D. Sudar

发表

High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays

W. Kuo, S. Dairkee, D. Pinkel, 1998, Nature Genetics.

Segmentation of confocal microscope images of cell nuclei in thick tissue sections

D. Pinkel, J. Gray, C. Ortiz de Solórzano, 1999, Journal of microscopy.

PointCloudXplore: Visual Analysis of 3D Gene Expression Data Using Physical Views and Parallel Coordinates

Jitendra Malik, Hans Hagen, Bernd Hamann, 2006, EuroVis.

Comparative Genomic Hybridization for Molecular Cytogenetic Analysis of Solid Tumors

D. Pinkel, J. Gray, D. Sudar, 2022 .

Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline

Charless C. Fowlkes, D. W. Knowles, M. Eisen, 2006, Genome Biology.

Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution II: dynamics

Charless C. Fowlkes, Jitendra Malik, D. Sudar, 2006, Genome Biology.

Mapping organism expression levels at cellular resolution in developing Drosophila

Mark D. Biggin, Damir Sudar, David W. Knowles, 2001, SPIE BiOS.

Mapping organism expression levels at cellular resolution in developing Drosophila

D. Sudar, M. Biggin, D. Knowles, 2001, Microscopy and Microanalysis.

Visualization for Validation and Improvement of Three-dimensional Segmentation Algorithms

Bernd Hamann, Gunther H. Weber, Cris L. Luengo Hendriks, 2005, EuroVis.

3d morphology and gene expression in the drosophila blastoderm at cellular resolution

Charless C. Fowlkes, M. Eisen, Jitendra Malik, 2006 .

Image Detectors for Digital Image Microscopy

I. Young, D. Sudar, L. V. Vliet, 1998 .

Digital Fluorescence Imaging Using Cooled CCD Array Cameras invisible

I. Young, D. Sudar, L. V. Vliet, 1998 .

A perspective on Microscopy Metadata: data provenance and quality control

Claire M. Brown, D. Sudar, D. Grunwald, 2019, 1910.11370.

Automated local bright feature image analysis of nuclear protein distribution identifies changes in tissue phenotype.

Damir Sudar, D. W. Knowles, David W Knowles, 2006, Proceedings of the National Academy of Sciences of the United States of America.

Comparative genomic hybridization: a rapid new method for detecting and mapping DNA amplification in tumors.

D Rutovitz, D Sudar, J W Gray, 1993, Seminars in cancer biology.

Computer image analysis of comparative genomic hybridization.

D Rutovitz, J Piper, D Sudar, 1995, Cytometry.

Comparison of strategies to detect and quantitate uniquely marked cells in intra- and inter-species hemopoietic chimeras.

D. Sudar, H. Weier, M. Gonzalgo, 1992, Cytometry.

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution.

Nancy R. Zhang, Elizabeth H. Williams, Joshua F. McMichael, 2020, Cell.

An Integrated Clinical, Omic, and Image Atlas of an Evolving Metastatic Breast Cancer

Laura M. Heiser, Erik A. Burlingame, P. Spellman, 2020 .

Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution II: dynamics

Charless C. Fowlkes, D. W. Knowles, Jitendra Malik, 2006, Genome Biology.

Automatic fluorescence metaphase finder speeds translocation scoring in FISH painted chromosomes.

J. Piper, D. Sudar, I. Poole, 1994, Cytometry.

In Situ Detection of Complex DNA Damage Using Microscopy: A Rough Road Ahead

D. Sudar, S. Costes, A. Georgakilas, 2020, Cancers.

PointCloudXplore : Visual Analysis of 3 D Gene Expression Data Using Linked Physical and Abstract Data Views

M. Eisen, D. Sudar, B. Hamann, 2006 .

Automatic Fluorescence MetaDhase Finder h e e d s Translocation Scoring in FISH 6ainted Chrom&omesl

D. Sudar, I. Poole, R. Jensen, 2004 .

Physical mapping of chromosome 17 cosmids by fluorescence in situ hybridization and digital image analysis.

D. Pinkel, J. Gray, D. Sudar, 1994, Genomics.

Automatic Hough Transform-Based 3D Segmentation of Cell Nuclei in Thick Tissue Sections

D. Pinkel, C. Ortiz de Solórzano, D. Sudar, 1997, Microscopy and Microanalysis.

Design of a Wide Field High Sensitivity Imaging System for Quantitative Analysis of CGHA Micro-Arrays.

L. V. van Vliet, D. Albertson, J. Gray, 1997, Microscopy and Microanalysis.

MITI minimum information guidelines for highly multiplexed tissue images

Garry Nolan, Joshua F. McMichael, David L. Gibbs, 2021, Nature Methods.

Novel Image Analysis to Link Sub-Nuclear Distribution of Proteins with Cell Phenotype in Mammary Cancer

D. W. Knowles, D. Sudar, D. Knowles, 2003 .

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Nancy R. Zhang, Elizabeth H. Williams, Joshua F. McMichael, 2020, Cell.

MITI minimum information guidelines for highly multiplexed tissue images

Joshua F. McMichael, David L. Gibbs, Daniel P. Cotter, 2021, Nature Methods.

Semiautomated DNA probe mapping using digital imaging microscopy: I. System development.

D Sudar, J W Gray, P W Verbeek, 1995, Cytometry.

Phenotype clustering of breast epithelial cells in confocal images based on nuclear protein distribution analysis

Hanchuan Peng, Fuhui Long, Damir Sudar, 2006, BMC Cell Biology.

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.

Ravi Iyengar, Vasileios Stathias, Amar Koleti, 2017, Cell systems.

Comparative Genomic Hybridization

D Sudar, J W Gray, D Pinkel, 1995, Current protocols in human genetics.

A large field CCD system for quantitative imaging of microarrays

D. Pinkel, D. Albertson, R. Segraves, 2006, Nucleic acids research.

An Omic and Multidimensional Spatial Atlas from Serial Biopsies of an Evolving Metastatic Breast Cancer

Laura M. Heiser, Erik A. Burlingame, P. Spellman, 2020, bioRxiv.

Using Microarrays to Interrogate Microenvironmental Impact on Cellular Phenotypes in Cancer.

Mark A. Dane, Laura M. Heiser, Sean M. Gross, 2019, Journal of visualized experiments : JoVE.

Microenvironment-Mediated Mechanisms of Resistance to HER2 Inhibitors Differ between HER2+ Breast Cancer Subtypes

Joe W. Gray, Damir Sudar, Mark A. Dane, 2018, Cell systems.

Semiautomated DNA probe mapping using digital imaging microscopy: II. System performance.

L Mascio, D Sudar, D Pinkel, 1995, Cytometry.

QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy

Michael S. Nelson, Claudia B. Jaffe, Tobias M. Rasse, 2021, Journal of microscopy.

Molecular cytometry of cancer.

F. Waldman, D. Sudar, G. Sauter, 1996, Human pathology.

Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model

Carlas S. Smith, D. Sudar, D. Grunwald, 2021, Nature Methods.

Intercellular fluorescence background on microscope slides: some problems and solutions for automatic analysis

Jim Piper, Donald Peters, Damir Sudar, 1994, Electronic Imaging.

Comparative Genomic Hybridization to Dna Microarrays

D. Pinkel, R. Segraves, D. Sudar, 1997, Microscopy and Microanalysis.

Mapping Organism Expression Levels at Cellular Resolution in Developing Drosophila

D. Sudar, M. Biggin, D. Knowles, 2001, Microscopy and Microanalysis.

Data File Standard for Flow Cytometry, version FCS 3.1

Mario Roederer, Josef Spidlen, Michael Goldberg, 2009, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

Interactive algorithms for rapid enumeration of hybridization signals in individual whole-cell nuclei inside intact-tissue specimens

Joe W. Gray, Stephen J. Lockett, Damir Sudar, 1995, Electronic Imaging.

Addressing persistent challenges in digital image analysis of cancerous tissues

Jeremy L. Muhlich, D. Sudar, Sandhya Prabhakaran, 2023, bioRxiv.

Hardware and software requirements for quantitative analysis of comparative genomic hybridization.

J. M. García-Sagredo, J. Piper, D. Sudar, 1995, Cytometry.

Comparative Genomic Hybridization for Molecular Cytogenetic Analysis of Solid Tumors

D. Pinkel, D. Sudar, O. Kallioniemi, 1992 .

Comparative genomic hybridization.

S. Devries, D. Pinkel, D. Sudar, 2001, Current protocols in human genetics.

Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors.

D. Sudar, O. Kallioniemi, D. Rutovitz, 1992, Science.

Phenotype clustering of breast epithelial cells in confocal images based on nuclear protein distribution analysis

Fuhui Long, D. Sudar, Hanchuan Peng, 2006, BMC Cell Biology.

Efficient, interactive, and three-dimensional segmentation of cell nuclei in thick tissue sections.

D Sudar, J W Gray, S J Lockett, 1998, Cytometry.

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution.

Nancy R. Zhang, Elizabeth H. Williams, Joshua F. McMichael, 2020, Cell.

Data File Standard for Flow Cytometry, version FCS 3.1

James C S Wood, D. Sudar, R. Murphy, 2009, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer

Laura M. Heiser, Erik A. Burlingame, P. Spellman, 2022, Cell reports. Medicine.