J. Carulli

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High throughput analysis of differential gene expression

J. Carulli, M. Artinger, P. Swain, 1998, Journal of cellular biochemistry.

TRAF1-C5 as a risk locus for rheumatoid arthritis--a genomewide study.

Anbupalam Thalamuthu, Wentian Li, David Altshuler, 2007, The New England journal of medicine.

Exome sequencing in amyotrophic lateral sclerosis identifies risk genes and pathways

Brittany N. Lasseigne, W. Chung, D. Goldstein, 2015, Science.

H. Jäckle, R. Schuh, J. Carulli, 1996, Development Genes and Evolution.

Peptidoglycan recognition proteins Pglyrp3 and Pglyrp4 are encoded from the epidermal differentiation complex and are candidate genes for the Psors4 locus on chromosome 1q21

J. Carulli, A. Bowcock, J. Dupuis, 2006, Human Genetics.

Application of functional genomic technologies in a mouse model of retinal degeneration.

Chunhua Yang, J. Carulli, J. Shearstone, 2005, Genomics.

SMN deficiency in severe models of spinal muscular atrophy causes widespread intron retention and DNA damage

Norm Allaire, Adrian R Krainer, A. Krainer, 2017, Proceedings of the National Academy of Sciences.

Rescue of gene-expression changes in an induced mouse model of spinal muscular atrophy by an antisense oligonucleotide that promotes inclusion of SMN2 exon 7.

Y. Hua, A. Krainer, J. Carulli, 2015, Genomics.

Optimization of a high-throughput whole blood expression profiling methodology and its application to assess the pharmacodynamics of interferon (IFN) beta-1a or polyethylene glycol-conjugated IFN beta-1a in healthy clinical trial subjects

J. Carulli, J. Bienkowska, S. Bushnell, 2013, BMC Research Notes.

Experimental comparison and cross-validation of Affymetrix HT plate and cartridge array gene expression platforms.

J. Carulli, J. Bienkowska, Leila E. Rieder, 2008, Genomics.

Sequencing and Analysis of JC Virus DNA From Natalizumab-Treated PML Patients

J. Carulli, K. Simon, P. Cinque, 2011, The Journal of infectious diseases.

Development of a Multi-Biomarker Disease Activity Test for Rheumatoid Arthritis

J. Carulli, G. Cavet, M. Weinblatt, 2013, PloS one.

Inflammatory arthritis can be reined in by CpG-induced DC–NK cell cross talk

J. Carulli, R. Weissleder, C. Benoist, 2007, The Journal of experimental medicine.

Progressive multifocal leukoencephalopathy (PML) development is associated with mutations in JC virus capsid protein VP1 that change its receptor specificity.

J. Carulli, S. Sunyaev, A. Lazzarin, 2011, The Journal of infectious diseases.

Linkage analyses of chromosome 18 markers do not identify a major susceptibility locus for bipolar affective disorder in the Old Order Amish.

J. Ott, S. Paul, J. Carulli, 1995, American journal of human genetics.

STAT4 and the risk of rheumatoid arthritis and systemic lupus erythematosus.

Wentian Li, Geoffrey Hom, Lars Alfredsson, 2007, The New England journal of medicine.

Newborn blood spot screening test using multiplexed real-time PCR to simultaneously screen for spinal muscular atrophy and severe combined immunodeficiency.

J. Carulli, S. Dobrowolski, W. H. Hannon, 2015, Clinical chemistry.

Genome-wide Analyses Identify KIF5A as a Novel ALS Gene in and for Therapeutic

Timothy A. Miller, Denis C. Bauer, Shankaracharya, 2018 .

ΔNp63/p73 drive metastatic colonization by controlling a regenerative epithelial stem cell program in quasi-mesenchymal cancer stem cells.

R. Weinberg, J. Carulli, Xin Li, 2022, Developmental cell.

Several Regions in the Major Histocompatibility Complex Confer Risk for Anti-CCP-Antibody Positive Rheumatoid Arthritis, Independent of the DRB1 Locus

Annette Lee, P. Gregersen, Wentian Li, 2008, Molecular medicine.

A genome-wide search for chromosomal loci linked to bipolar affective disorder in the Old Order Amish

J. Weissenbach, J. Ott, S. Paul, 1996, Nature Genetics.

A genome-wide search for chromosomal loci linked to mental health wellness in relatives at high risk for bipolar affective disorder among the Old Order Amish.

N. Schork, R. Elston, S. Paul, 1998, Proceedings of the National Academy of Sciences of the United States of America.

Discovery and characterization of SY-1365, a selective, covalent inhibitor of CDK7.

David A. Orlando, J. Hodgson, J. Carulli, 2019, Cancer research.

Compositional heterogeneity and patterns of molecular evolution in the Drosophila genome.

D. Hartl, J. Carulli, H. Ochman, 1993, Genetics.

A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica

Robert E Handsaker, Daniel G MacArthur, Karol Estrada, 2018, Nature Communications.

CRIPTO3, a presumed pseudogene, is expressed in cancer.

Suzanne Szak, J. Carulli, M. Sanicola, 2008, Biochemical and biophysical research communications.

A genome-wide screen of gene–gene interactions for rheumatoid arthritis susceptibility

J. Carulli, Chunyu Liu, Chunyu Liu, 2011, Human Genetics.

A mutation in the LDL receptor-related protein 5 gene results in the autosomal dominant high-bone-mass trait.

Mark L. Johnson, P. van Eerdewegh, J. Carulli, 2002, American journal of human genetics.

Kirrel2, a novel immunoglobulin superfamily gene expressed primarily in beta cells of the pancreatic islets.

A. Lukashin, J. Carulli, D. Kilburn, 2003, Genomics.

Variable rates of evolution among Drosophila opsin genes.

D. Hartl, J. Carulli, 1992, Genetics.

Genome-Wide Association Scan Identifies Candidate Polymorphisms Associated with Differential Response to Anti-TNF Treatment in Rheumatoid Arthritis

Wentian Li, Josée Dupuis, Robert M. Plenge, 2008, Molecular medicine.

Phylogeny and physiology of Drosophila opsins

D. Hartl, W. Stark, J. Carulli, 1994, Journal of Molecular Evolution.

Chromosome 18 markers: Linked or not linked to bipolar affective disorders in the Old Order Amish? A reply to Gershon et al.

J. Ott, S. Paul, J. Carulli, 1996 .

Targeting RARA overexpression with tamibarotene, a potent and selective RARα agonist, is a novel approach in AML

J. Carulli, M. McKeown, M. Eaton, 2022, Blood advances.

JC Polyomavirus Abundance and Distribution in Progressive Multifocal Leukoencephalopathy (PML) Brain Tissue Implicates Myelin Sheath in Intracerebral Dissemination of Infection

J. Carulli, K. Mansfield, S. Staugaitis, 2016, PloS one.

Convergent Random Forest predictor: methodology for predicting drug response from genome-scale data applied to anti-TNF response.

Ronenn Roubenoff, Peter K Gregersen, P. Gregersen, 2009, Genomics.

Whole Genome Sequencing Reveals a Chromosome 9p Deletion Causing DOCK8 Deficiency in an Adult Diagnosed with Hyper IgE Syndrome Who Developed Progressive Multifocal Leukoencephalopathy

J. Carulli, I. Jelcic, Roland Martin, 2014, Journal of Clinical Immunology.

Causal Modeling Using Network Ensemble Simulations of Genetic and Gene Expression Data Predicts Genes Involved in Rheumatoid Arthritis

Tanya Cashorali, Karl Runge, Robert E. Miller, 2011, PLoS Comput. Biol..

Murine peptidoglycan recognition proteins PglyrpIalpha and PglyrpIbeta are encoded in the epidermal differentiation complex and are expressed in epidermal and hematopoietic tissues.

J. Carulli, Y. Hsu, N. Allaire, 2004, Genomics.

Allozyme Variation in Three Eastern United States Species of Aeschynomene (Fabaceae), Including the Rare A. virginica

J. Carulli, D. E. Fairbrothers, 1988 .

Newborn Bloodspot Screening Test Using Multiplexed Real-Time PCR to Simultaneously Screen for Spinal Muscular Atrophy and Severe Combined Immunodeficiency

J. Carulli, S. Dobrowolski, W. H. Hannon, 2014 .

Modular Analysis of Peripheral Blood Gene Expression in Rheumatoid Arthritis Captures Reproducible Gene Expression Changes in Tumor Necrosis Factor Responders

Michaela Oswald, Peter K Gregersen, Annette Lee, 2015, Arthritis & rheumatology.

Genome-Wide SNP Scan Identifies Polymorphisms Associated with Differential Response to Anti-TNF Treatment Among Rheumatoid Arthritis Patients in the ABCoN Cohort

Wentian Li, Peter K. Gregersen, Jadwiga Bienkowska, 2007 .

Opsin phylogeny and evolution: a model for blue shifts in wavelength regulation.

D. Hartl, J. Carulli, B. Chang, 1995, Molecular phylogenetics and evolution.

Erythroid lineage chromatin accessibility maps facilitate identification and validation of NFIX as a fetal hemoglobin repressor

J. Carulli, J. Shearstone, Mudit Chaand, 2023, Communications biology.

SMN deficiency in severe models of spinal muscular atrophy causes widespread intron retention and DNA damage

A. Krainer, J. Carulli, Mohini Jangi, 2017, Proceedings of the National Academy of Sciences.

Inflammatory arthritis can be reined in by CpG-induced DC–NK cell cross talk

J. Carulli, R. Weissleder, C. Benoist, 2007, The Journal of experimental medicine.

Patient-Centered Therapy Development for Myotonic Dystrophy: Report of the Myotonic Dystrophy Foundation–Sponsored Workshop

J. Carulli, Sharon E. Hesterlee, R. Moxley, 2017, Therapeutic innovation & regulatory science.