D. Turner

发表

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

Antony V. Cox, R. Durbin, M. Hurles, 2008, Nature Genetics.

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

J. Ule, M. Kayikci, B. Zupan, 2010, Nature Structural &Molecular Biology.

Real-Time Culture-Independent Microbial Profiling Onboard the International Space Station Using Nanopore Sequencing

Kristen K. John, Serena M. Auñón-Chancellor, D. Turner, 2021, Genes.

A large genome center's improvements to the Illumina sequencing system

Richard Durbin, Aylwyn Scally, Michael A Quail, 2008, Nature Methods.

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

R. Durbin, E. Birney, T. Hubbard, 2008, Nature Biotechnology.

Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of GC-biased genomes

Z. Ning, D. Turner, M. Quail, 2009, Nature Methods.

A Barcode Screen for Epigenetic Regulators Reveals a Role for the NuB4/HAT-B Histone Acetyltransferase Complex in Histone Turnover

T. Lenstra, F. Holstege, D. Turner, 2011, PLoS genetics.

Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities

E. Delong, D. Turner, Matthew Pendleton, 2020, Genome research.

Assembly-free single-molecule nanopore sequencing recovers complete virus genomes from natural microbial communities

E. Delong, D. Turner, E. Harrington, 2019, bioRxiv.

A simple method for directional transcriptome sequencing using Illumina technology

Thomas M. Keane, D. Turner, M. Quail, 2009, Nucleic acids research.

Pan-cancer analysis of whole genomes

Steven J. M. Jones, Nuno A. Fonseca, Icgc, 2020, Nature.

Target-enrichment strategies for next-generation sequencing

Emily H Turner, J. Shendure, D. Turner, 2010, Nature Methods.

Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state.

Robert S. Illingworth, A. Bird, D. Turner, 2010, Molecular cell.

Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes

D. Kwiatkowski, H. Swerdlow, D. Turner, 2012, BMC Genomics.

Mutation spectrum revealed by breakpoint sequencing of human germline CNVs

Benjamin P. Blackburne, D. Conrad, Charles Lee, 2010, Nature Genetics.

Highly parallel direct RNA sequencing on an array of nanopores

Daniel R. Garalde, D. Turner, B. Sipos, 2016, Nature Methods.

Toward clinical proteomics on a next-generation sequencing platform.

Clive Brown, D. Turner, J. Lammertyn, 2011, Analytical chemistry.

Insights into hominid evolution from the gorilla genome sequence

Albert J. Vilella, Gregory E. Jordan, Petra C. Schwalie, 2012, Nature.

CpG islands influence chromatin structure via the CpG-binding protein Cfp1

Robert S. Illingworth, A. Bird, D. Turner, 2010, Nature.

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

John C. Tan, Anna E. Jeffreys, J. Rayner, 2012, Nature.

Orphan CpG Islands Identify Numerous Conserved Promoters in the Mammalian Genome

Robert S. Illingworth, A. Bird, D. Turner, 2010, PLoS genetics.

The GENCODE exome: sequencing the complete human exome

J. Harrow, F. Kokocinski, T. Hubbard, 2011, European Journal of Human Genetics.

Real-time, portable genome sequencing for Ebola surveillance

David A. Matthews, Jared T. Simpson, C. V. Williams, 2016, Nature.

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants.

Leopold Parts, Julian Parkhill, Gemma C. Langridge, 2009, Genome research.

High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome.

Alejandro Sanchez-Flores, Christiane Hertz-Fowler, David Horn, 2011, Genome research.

Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection

Richard M Leggett, Justin O'Grady, Daniel J Turner, 2019, Nature Biotechnology.

Nanopore DNA Sequencing and Genome Assembly on the International Space Station

Douglas J. Botkin, Alexa B. R. McIntyre, Kristen K. John, 2016, bioRxiv.

Paternally inherited cis-regulatory structural variants are associated with autism

Lilia M. Iakoucheva, Amalio Telenti, Eric Courchesne, 2018, Science.

FRT-seq: Amplification-free, strand-specific, transcriptome sequencing

Lira Mamanova, John E. Collins, Keith D. James, 2010, Nature Methods.

Nanopore sequencing of DNA concatemers reveals higher-order features of chromatin structure

Julie M. Behr, D. Turner, M. Imieliński, 2019, bioRxiv.

Histone methyltransferase MLL3 contributes to genome-scale circadian transcription

Rachel S. Edgar, F. Tamanini, D. Turner, 2013, Proceedings of the National Academy of Sciences.

Oncogene Concatenated Enriched Amplicon Nanopore Sequencing for rapid, accurate, and affordable somatic mutation detection

D. Turner, M. Borad, D. Zhang, 2020, Genome Biology.

Linear Assembly of a Human Y Centromere using Nanopore Long Reads

Karen H. Miga, Hugh E. Olsen, D. Haussler, 2017, bioRxiv.

Paternally inherited noncoding structural variants contribute to autism

J. Sebat, L. Iakoucheva, C. Corsello, 2017, bioRxiv.

High altitude adaptation in Daghestani populations from the Caucasus

D. MacArthur, C. Tyler-Smith, K. Kidd, 2011, Human Genetics.

Germline Transgenesis and Insertional Mutagenesis in Schistosoma mansoni Mediated by Murine Leukemia Virus

D. Turner, M. Berriman, Isheng. J. Tsai, 2012, PLoS pathogens.

Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing

Julie M. Behr, D. Turner, M. Imieliński, 2022, Nature Biotechnology.

Convergent evolution of psilocybin biosynthesis by psychedelic mushrooms

D. Turner, T. Ellis, A. Awan, 2018, bioRxiv.

Genomic and Proteomic Dissection of the Ubiquitous Plant Pathogen, Armillaria mellea: Toward a New Infection Model System

Thomas M. Keane, D. Turner, T. Keane, 2013, Journal of proteome research.

LamPORE: rapid, accurate and highly scalable molecular screening for SARS-CoV-2 infection, based on nanopore sequencing

D. Turner, E. Harrington, S. Juul, 2020, medRxiv.

Target-enrichment strategies for next-generation sequencing

Emily H Turner, J. Shendure, D. Turner, 2010, Nature Methods.

Commensalism in the Mimiviridae giant virus family

D. Turner, J. Claverie, C. Abergel, 2019, bioRxiv.

In Vivo Validation of Alternative FDXR Transcripts in Human Blood in Response to Ionizing Radiation

D. Turner, B. Sipos, A. Tichý, 2020, International journal of molecular sciences.

Linear assembly of a human centromere on the Y chromosome

David Haussler, Benedict Paten, Mark Akeson, 2018, Nature Biotechnology.

Exploration of signals of positive selection derived from genotype-based human genome scans using re-sequencing data

Anton J. Enright, D. Conrad, Min Hu, 2011, Human Genetics.

High-throughput decoding of anti-trypanosomal drug efficacy and resistance

Mark C. Field, D. Turner, M. Berriman, 2011, Nature.

Improved Protocols for Illumina Sequencing.

Iraad F Bronner, Michael A Quail, Daniel J Turner, 2013, Current protocols in human genetics.

Improved Protocols for Illumina Sequencing

Michael A. Quail, Daniel J. Turner, Iraad F. Bronner, 2013 .

Comprehensive Assignment of Roles for Salmonella Typhimurium Genes in Intestinal Colonization of Food-Producing Animals

Julian Parkhill, Gemma C. Langridge, Roy R. Chaudhuri, 2013, PLoS genetics.

A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium

Alex Bateman, Paul P. Gardner, Lars Barquist, 2013, Nucleic acids research.

Assaying chromosomal inversions by single-molecule haplotyping

C. Tyler-Smith, M. Hurles, J. Shendure, 2006, Nature Methods.

Genetic basis of Y-linked hearing impairment.

Tomas W. Fitzgerald, Asan, C. Tyler-Smith, 2013, American journal of human genetics.

Next‐generation DNA Sequencing Technologies

D. Turner, 2011 .

Next-generation sequencing of vertebrate experimental organisms

Thomas M. Keane, D. Turner, D. Adams, 2009, Mammalian Genome.

Germline rates of de novo meiotic deletions and duplications causing several genomic disorders

N. Carter, M. Hurles, H. Fiegler, 2008, Nature Genetics.

CEP152 is a genome maintenance protein disrupted in Seckel syndrome

Martin S. Taylor, J. Aerts, M. Hurles, 2011, Nature Genetics.

Interchromosomal template-switching as a novel molecular mechanism for imprinting perturbations associated with Temple syndrome

P. Stankiewicz, C. Shaw, J. Lupski, 2019, Genome Medicine.

TSPY1 copy number variation influences spermatogenesis and shows differences among Y lineages.

C. Tyler-Smith, D. Turner, Yali Xue, 2009, The Journal of clinical endocrinology and metabolism.

Long-range, high-throughput haplotype determination via haplotype-fusion PCR and ligation haplotyping

C. Tyler-Smith, M. Hurles, D. Turner, 2008, Nucleic acids research.

Improved Protocols for the Illumina Genome Analyzer Sequencing System

Michael A Quail, Daniel J Turner, Harold Swerdlow, 2009, Current protocols in human genetics.

Whole Genome Sequencing Highlights Genetic Changes Associated with Laboratory Domestication of C. elegans

Subhajyoti De, M. Madan Babu, Mario de Bono, 2010, PloS one.

Interchromosomal template-switching as a novel molecular mechanism for imprinting perturbations associated with Temple syndrome

P. Stankiewicz, C. Shaw, J. Lupski, 2019, Genome Medicine.

What’s in my pot? Real-time species identification on the MinION™

Eugene Kulesha, Roger Pettett, D. Turner, 2015, bioRxiv.

Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection

Gemma L. Kay, J. Wain, J. O’Grady, 2019, Nature Biotechnology.

Generation of a Transcriptional Radiation Exposure Signature in Human Blood Using Long-Read Nanopore Sequencing.

D. Turner, B. Sipos, M. Love, 2019, Radiation Research.

Mobilization of giant piggyBac transposons in the mouse genome

Kosuke Yusa, Allan Bradley, Zemin Ning, 2011, Nucleic acids research.

Exploration of the propagation of transpovirons within Mimiviridae reveals a unique example of commensalism in the viral world

D. Turner, J. Claverie, C. Abergel, 2019, The ISME Journal.

A whole-genome screen identifies Salmonella enterica serovar Typhi genes involved in fluoroquinolone susceptibility

J. Wain, I. Charles, D. Turner, 2020, The Journal of antimicrobial chemotherapy.

Exploratory analysis and error modeling of a sequencing technology

Irina I. Abnizova, Heng Li, Tom Skelly, 2016, bioRxiv.

iCLIP - Transcriptome-wide Mapping of Protein-RNA Interactions with Individual Nucleotide Resolution

Blaz Zupan, Nicholas M. Luscombe, Jernej Ule, 2011, Journal of visualized experiments : JoVE.

CLIP: construction of cDNA libraries for high-throughput sequencing from RNAs cross-linked to proteins in vivo.

J. Ule, D. Turner, James R. Tollervey, 2009, Methods.

EpiChIP: gene-by-gene quantification of epigenetic modification levels

Pietro Liò, Sarah A. Teichmann, Muxin Gu, 2010, Nucleic acids research.

Rapid Diagnosis of Lower Respiratory Infection using Nanopore-based Clinical Metagenomics

Richard M. Leggett, Justin O’Grady, Gemma L. Kay, 2018, bioRxiv.

Complete assembly of novel environmental bacterial genomes by MinIONTM sequencing

D. Turner, S. Juul, Xiaoguang Dai, 2015, bioRxiv.

High-throughput haplotype determination over long distances by haplotype fusion PCR and ligation haplotyping

M. Hurles, D. Turner, 2009, Nature Protocols.

Amplification-free library preparation for paired-end Illumina sequencing.

D. Turner, I. Kozarewa, 2011, Methods in molecular biology.

Behavior and Target Site Selection of Conjugative Transposon Tn916 in Two Different Strains of Toxigenic Clostridium difficile

Gemma C. Langridge, D. Turner, A. Roberts, 2012, Applied and Environmental Microbiology.

Genome-scale RNAi screens for high-throughput phenotyping in bloodstream-form African trypanosomes

D. Turner, M. Berriman, C. Hertz-Fowler, 2014, Nature Protocols.

Retrospective Application of Transposon-Directed Insertion Site Sequencing to a Library of Signature-Tagged Mini-Tn5Km2 Mutants of Escherichia coli O157:H7 Screened in Cattle

Gemma C. Langridge, Roy R. Chaudhuri, D. Turner, 2011, Journal of bacteriology.

Off Earth Identification of Bacterial Populations Using 16S rDNA Nanopore Sequencing

Kristen K. John, D. Turner, B. Paten, 2020, Genes.

96-plex molecular barcoding for the Illumina Genome Analyzer.

Iwanka Kozarewa, D. Turner, I. Kozarewa, 2011, Methods in molecular biology.

A Barcode Screen for Epigenetic Regulators Reveals a Role for the NuB4/HAT-B Histone Acetyltransferase Complex in Histone Turnover

T. Lenstra, F. Holstege, D. Turner, 2011, PLoS genetics.

Exploration of the propagation of transpovirons within Mimiviridae reveals a unique example of commensalism in the viral world

D. Turner, J. Claverie, C. Abergel, 2019, The ISME Journal.

Low-bias, strand-specific transcriptome Illumina sequencing by on-flowcell reverse transcription (FRT-seq)

Lira Mamanova, Daniel J Turner, D. Turner, 2011, Nature Protocols.

CpG islands influence chromatin structure via the CpG-binding protein Cfp1

Robert S. Illingworth, A. Bird, D. Turner, 2010, Nature.

CLIP: construction of cDNA libraries for high-throughput sequencing from RNAs cross-linked to proteins in vivo.

J. Ule, D. Turner, James R. Tollervey, 2009, Methods.

Orphan CpG Islands Identify Numerous Conserved Promoters in the Mammalian Genome

Robert S. Illingworth, A. Bird, D. Turner, 2010, PLoS genetics.

High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome.

D. Turner, M. Berriman, C. Hertz-Fowler, 2011, Genome research.

Real-time, portable genome sequencing for Ebola surveillance

C. V. Williams, N. Loman, J. Quick, 2016, Nature.

CEP152 is a genome maintenance protein disrupted in Seckel syndrome

Martin S. Taylor, J. Aerts, M. Hurles, 2011, Nature Genetics.

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants.

J. Wain, I. Charles, D. Turner, 2009, Genome research.

Paternally inherited cis-regulatory structural variants are associated with autism

S. Scherer, J. Sebat, L. Iakoucheva, 2018, Science.

Target-enrichment strategies for next-generation sequencing

J. Shendure, D. Turner, C. Scott, 2010, Nature Methods.

Genetic basis of Y-linked hearing impairment.

Tomas W. Fitzgerald, C. Tyler-Smith, N. Carter, 2013, American journal of human genetics.

Retrospective Application of Transposon-Directed Insertion Site Sequencing to a Library of Signature-Tagged Mini-Tn5Km2 Mutants of Escherichia coli O157:H7 Screened in Cattle

D. Turner, D. Maskell, N. Thomson, 2011, Journal of bacteriology.

Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes

D. Kwiatkowski, H. Swerdlow, D. Turner, 2012, BMC Genomics.