He Huang

发表

Statistical potential‐based amino acid similarity matrices for aligning distantly related protein sequences

Yen Hock Tan, He Huang, D. Kihara, 2006, Proteins.

αC helix as a switch in the conformational transition of Src/CDK-like kinase domains.

Bradley M Dickson, Carol Beth Post, Robert D Skeel, 2012, The journal of physical chemistry. B.

A Novel Index of Contact Frequency from Noise Protein–Protein Interaction Data Help for Accurate Interface Residue Pair Prediction

He Huang, Yanfen Lyu, Xinqi Gong, 2020, Interdisciplinary Sciences: Computational Life Sciences.

Folding Simulations for Proteins with Diverse Topologies Are Accessible in Days with a Physics-Based Force Field and Implicit Solvent

He Huang, C. Simmerling, James Maier, 2014, Journal of the American Chemical Society.

Evaluating the dynamics and electrostatic interactions of folded proteins in implicit solvents

He Huang, Amitava Roy, C. Post, 2016, Protein science : a publication of the Protein Society.

Cyclic peptides: backbone rigidification and capability of mimicking motifs at protein-protein interfaces.

He Huang, Yu-Shan Lin, J. Miao, 2020, Physical chemistry chemical physics : PCCP.

Amino-Acid Network Clique Analysis of Protein Mutation Non-Additive Effects: A Case Study of Lysozyme

He Huang, D. Ming, Rui Chen, 2018, International journal of molecular sciences.

ff19SB: Amino-acid specific protein backbone parameters trained against quantum mechanics energy surfaces in solution.

He Huang, C. Simmerling, Koushik Kasavajhala, 2019, Journal of chemical theory and computation.

Elucidating Solution Structures of Cyclic Peptides Using Molecular Dynamics Simulations.

He Huang, Yu-Shan Lin, J. Miao, 2021, Chemical reviews.

All-atom adaptively biased path optimization of Src kinase conformational inactivation: Switched electrostatic network in the concerted motion of αC helix and the activation loop.

He Huang, C. Post, Heng Wu, 2020, The Journal of chemical physics.

Amino-acid network clique analysis of protein mutation correlation effects: a case study of lysozme

He Huang, D. Ming, Rui Chen, 2018, 1804.05175.

Analysis of the relationships between evolvability, thermodynamics, and the functions of intrinsically disordered proteins/regions

He Huang, Akinori Sarai, He Huang, 2012, Comput. Biol. Chem..

A Novel Index of Contact Frequency from Noise Protein–Protein Interaction Data Help for Accurate Interface Residue Pair Prediction

He Huang, Yanfen Lyu, Xinqi Gong, 2020, Interdisciplinary Sciences: Computational Life Sciences.

Fast Pairwise Approximation of Solvent Accessible Surface Area for Implicit Solvent Simulations of Proteins on CPUs and GPUs.

Carlos Simmerling, He Huang, C. Simmerling, 2018, Journal of chemical theory and computation.

A Review of Protein Inter-residue Distance Prediction

He Huang, Xinqi Gong, 2020 .

A Comparison of Three Perturbation Molecular Dynamics Methods for Modeling Conformational Transitions.

He Huang, Carol Beth Post, Elif Ozkirimli, 2009, Journal of chemical theory and computation.