Jian Peng

发表

Exploiting ontology graph for predicting sparsely annotated gene function

Bonnie Berger, Jian Peng, ChengXiang Zhai, 2015, Bioinform..

REINAM: reinforcement learning for input-grammar inference

Tao Xie, Dawn Xiaodong Song, Wei Yang, 2019, ESEC/SIGSOFT FSE.

Learning structural motif representations for efficient protein structure search

Jian Peng, Yang Liu, Jian Peng, 2017 .

Characterization of SARS-CoV-2 viral diversity within and across hosts

Jian Peng, M. El-Kebir, P. Sashittal, 2020, bioRxiv.

Deriving high-spatiotemporal-resolution leaf area index for agroecosystems in the U.S. Corn Belt using Planet Labs CubeSat and STAIR fusion data

Laura F. Gentry, Jian Peng, K. Guan, 2020 .

Typing tumors using pathways selected by somatic evolution

Justin K. Huang, T. Ideker, Jianzhu Ma, 2018, Nature Communications.

Reconstructing spatial organizations of chromosomes through manifold learning

Jian Peng, Jianyang Zeng, Hailin Hu, 2018, Nucleic acids research.

GEM: A manifold learning based framework for reconstructing spatial organizations of chromosomes

Jian Peng, T. Kaplan, Jianyang Zeng, 2017, bioRxiv.

DPPred: An Effective Prediction Framework with Concise Discriminative Patterns

Jiawei Han, Jinfeng Xiao, Jingbo Shang, 2016, IEEE Transactions on Knowledge and Data Engineering.

Next Decade’s AI-Based Drug Development Features Tight Integration of Data and Computation

Jianzhu Ma, Jian Peng, Yunan Luo, 2022, Health Data Science.

Stratification of amyotrophic lateral sclerosis patients: a crowdsourcing approach

Donna E. Dillenberger, R. Norel, Jian Peng, 2018, bioRxiv.

Few-shot learning creates predictive models of drug response that translate from high-throughput screens to individual patients

Roded Sharan, Jian Peng, Marc Hafner, 2021, Nature Cancer.

Identification of Pathways Associated with Chemosensitivity through 2 Network Embedding 3 4

Edward W. Huang, Sheng Wang, Jian Peng, 2017 .

Metabolic activity organizes olfactory representations

Alexander B. Wiltschko, Wesley Wei Qian, Brian K. Lee, 2022, bioRxiv.

Stratification of amyotrophic lateral sclerosis patients: a crowdsourcing approach

Jung-Hsien Chiang, Devin C. Koestler, Celine Vens, 2018, bioRxiv.

Metabolic activity organizes olfactory representations

Alexander B. Wiltschko, Wesley Wei Qian, Brian K. Lee, 2022, bioRxiv.

A marine microbiome antifungal targets urgent-threat drug-resistant fungi

Spencer S. Ericksen, Doug R. Braun, Jian Peng, 2020, Science.

DREAM Community. Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clinical trial

Stephen R. Piccolo, Suleiman A. Khan, Luke N. Kumar, 2016 .

Proximal Exploration for Model-guided Protein Sequence Design

Jianzhu Ma, Jian Peng, Jiahan Li, 2022, bioRxiv.

Efficient Competitive Self-Play Policy Optimization pdf

Yuan Zhou, Yuanyi Zhong, Jian Peng, 2020, ArXiv.

Generalizable and Scalable Visualization of Single-Cell Data Using Neural Networks.

Bonnie Berger, Hyunghoon Cho, Jian Peng, 2018, Cell systems.

A high-performance and in-season classification system of field-level crop types using time-series Landsat data and a machine learning approach

Shaowen Wang, Jian Peng, Yaping Cai, 2018, Remote Sensing of Environment.

Integrating thermodynamic and sequence contexts improves protein-RNA binding prediction

Yang Liu, Xiaoming Zhao, Yunan Luo, 2019, PLoS Comput. Biol..

Typing tumors using pathways selected by somatic evolution

Justin K. Huang, T. Ideker, Jianzhu Ma, 2018, Nature Communications.

A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information

Jian Peng, Jingtian Zhou, Yunan Luo, 2017, Nature Communications.

Identification of pathways associated with chemosensitivity through network embedding

Sheng Wang, Saurabh Sinha, Liewei Wang, 2017, bioRxiv.

Comprehensive interactome profiling of the human Hsp70 network highlights functional differentiation of J domains.

Wesley Wei Qian, A. Gingras, M. Lam, 2021, Molecular cell.

Toward building a transparent statistical model for improving crop yield prediction: Modeling rainfed corn in the U.S

Jian Peng, Bo Li, Kaiyu Guan, 2019, Field Crops Research.

Integrating satellite and climate data to predict wheat yield in Australia using machine learning approaches

Senthold Asseng, David B. Lobell, Jian Peng, 2018, Agricultural and Forest Meteorology.

Robust single-cell Hi-C clustering by convolution- and random-walk–based imputation

Jianzhu Ma, Jesse R. Dixon, Jian Peng, 2019, Proceedings of the National Academy of Sciences.

Low-Density Locality-Sensitive Hashing Boosts Metagenomic Binning

B. Berger, Jian Peng, Jianyang Zeng, 2016, RECOMB.

ECNet is an evolutionary context-integrated deep learning framework for protein engineering

Wesley Wei Qian, Jian Peng, Yang Liu, 2021, Nature Communications.

Enhancing Evolutionary Couplings with Deep Convolutional Neural Networks

Bonnie Berger, Yang Liu, Qing Ye, 2017, Cell systems.

Mitigating Data Scarcity in Protein Binding Prediction Using Meta-Learning

T. Ideker, Jianzhu Ma, Jian Peng, 2019, bioRxiv.

Network-assisted target identification for haploinsufficiency and homozygous profiling screens

Jian Peng, Sheng Wang, Sheng Wang, 2017, PLoS Comput. Biol..

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Amir K. Foroushani, Yuanfang Guan, Jaewoo Kang, 2019, Nature Communications.

A large-scale systematic survey of SARS-CoV-2 antibodies reveals recurring molecular features

Jian Peng, N. Wu, M. Yuan, 2021, bioRxiv.

When causal inference meets deep learning

Jian Peng, Jianzhu Ma, Yunan Luo, 2020, Nature Machine Intelligence.

Compact Integration of Multi-Network Topology for Functional Analysis of Genes.

Bonnie Berger, Hyunghoon Cho, Jian Peng, 2016, Cell systems.

Learning Self-Imitating Diverse Policies pdf

Qiang Liu, Jian Peng, Tanmay Gangwani, 2018, ICLR.

Learning Belief Representations for Imitation Learning in POMDPs

Jian Peng, Qiang Liu, Joel Lehman, 2019, UAI.

DWCox: A density-weighted Cox model for outlier-robust prediction of prostate cancer survival

Doris Xin, Sheng Wang, Jian Peng, 2016, F1000Research.

State-only Imitation with Transition Dynamics Mismatch pdf

Tanmay Gangwani, Jian Peng, Jian Peng, 2020, ICLR.

Meta-Path Guided Embedding for Similarity Search in Large-Scale Heterogeneous Information Networks pdf

Jiawei Han, Jian Peng, Jialu Liu, 2016, ArXiv.

HeteSpaceyWalk: A Heterogeneous Spacey Random Walk for Heterogeneous Information Network Embedding

Yu He, Hao Peng, Cheng Ji, 2019, CIKM.

Harnessing Distribution Ratio Estimators for Learning Agents with Quality and Diversity pdf

Tanmay Gangwani, Yuan Zhou, Jian Peng, 2020, CoRL.

Hunting for Dark Matter Subhalos in Strong Gravitational Lensing with Neural Networks

Jian Peng, Hang Yu, J. Lin, 2020, 2010.12960.

Characterizing Attacks on Deep Reinforcement Learning pdf

Mingjie Sun, Jinfeng Yi, Dawn Song, 2019, AAMAS.

Anchor Box Optimization for Object Detection

Lei Zhang, Jian Peng, Jianfeng Wang, 2018, 2020 IEEE Winter Conference on Applications of Computer Vision (WACV).

STAIR: A generic and fully-automated method to fuse multiple sources of optical satellite data to generate a high-resolution, daily and cloud-/gap-free surface reflectance product

Jian Peng, Yunan Luo, Kaiyu Guan, 2018, Remote Sensing of Environment.

Learning to Explore with Meta-Policy Gradient pdf

Qiang Liu, Jian Peng, Liang Zhao, 2018, ICML 2018.

A Chance-Constrained Generative Framework for Sequence Optimization

Sen Song, Jian Peng, Xianggen Liu, 2020, ICML.

Evolutionary context-integrated deep sequence modeling for protein engineering

Yang Liu, Huimin Zhao, Jian Peng, 2020, bioRxiv.

Metabolic activity organizes olfactory representations

Alexander B. Wiltschko, Wesley Wei Qian, Brian K. Lee, 2022, bioRxiv.

MACFP: Maximal Approximate Consecutive Frequent Pattern Mining under Edit Distance

Jiawei Han, Jian Peng, Jingbo Shang, 2016, SDM.

Deciphering signaling specificity with interpretable deep neural networks

T. Ideker, Jianzhu Ma, Jian Peng, 2018, bioRxiv.

Learning structural motif representations for efficient protein structure search

Yang Liu, Jian Peng, Qing Ye, 2017, bioRxiv.

Learning Guidance Rewards with Trajectory-space Smoothing pdf

Yuan Zhou, Tanmay Gangwani, Jian Peng, 2020, NeurIPS.

Thresholding Bandit with Optimal Aggregate Regret

Yuan Zhou, Jian Peng, Chao Tao, 2019, NeurIPS.

Jumper enables discontinuous transcript assembly in coronaviruses

Jian Peng, M. El-Kebir, P. Sashittal, 2021, Nature Communications.

SemRegex: A Semantics-Based Approach for Generating Regular Expressions from Natural Language Specifications

Tao Xie, Dongmei Zhang, Ting Liu, 2018, EMNLP.

HiCluster: A Robust Single-Cell Hi-C Clustering Method Based on Convolution and Random Walk

Terrence J. Sejnowski, Jian Peng, Jesse R. Dixon, 2018 .

cube 2 net : E icient ality Network Construction with Data Cube Organization

Jiawei Han, Jian Peng, Carl Yang, 2018 .

Bermuda: de novo assembly of transcripts with new insights for handling uneven coverage

Jian Peng, Sheng Wang, Jianzhu Ma, 2015, BCB.

Bermuda: Bidirectional de novo assembly of transcripts with new insights for handling uneven coverage

Jianzhu Ma, Jinbo Xu, Sheng Wang, 2015, 1506.05538.

Low-Density Locality-Sensitive Hashing Boosts Metagenomic Binning.

B. Berger, Jian Peng, Jianyang Zeng, 2016, Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB.

Bayesian information sharing enhances detection of regulatory associations in rare cell types

Jian Peng, Hyunghoon Cho, Alexander P. Wu, 2021, Bioinform..

Deep functional synthesis: a machine learning approach to gene functional enrichment

Sheng Wang, Jianzhu Ma, Trey Ideker, 2019, bioRxiv.

Batch Equalization with a Generative Adversarial Network

Subhashini Venugopalan, Arunachalam Narayanaswamy, Jian Peng, 2020, bioRxiv.

Compact Integration of Multi-Network Topology for Functional Analysis of Genes.

Hyunghoon Cho, B. Berger, Jian Peng, 2016, Cell systems.

Off-Policy Interval Estimation with Lipschitz Value Iteration pdf

Qiang Liu, Yihao Feng, Na Zhang, 2020, NeurIPS.

2016 Ieee International Conference on Big Data (big Data) Exploiting Temporal Divergence of Topic Distributions for Event Detection

Jian Peng, ChengXiang Zhai, Aston Zhang, 2022 .

Estimating the Partition Function by Discriminance Sampling

John W. Fisher, Jian Peng, Qiang Liu, 2015, UAI.

A Chance-Constrained Generative Framework for Sequence Optimization

Sen Song, Qiang Liu, Jian Peng, 2020, ICML.

Mitigating Data Scarcity in Protein Binding Prediction Using Meta-Learning

T. Ideker, Jianzhu Ma, Jian Peng, 2019, bioRxiv.