Next-Generation Sequence Analysis of the Genome of RFHVMn, the Macaque Homolog of Kaposi's Sarcoma (KS)-Associated Herpesvirus, from a KS-Like Tumor of a Pig-Tailed Macaque

Xinxia Peng, T. Rose, A. Grundhoff, 2013, Journal of Virology.

Noncanonical placental Fc receptors: What is their role in modulating transplacental transfer of maternal IgG?

Xinxia Peng, G. Fouda, M. Ackerman, 2018, PLoS pathogens.

Cell Host & Microbe Resource Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H 1 N 1 Influenza Virus Infection : The Crucial Role of Lipid Metabolism

Richard D. Smith, Xinxia Peng, M. Katze, 2022 .

Frequent pattern finding in integrated biological networks

Xinxia Peng, M. Langston, 2005 .

Systematic profiling of full-length immunoglobulin and T-cell receptor repertoire diversity in rhesus macaque through long read transcriptome sequencing

Xinxia Peng, E. Tseng, L. Picker, 2019, bioRxiv.

Infection with MERS-CoV Causes Lethal Pneumonia in the Common Marmoset

Xinxia Peng, M. Katze, H. Feldmann, 2014, PLoS pathogens.

Fc Gamma Receptor Polymorphisms Modulated the Vaccine Effect on HIV-1 Risk in the HVTN 505 HIV Vaccine Trial

Lindsay N. Carpp, Allan C. deCamp, S. Hammer, 2019, Journal of Virology.

Next-Generation Sequencing Reveals HIV-1-Mediated Suppression of T Cell Activation and RNA Processing and Regulation of Noncoding RNA Expression in a CD4+ T Cell Line

Jeffrey M. Weiss, Stewart T. Chang, Xinxia Peng, 2011, mBio.

Effects of arginine on heat‐induced aggregation of concentrated protein solutions

Xinxia Peng, Dhawal Shah, R. Rajagopalan, 2011, Biotechnology progress.

P58IPK: A Novel “CIHD” Member of the Host Innate Defense Response against Pathogenic Virus Infection

Matthew D. Dyer, Lucy A. Perrone, Xinxia Peng, 2009, PLoS pathogens.

Assessment and improvement of Indian‐origin rhesus macaque and Mauritian‐origin cynomolgus macaque genome annotations using deep transcriptome sequencing data

W. L. Ruzzo, Daniel C. Jones, G. Schroth, 2014, Journal of medical primatology.

Elucidating the Role of Host Long Non-Coding RNA during Viral Infection: Challenges and Paths Forward

Xinxia Peng, H. Brochu, David J Lemler, 2017, Vaccines.

Macrophage-associated wound healing contributes to African green monkey SIV pathogenesis control

Jeffrey M. Weiss, Xinxia Peng, J. Komorowski, 2019, Nature Communications.

ACTIVATION OF IGF-1 SYSTEM DURING ADIPOGENESIS: EXAMINATION IN VITRO AND IN VIVO

Xinxia Peng, 2001 .

Fc Characteristics Mediate Selective Placental Transfer of IgG in HIV-Infected Women

Xinxia Peng, J. Weiner, G. Alter, 2019, Cell.

IgG is differentially and selectively transferred across the placenta in HIV-infected women

Xinxia Peng, J. Weiner, G. Alter, 2018, bioRxiv.

Next-Generation Sequencing Reveals HIV-1-Mediated Suppression of T Cell Activation and RNA Processing and Regulation of Noncoding RNA Expression in a CD 4 T Cell Line

Jeffrey M. Weiss, Stewart T. Chang, Xinxia Peng, 2011 .

A new approach to bias correction in RNA-Seq

Walter L. Ruzzo, Xinxia Peng, Michael G. Katze, 2012, Bioinform..

Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR)

Jean Thierry-Mieg, Xinxia Peng, Donna M. Muzny, 2014, Nucleic Acids Res..

Interleukin-15 response signature predicts RhCMV/SIV vaccine efficacy

Leanne S. Whitmore, Xinxia Peng, J. Komorowski, 2021, PLoS pathogens.

Coupling high-throughput mapping with proteomics analysis delineates cis-regulatory elements at high resolution

Xinxia Peng, J. Cui, Gang Li, 2021, Nucleic acids research.

SAP1 is a critical post‐transcriptional regulator of infectivity in malaria parasite sporozoite stages

Xinxia Peng, A. Aly, S. Kappe, 2011, Molecular microbiology.

Distinct Malaria Parasite Sporozoites Reveal Transcriptional Changes That Cause Differential Tissue Infection Competence in the Mosquito Vector and Mammalian Host

Xinxia Peng, S. Kappe, P. de la Vega, 2008, Molecular and Cellular Biology.

Assessment and improvement of the Plasmodium yoelii yoelii genome annotation through comparative analysis

Ling Li, Xinxia Peng, Gowthaman Ramasamy, 2008, ISMB.

Deep Sequencing of HIV-Infected Cells: Insights into Nascent Transcription and Host-Directed Therapy

Jun Wang, Xinxia Peng, M. Katze, 2014, Journal of Virology.

Host cell transcriptional profiling during malaria liver stage infection reveals a coordinated and sequential set of biological events

Xinxia Peng, S. Kappe, M. Mota, 2009, BMC Genomics.

The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics

Jean Thierry-Mieg, Sheng Li, Xinxia Peng, 2012, Nucleic Acids Res..

Porcine Vocal Fold Lamina Propria-Derived Biomaterials Modulate TGF-β1-Mediated Fibroblast Activation in Vitro.

Xinxia Peng, D. Freytes, R. Branski, 2020, ACS biomaterials science & engineering.

Lethal Dissemination of H5N1 Influenza Virus Is Associated with Dysregulation of Inflammation and Lipoxin Signaling in a Mouse Model of Infection

Xinxia Peng, David E. Swayne, Michael G. Katze, 2010, Journal of Virology.

Inferring environmental transmission using phylodynamics: a case-study using simulated evolution of an enteric pathogen

David A. Rasmussen, Xinxia Peng, C. Lanzas, 2021, Journal of the Royal Society Interface.

Evaluation of the innate immune responses to influenza and live-attenuated influenza vaccine infection in primary differentiated human nasal epithelial cells.

Xinxia Peng, M. Katze, S. Klein, 2017, Vaccine.

Genomic Profiling of Collaborative Cross Founder Mice Infected with Respiratory Viruses Reveals Novel Transcripts and Infection-Related Strain-Specific Gene and Isoform Expression

Lisa E. Gralinski, Martin T. Ferris, G. Schroth, 2014, G3: Genes, Genomes, Genetics.

Computational identification of extra coding RNAs related to HIV-1 infection

Xinxia Peng, Ian Huntress, Erin Harrell, 2019, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Deep Transcriptional Sequencing of Mucosal Challenge Compartment from Rhesus Macaques Acutely Infected with Simian Immunodeficiency Virus Implicates Loss of Cell Adhesion Preceding Immune Activation

Jeffrey M. Weiss, Xinxia Peng, M. Katze, 2014, Journal of Virology.

The Alpha/Beta Interferon Receptor Provides Protection against Influenza Virus Replication but Is Dispensable for Inflammatory Response Signaling

Xinxia Peng, M. Katze, S. Proll, 2009, Journal of Virology.

Tumor Necrosis Factor Alpha-Induced Interleukin-1 Alpha Synthesis and Cell Death Is Increased in Mouse Epithelial Cells Infected With Chlamydia muridarum.

Xinxia Peng, J. A. Ezzell, H. Brochu, 2021, The Journal of infectious diseases.

Lethal Influenza Virus Infection in Macaques Is Associated with Early Dysregulation of Inflammatory Related Genes

Xinxia Peng, Jean H. Chang, Michael G. Katze, 2009, PLoS pathogens.

FCGR2C Polymorphisms Associated with HIV-1 Vaccine Protection Are Linked to Altered Gene Expression of Fc-γ Receptors in Human B Cells

Xinxia Peng, M. Katze, P. Gilbert, 2016, PloS one.

Systematic Profiling of Full-Length Ig and TCR Repertoire Diversity in Rhesus Macaque through Long Read Transcriptome Sequencing

Xinxia Peng, E. Tseng, L. Picker, 2020, The Journal of Immunology.

Computational Analysis of Mass Spectrometry Data Using Novel Combinatorial Methods

Michael A. Langston, Ahmed Fadiel, Xinxia Peng, 2006, IEEE International Conference on Computer Systems and Applications, 2006..

Simultaneous profiling of sexually transmitted bacterial pathogens, microbiome, and concordant host response in cervical samples using whole transcriptome sequencing analysis

Xinxia Peng, T. Darville, Aiden Jones, 2019, Microbial cell.

Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism.

Young-Mo Kim, Xinxia Peng, Yoshihiro Kawaoka, 2016, Cell host & microbe.

Inhalation of lung spheroid cell secretome and exosomes promotes lung repair in pulmonary fibrosis

Xinxia Peng, K. Adler, Kristen D. Popowski, 2020, Nature Communications.

Sustained IL-15 response signature predicts RhCMV/SIV vaccine efficacy

Leanne S. Whitmore, Xinxia Peng, J. Komorowski, 2021, bioRxiv.

A Combinatorial Approach to the Analysis of Differential Gene Expression Data

Lan Lin, Michael A. Langston, Bing Zhang, 2005 .

Circulating tumor cells exit circulation while maintaining multicellularity, augmenting metastatic potential

Xinxia Peng, K. Cheng, J. Yoder, 2019, Journal of Cell Science.

Isolator: accurate and stable analysis of isoform-level expression in RNA-Seq experiments

Walter L. Ruzzo, Xinxia Peng, Daniel C. Jones, 2016, bioRxiv.

Detecting Network Motifs in Gene Co-expression Networks Through Integration of Protein Domain Information

Michael A. Langston, Jay Snoddy, Xinxia Peng, 2004 .

Inhalation of lung spheroid cell secretome and exosomes promotes lung repair in pulmonary fibrosis

Xinxia Peng, K. Adler, Kristen D. Popowski, 2020, Nature Communications.

Evaluation of the innate immune responses to influenza and live-attenuated influenza vaccine infection in primary differentiated human nasal epithelial cells.

Xinxia Peng, M. Katze, J. Treanor, 2017, Vaccine.