R. Rentzsch

发表

A large-scale evaluation of computational protein function prediction

Daniel W. A. Buchan, Thomas A. Hopf, Mark N. Wass, 2013, Nature Methods.

Domain-based and family-specific sequence identity thresholds increase the levels of reliable protein function transfer.

David A. Lee, C. Orengo, R. Rentzsch, 2009, Journal of molecular biology.

GeMMA: functional subfamily classification within superfamilies of predicted protein structural domains

David A. Lee, C. Orengo, R. Rentzsch, 2009, Nucleic acids research.

Protein function prediction--the power of multiplicity.

C. Orengo, R. Rentzsch, 2009, Trends in biotechnology.

Domain Family Analyses to Understand Protein Function Evolution

C. Orengo, R. Rentzsch, J. A. Ranea, 2010 .

PaPrBaG: A random forest approach for the detection of novel pathogens from NGS data

R. Rentzsch, B. Renard, C. Deneke, 2016 .

PaPrBaG: A machine learning approach for the detection of novel pathogens from NGS data

Bernhard Y. Renard, Robert Rentzsch, Carlus Deneke, 2017, Scientific Reports.

Protocols to capture the functional plasticity of protein domain superfamilies

Robert Rentzsch, R. Rentzsch, 2012 .

Predicting bacterial virulence factors - evaluation of machine learning and negative data strategies

Bernhard Y. Renard, Carlus Deneke, Andreas Nitsche, 2020, Briefings Bioinform..

Protein function prediction using domain families

Christine A. Orengo, Robert Rentzsch, C. Orengo, 2013, BMC Bioinformatics.

Docking small peptides remains a great challenge: an assessment using AutoDock Vina

Bernhard Y. Renard, Robert Rentzsch, R. Rentzsch, 2015, Briefings Bioinform..

Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis

Ian Sillitoe, Christine A. Orengo, Jonathan G. Lees, 2011, Nucleic Acids Res..

DeePaC: Predicting pathogenic potential of novel DNA with reverse-complement neural networks

Bernhard Y. Renard, Robert Rentzsch, Jakub M. Bartoszewicz, 2019, bioRxiv.

DeePaC: Predicting pathogenic potential of novel DNA with a universal framework for reverse-complement neural networks

Jakub M. Bartoszewicz, R. Rentzsch, Bernhard, 2019 .

Extending CATH: increasing coverage of the protein structure universe and linking structure with function

Ian Sillitoe, Janet M. Thornton, Christine A. Orengo, 2010, Nucleic Acids Res..

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures

David A. Lee, Ian Sillitoe, Janet M. Thornton, 2012, Nucleic Acids Res..

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2013, Nucleic Acids Res..