J. Teague

发表

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

Antony V. Cox, R. Durbin, M. Hurles, 2008, Nature Genetics.

The landscape of cancer genes and mutational processes in breast cancer

A. Børresen-Dale, M. Stratton, M. J. van de Vijver, 2012, Nature.

Genomic Classification and Prognosis in Acute Myeloid Leukemia.

Nicola D. Roberts, P. Campbell, S. O'meara, 2016, The New England journal of medicine.

Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma

P. A. Futreal, Karl J. Dykema, M. Stratton, 2010, Nature.

Signatures of mutational processes in human cancer

David T. W. Jones, David C. Jones, M. Meyerson, 2013, Nature.

Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes

Gurpreet W. Tang, Karl J. Dykema, M. Stratton, 2009, Nature.

COSMIC (Catalogue of Somatic Mutations in Cancer)

C. Cole, O. Griffith, M. Stratton, 2014 .

The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website

M. Stratton, P. Futreal, R. Wooster, 2004, British Journal of Cancer.

Characterizing Mutational Signatures in Human Cancer Cell Lines Reveals Episodic APOBEC Mutagenesis

M. Stratton, B. Ng, P. Campbell, 2019, Cell.

Mutational Processes Molding the Genomes of 21 Breast Cancers

A. Børresen-Dale, M. Stratton, P. Futreal, 2012, Cell.

Landscape of somatic mutations in 560 breast cancer whole genome sequences

David C. Jones, E. Birney, M. Ringnér, 2016, Nature.

Mutations in the DLG3 gene cause nonsyndromic X-linked mental retardation.

J. Gécz, M. Stratton, P. Futreal, 2004, American journal of human genetics.

Massive Genomic Rearrangement Acquired in a Single Catastrophic Event during Cancer Development

N. Carter, Fengtang Yang, M. Stratton, 2011, Cell.

Patterns of somatic mutation in human cancer genomes

E. Birney, A. Nicholson, M. Stratton, 2007, Nature.

The patterns and dynamics of genomic instability in metastatic pancreatic cancer

Andrew Menzies, Adam P. Butler, Jon W. Teague, 2010, Nature.

Mutations of the BRAF gene in human cancer

A. Nicholson, M. Stratton, P. Futreal, 2002, Nature.

A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation

Andrew Menzies, Sarah Edkins, Sara Widaa, 2009, Nature Genetics.

Planning the Human Variome Project: The Spain report

Toshio Kojima, John M. Hancock, Sue Povey, 2009, Human mutation.

COMPLEX LANDSCAPES OF SOMATIC REARRANGEMENT IN HUMAN BREAST CANCER GENOMES

A. Børresen-Dale, M. Stratton, H. Swerdlow, 2009, Nature.

International network of cancer genome projects

Gary D Bader, Benjamin J. Raphael, Joshua M. Stuart, 2010, Nature.

The Life History of 21 Breast Cancers

A. Børresen-Dale, M. Stratton, P. Futreal, 2012, Cell.

A comprehensive catalogue of somatic mutations from a human cancer genome

Tom Royce, D. Bentley, L. Chin, 2010, Nature.

Pan-cancer analysis of whole genomes

Steven J. M. Jones, Nuno A. Fonseca, Icgc, 2020, Nature.

Somatic mutation databases as tools for molecular epidemiology and molecular pathology of cancer: Proposed guidelines for improving data collection, distribution, and integration

J. Teague, A. Langerød, S. Forbes, 2009, Human mutation.

Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets

C. Sander, L. Matthews, S. Tavaré, 2018, Nature Genetics.

Somatic SF3B1 mutation in myelodysplasia with ring sideroblasts.

M. Stratton, P. Campbell, P. Stephens, 2011, The New England journal of medicine.

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing

Michael C. Heinold, David T. W. Jones, Timothy A Beck, 2015, Nature Communications.

A small cell lung cancer genome reports complex tobacco exposure signatures

E. Birney, K. McKernan, M. Stratton, 2009, Nature.

RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia

M. Stratton, P. Campbell, S. O'meara, 2014, Nature Genetics.

Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor

Erik N. Bergstrom, Samuel W. Brady, M. Stratton, 2020, bioRxiv.

COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer

Gurpreet W. Tang, C. Cole, M. Stratton, 2009, Nucleic acids research.

A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer

Andrew D. Yates, Yvonne R Stephens, A. Nicholson, 2005, Nature Genetics.

Athletics: Momentous sprint at the 2156 Olympics?

Andrew D. Yates, Yvonne R Stephens, A. Nicholson, 2004, Nature.

Somatic mutations of the protein kinase gene family in human lung cancer.

Andrew D. Yates, Yvonne R Stephens, A. Nicholson, 2005, Cancer research.

COSMIC 2005

M. Stratton, P. Futreal, R. Wooster, 2006, British Journal of Cancer.

Mutations in FRMD7, a newly identified member of the FERM family, cause X-linked idiopathic congenital nystagmus

M. Stratton, P. Futreal, R. Wooster, 2006, Nature Genetics.

Heterogeneity of genomic evolution and mutational profiles in multiple myeloma

G. Parmigiani, P. Futreal, P. Campbell, 2014, Nature Communications.

Clinical and biological implications of driver mutations in myelodysplastic syndromes.

M. Stratton, P. Campbell, S. O'meara, 2013, Blood.

Analysis of the Genetic Phylogeny of Multifocal Prostate Cancer Identifies Multiple Independent Clonal Expansions in Neoplastic and Morphologically Normal Prostate Tissue

Andrew Menzies, Keiran Raine, Rosalind Eeles, 2015, Nature Genetics.

The Life History of 21 Breast Cancers

Kenric Leung, Andrew Menzies, Adam P. Butler, 2015, Cell.

Mutational signatures of ionizing radiation in second malignancies

Christophe Badie, Rebecca Shepherd, David Jones, 2016, Nature Communications.

Steering Committee

Gary D Bader, Keith A. Boroevich, Miranda D. Stobbe, 2020, 2020 IEEE 24th International Enterprise Distributed Object Computing Conference (EDOC).

Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer

Bin Tean Teh, Andrew Menzies, Keiran Raine, 2014, eLife.

Signatures of mutational processes in human cancer this access benefits you. Your matters

David C. Jones, M. Meyerson, R. Eils, 2013 .

Mutations in ZDHHC9, which encodes a palmitoyltransferase of NRAS and HRAS, cause X-linked mental retardation associated with a Marfanoid habitus.

Andrew Menzies, Keiran Raine, Sarah Edkins, 2007, American journal of human genetics.

Mutations in CUL4B, which encodes a ubiquitin E3 ligase subunit, cause an X-linked mental retardation syndrome associated with aggressive outbursts, seizures, relative macrocephaly, central obesity, hypogonadism, pes cavus, and tremor.

Andrew Menzies, Keiran Raine, Sarah Edkins, 2007, American journal of human genetics.

A hypermutation phenotype and somatic MSH6 mutations in recurrent human malignant gliomas after alkylator chemotherapy.

Tracy T Batchelor, Richard Lugg, Andrew Menzies, 2006, Cancer research.

Patterns of somatic mutation in human cancer genomes

E. Birney, A. Nicholson, M. Stratton, 2007, Nature.

NIHMS662581-supplement-Supplementary data

Pardeep Kumar, Elizabeth Anderson, Jon W. Teague, 2016 .

Corrigendum: Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue

L. Matthews, M. Stratton, D. Berney, 2015, Nature Genetics.

Somatic mutations of the histone H3K27 demethylase, UTX, in human cancer

Bin Tean Teh, Chai Yin Kok, Andrew Menzies, 2009, Nature Genetics.

Mutations in the RSK2(RPS6KA3) gene cause Coffin–Lowry syndrome and nonsyndromic X‐linked mental retardation

M. Stratton, R. Wooster, S. Edkins, 2006, Clinical genetics.

The architecture of clonal expansions in morphologically normal tissue from cancerous and non-cancerous prostates

Edward R. W. Rowe, David C. Jones, L. Matthews, 2022, Molecular Cancer.

X-linked protocadherin 19 mutations cause female-limited epilepsy and cognitive impairment

Andrew Menzies, Sarah Edkins, Sara Widaa, 2008, Nature Genetics.

DNA sequence analysis of known cancer genes in the NCI-60 cell lines.

J. Weinstein, M. Stratton, R. Wooster, 2006 .

Oligosaccharyltransferase subunits mutations in non-syndromic mental retardation

Stratton, J. Gécz, P. Futreal, 2007 .

Analysis of the genomic landscape of multiple myeloma highlights novel prognostic markers and disease subgroups.

M. Moarii, P. Campbell, S. O'meara, 2017, Leukemia.

The original Lujan syndrome family has a novel missense mutation (p.N1007S) in the MED12 gene

M. Stratton, P. Futreal, S. Edkins, 2007, Journal of Medical Genetics.

COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer

Mingming Jia, Nidhi Bindal, Rebecca Shepherd, 2010, Nucleic Acids Res..

Recurrent mutation of IGF signalling genes and distinct patterns of genomic rearrangement in osteosarcoma

Daniel Baumhoer, Inigo Martincorena, Roberto Tirabosco, 2017, Nature Communications.

COSMIC: the catalogue of somatic mutations in cancer

C. Cole, M. Stratton, P. Campbell, 2011, Genome Biology.

Classification and Personalized Prognosis in Myeloproliferative Neoplasms

P. Campbell, S. O'meara, J. Teague, 2018, The New England journal of medicine.

BioMart Central Portal: an open database network for the biological community

Damian Smedley, Syed Haider, Jianxin Wang, 2011, Database J. Biol. Databases Curation.

Processed pseudogenes acquired somatically during cancer development

Andrew Menzies, Adam P. Butler, Jon W. Teague, 2014, Nature Communications.

A survey of homozygous deletions in human cancer genomes.

E. Birney, M. Stratton, P. Futreal, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Distinct H3F3A and H3F3B driver mutations define chondroblastoma and giant cell tumor of bone

M. Stratton, P. Futreal, P. Campbell, 2013, Nature Genetics.

Frequent mutation of the major cartilage collagen gene COL2A1 in chondrosarcoma

David Beare, Andrew Menzies, Keiran Raine, 2013, Nature Genetics.

COSMIC: exploring the world's knowledge of somatic mutations in human cancer

Mingming Jia, Nidhi Bindal, Simon A. Forbes, 2014, Nucleic Acids Res..

Sequence analysis of the protein kinase gene family in human testicular germ‐cell tumors of adolescents and adults

Richard Lugg, Andrew Menzies, Keiran Raine, 2006, Genes, chromosomes & cancer.

AutoCSA, an algorithm for high throughput DNA sequence variant detection in cancer genomes

Andrew M. Jenkinson, C. Greenman, Rebecca Shepherd, 2007, Bioinform..

Mutations in UPF3B, a member of the nonsense-mediated mRNA decay complex, cause syndromic and nonsyndromic mental retardation

J. Gécz, M. Stratton, P. Futreal, 2007, Nature Genetics.

SLC9A6 mutations cause X-linked mental retardation, microcephaly, epilepsy, and ataxia, a phenotype mimicking Angelman syndrome.

J. Gécz, M. Stratton, P. Futreal, 2008, American journal of human genetics.

Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes

Andrew Menzies, Adam P. Butler, Jon W. Teague, 2014, Science.

The genetic heterogeneity and mutational burden of engineered melanomas in zebrafish models

Yves Moreau, Jeroen de Ridder, Keiran Raine, 2013, Genome Biology.

Single-cell paired-end genome sequencing reveals structural variation per cell cycle

M. Stratton, P. Futreal, P. Campbell, 2013, Nucleic acids research.

Patterns of somatic structural variation in human cancer genomes

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2020, Nature.

Timing the Landmark Events in the Evolution of Clear Cell Renal Cell Cancer: TRACERx Renal

P. A. Futreal, Z. Szallasi, I. Csabai, 2018, Cell.

Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes

M. Stratton, P. Futreal, P. Campbell, 2012, The Journal of pathology.

Recurrent PTPRB and PLCG1 mutations in angiosarcoma

M. Stratton, A. Protopopov, P. Futreal, 2014, Nature Genetics.

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

Michael C. Heinold, David T. W. Jones, Timothy A Beck, 2014, bioRxiv.

Tubio retrotransposition in cancer genomes Extensive transduction of nonrepetitive DNA mediated by L 1

M. Stratton, P. Futreal, P. Campbell, 2014 .

Mutation analysis of 24 known cancer genes in the NCI-60 cell line set

Richard Lugg, Andrew Menzies, Michael R. Stratton, 2006, Molecular Cancer Therapeutics.

The Catalogue of Somatic Mutations in Cancer (COSMIC)

S A Forbes, G Bhamra, S Bamford, 2008, Current protocols in human genetics.

Polygenic in vivo validation of cancer mutations using transposons

Lia S. Campos, L. Chin, P. Futreal, 2014, Genome Biology.

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2020, Nature Communications.

Convergent somatic mutations in metabolism genes in chronic liver disease

Stanley W. K. Ng, M. Stratton, P. Campbell, 2021, Nature.

A Small Cell Lung Cancer Genome Reports Complex Tobacco Exposure Signatures Europe Pmc Funders Group

Minna, E. Birney, K. McKernan, 2022 .

Data mining using the Catalogue of Somatic Mutations in Cancer BioMart

Mingming Jia, Nidhi Bindal, Rebecca Shepherd, 2011, Database J. Biol. Databases Curation.

COSMIC, curating the cancer variome

Simon A. Forbes, Jon W. Teague, Michael R. Stratton, 2008, AIMM.

Author Correction: Landscape of somatic mutations in 560 breast cancer whole-genome sequences

E. Birney, M. Ringnér, A. Børresen-Dale, 2019, Nature.

ascatNgs: Identifying Somatically Acquired Copy‐Number Alterations from Whole‐Genome Sequencing Data

Andrew Menzies, David Jones, P. Campbell, 2016, Current protocols in bioinformatics.

COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer

Mingming Jia, Nidhi Bindal, Simon A. Forbes, 2009, Nucleic Acids Res..

gene MED12 missense mutation (p.N1007S) in the The original Lujan syndrome family has a novel

M. Stratton, S. Edkins, J. Teague, 2008 .

Somatic CALR mutations in myeloproliferative neoplasms with nonmutated JAK2.

J. D. Fitzpatrick, J W Teague, P. Campbell, 2013, The New England journal of medicine.

Whole exome sequencing of adenoid cystic carcinoma.

M. Stratton, P. Futreal, P. Campbell, 2013, The Journal of clinical investigation.

The BioMart community portal: an innovative alternative to large, centralized data repositories

Pietro Liò, Olivier Sallou, Philippe Bardou, 2015, Nucleic Acids Res..

High throughput DNA sequence variant detection by conformation sensitive capillary electrophoresis and automated peak comparison.

M. Stratton, P. Futreal, R. Wooster, 2006, Genomics.

Mutations in the BRWD3 gene cause X-linked mental retardation associated with macrocephaly.

K. Friend, M. Shaw, J. Gécz, 2007, American journal of human genetics.

The driver landscape of sporadic chordoma

Matthew D. Young, M. Stratton, T. Nielsen, 2017, Nature Communications.

Oligosaccharyltransferase-subunit mutations in nonsyndromic mental retardation.

J. Gécz, M. Stratton, P. Futreal, 2008, American journal of human genetics.

cgpCaVEManWrapper: Simple Execution of CaVEMan in Order to Detect Somatic Single Nucleotide Variants in NGS Data

David Jones, Keiran M Raine, Helen Davies, 2016, Current protocols in bioinformatics.

cgpPindel: Identifying Somatically Acquired Insertion and Deletion Events from Paired End Sequencing

Keiran M Raine, Helen Davies, Adam P Butler, 2015, Current protocols in bioinformatics.

Analysis of the genomic landscape of multiple myeloma highlights novel prognostic markers and disease subgroups

M. Moarii, P. Campbell, S. O'meara, 2017, Leukemia.

Corrigendum: Signatures of mutational processes in human cancer

Roland Eils, Natalie Jäger, Adam P. Butler, 2013, Nature.

Comprehensive molecular characterization of mitochondrial genomes in human cancers

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2017, bioRxiv.

Mutational signatures in esophageal squamous cell carcinoma from eight countries with varying incidence

David C. Jones, Lia S. Campos, R. Malekzadeh, 2021, Nature Genetics.

Author Correction: Pan-cancer analysis of whole genomes

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2023, Nature.

Mutations in the gene encoding the Sigma 2 subunit of the adaptor protein 1 complex, AP1S2, cause X-linked mental retardation.

J. Gécz, M. Stratton, P. Futreal, 2006, American journal of human genetics.

Sex differences in oncogenic mutational processes

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2019, Nature Communications.

The driver landscape of sporadic chordoma

Matthew D. Young, M. Stratton, T. Nielsen, 2017, Nature Communications.

VAGrENT: Variation Annotation Generator

P. Campbell, J. Teague, A. Menzies, 2015, Current protocols in bioinformatics.

Supplementary file 1.

Jack A. Taylor, M. Stratton, D. Hayes, 2011 .

Supplementary file 3.

Jack A. Taylor, M. Stratton, D. Hayes, 2014 .

Mining cancer genomes in COSMIC

C. Cole, M. Stratton, P. Campbell, 2012, BMC Proceedings.

The Catalogue of Somatic Mutations in Cancer

Gurpreet W. Tang, C. Cole, P. Futreal, 2009 .

Supplementary file 2.

Jack A. Taylor, D. Hayes, P. Futreal, 2014 .

Supplementary file 1.

Jack A. Taylor, D. Hayes, P. Futreal, 2014 .

A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

Nuno A. Fonseca, Benjamin J. Raphael, Allison P. Heath, 2020, Nature Communications.

COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer

Gurpreet W. Tang, C. Cole, P. Futreal, 2010, Nucleic Acids Res..

Corrigendum: Distinct H3F3A and H3F3B driver mutations define chondroblastoma and giant cell tumor of bone

M. Stratton, P. Futreal, P. Campbell, 2014, Nature Genetics.

Disease heterogeneity and personalized prognosis in myeloproliferative neoplasms

P. Campbell, S. O'meara, J. Teague, 2018 .

Keratin 19: a key role player in the invasion of human hepatocellular carcinomas

Jack A. Taylor, D. Hayes, P. Futreal, 2013, Gut.

Corrigendum: Mutations in FRMD7, a newly identified member of the FERM family, cause X-linked idiopathic congenital nystagmus

M. Stratton, P. Futreal, R. Wooster, 2011, Nature Genetics.

Author Correction: Landscape of somatic mutations in 560 breast cancer whole-genome sequences

E. Birney, M. Ringnér, A. Børresen-Dale, 2019, Nature.

Supplementary file 1.

Jack A. Taylor, D. Hayes, P. Futreal, 2011 .

Mutations of the BRAF gene in human cancer

A. Nicholson, P. Futreal, R. Wooster, 2002, Nature.

The Genetic Heterogeneity and Mutational Burden of Engineered Melanomas in Zebrafish Models Genome Biology Genome Biology the Genetic Heterogeneity and Mutational Burden of Engineered Melanomas in Zebrafish Models

M. Dovey, Erin M. Langdon, S. O'meara, 2022 .

The landscape of cancer genes and mutational processes in breast cancer

A. Børresen-Dale, M. Stratton, M. J. van de Vijver, 2012, Nature.

Heterogeneity of genomic evolution and mutational profiles in multiple myeloma

G. Parmigiani, P. Futreal, J. Teague, 2014, Nature Communications.

Supplementary File 4

Jack A. Taylor, D. Hayes, P. Futreal, 2014 .

Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes

A. Børresen-Dale, M. Stratton, M. J. van de Vijver, 2014, Science.

COSMIC: the catalogue of somatic mutations in cancer

J. Teague, Prasad Gunasekaran, D. Beare, 2011, Genome Biology.

Author Correction: Landscape of somatic mutations in 560 breast cancer whole-genome sequences

E. Birney, M. Ringnér, A. Børresen-Dale, 2019, Nature.

Mutational signatures in esophageal squamous cell carcinoma from eight countries with varying incidence

N. Hu, J. Teague, L. Alexandrov, 2021, Nature Genetics.

Supplementary File 4

Jack A. Taylor, D. Hayes, P. Futreal, 2014 .