C. Myers

发表

Predicting gene function in a hierarchical context with an ensemble of classifiers

O. Troyanskaya, Y. Guan, C. Myers, 2008, Genome Biology.

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence

Michael I. Jordan, William Stafford Noble, Gert R. G. Lanckriet, 2008, Genome Biology.

Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae

T. Ideker, D. Botstein, K. Dolinski, 2006, Journal of biology.

Genetic interaction networks: toward an understanding of heritability.

C. Myers, B. Andrews, Charles Boone, 2013, Annual review of genomics and human genetics.

Construction and Functional Analysis of Human Genetic Interaction Networks with Genome-wide Association Data

M. Steinbach, Vipin Kumar, C. Myers, 2011, 1101.3343.

Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes

D. Durocher, C. Myers, B. Andrews, 2008, Proceedings of the National Academy of Sciences.

The Genetic Landscape of a Cell

Gary D Bader, Philip M. Kim, Eric D. Spear, 2010, Science.

Using networks to measure similarity between genes: association index selection

C. Myers, A. J. Walhout, J. Bass, 2013, Nature Methods.

A global genetic interaction network maps a wiring diagram of cellular function

Adam P. Rosebrock, Mojca Mattiazzi Usaj, Elizabeth N. Koch, 2016, Science.

An integrated approach to characterize genetic interaction networks in yeast metabolism

S. Oliver, M. Jelasity, C. Myers, 2011, Nature Genetics.

Transcription Factor Activity Mapping of a Tissue-Specific in vivo Gene Regulatory Network.

C. Myers, A. J. Walhout, Carles Pons, 2015, Cell systems.

Synthetic genetic array (SGA) analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe.

C. Myers, B. Andrews, Charles Boone, 2010, Methods in enzymology.

Computationally Driven, Quantitative Experiments Discover Genes Required for Mitochondrial Biogenesis

Olga G. Troyanskaya, A. P. Hayes, Michael Costanzo, 2009, PLoS genetics.

Systematic exploration of essential yeast gene function with temperature-sensitive mutants

Frederick S. Vizeacoumar, Franco J. Vizeacoumar, A. Gingras, 2011, Nature Biotechnology.

Integrating Coexpression Networks with GWAS to Prioritize Causal Genes in Maize.

C. Myers, B. Dilkes, I. Baxter, 2019, The Plant cell.

Evaluation and Design of Genome-Wide CRISPR/SpCas9 Knockout Screens

D. Durocher, C. Myers, J. Moffat, 2017, G3: Genes, Genomes, Genetics.

Exploring whole-genome duplicate gene retention with complex genetic interaction analysis

Alan M. Moses, Mojca Mattiazzi Usaj, Elizabeth N. Koch, 2020, Science.

A gene‐centered C. elegans protein–DNA interaction network provides a framework for functional predictions

C. Myers, Carles Pons, Albertha J. M. Walhout, 2016, Molecular systems biology.

Discovery of biological networks from diverse functional genomic data

Matthew A. Hibbs, K. Dolinski, O. Troyanskaya, 2005, Genome Biology.

Finding function: evaluation methods for functional genomic data

Matthew A. Hibbs, C. Huttenhower, O. Troyanskaya, 2006, BMC Genomics.

Systematic analysis of complex genetic interactions

Attila Balint, Robbie Loewith, Michael Costanzo, 2018, Science.

Pathway-based discovery of genetic interactions in breast cancer

C. Myers, Charles Boone, M. Costanzo, 2017, PLoS genetics.

Broad metabolic sensitivity profiling of a prototrophic yeast deletion collection

Elias W. Krumholz, O. Troyanskaya, C. Myers, 2014, Genome Biology.

YMAP: a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens

D. Thompson, A. Regev, C. Myers, 2014, Genome Medicine.

Functional Annotation of Chemical Libraries across Diverse Biological Processes

Minoru Yoshida, Yoshikazu Ohya, Michael Costanzo, 2017, bioRxiv.

An omics perspective of protein disorder.

Philip M. Kim, C. Myers, J. Bellay, 2012, Molecular bioSystems.

Trans-acting genetic variation affects the expression of adjacent genes

C. Myers, F. W. Albert, Krisna Van Dyke, 2020, bioRxiv.

Integrating yeast chemical genomics and mammalian cell pathway analysis

Sheena C. Li, Scott W. Simpkins, C. Myers, 2019, Acta Pharmacologica Sinica.

Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias

C. Myers, P. Schnable, L. Flagel, 2016, BMC Genomics.

Comparison of Profile Similarity Measures for Genetic Interaction Networks

Chad L. Myers, Raamesh Deshpande, Benjamin VanderSluis, 2013, PloS one.

Revealing Functional Crosstalk between Distinct Bioprocesses through Reciprocal Functional Tests of Genetically Interacting Genes.

W. Cheng, C. Myers, Tian Xia, 2019, Cell reports.

Chemical genomic guided engineering of gamma-valerolactone tolerant yeast

C. Myers, J. Coon, J. Piotrowski, 2017, bioRxiv.

Chemical genomic guided engineering of gamma-valerolactone tolerant yeast

C. Myers, J. Coon, J. Piotrowski, 2017, bioRxiv.

Integrating co-expression networks with GWAS to prioritize causal genes in maize

C. Myers, B. Dilkes, I. Baxter, 2018, bioRxiv.

Discovering genetic interactions bridging pathways in genome-wide association studies

M. Steinbach, Vipin Kumar, E. Schadt, 2017, Nature Communications.

Discovering Functional Modules across Diverse Maize Transcriptomes Using COB, the Co-Expression Browser

Nathan M. Springer, C. Myers, N. Springer, 2014, PloS one.

Association Analysis for Real-valued Data : Definitions and Application to Microarray Data

M. Steinbach, Vipin Kumar, G. Pandey, 2008 .

Domain Insertion Permissibility is a Measure of Engineerable Allostery in Ion Channels

C. Myers, Willow Coyote-Maestas, Daniel Schmidt, 2018, bioRxiv.

Chapter 6 – Genetic Networks

C. Myers, B. Andrews, Charles Boone, 2013 .

A Genomewide Functional Network for the Laboratory Mouse

Yuanfang Guan, Olga G. Troyanskaya, Carol J. Bult, 2008, PLoS Comput. Biol..

Systematic identification of pleiotropic genes from genetic interactions

Elizabeth N. Koch, C. Myers, B. Andrews, 2017, bioRxiv.

Integration of Differential Gene-combination Search and Gene Set Enrichment Analysis: A General Approach

M. Steinbach, Vipin Kumar, C. Myers, 2011, 1101.3474.

Genetic interaction mapping and exon-resolution functional genomics with a hybrid Cas9–Cas12a platform

Henry N. Ward, B. Blencowe, C. Myers, 2020, Nature Biotechnology.

Systematic analysis of bypass suppression of essential genes

C. Myers, P. Aloy, B. Andrews, 2020, Molecular systems biology.

The Parkinson’s disease protein alpha-synuclein is a modulator of processing bodies and mRNA stability

D. Bartel, C. Myers, S. Sunyaev, 2022, Cell.

EXO1 resection at G-quadruplex structures facilitates resolution and replication

C. Myers, A. Bielinsky, E. Hendrickson, 2020, Nucleic acids research.

Context-dependent regulation of ferroptosis sensitivity.

C. Myers, J. Moffat, Charles Boone, 2022, Cell chemical biology.

Synthetic genetic array analysis for global mapping of genetic networks in yeast.

C. Myers, B. Andrews, Charles Boone, 2014, Methods in molecular biology.

Linking Genetics to Structural Biology: Complex Heterozygosity Screening with Actin Alanine Scan Alleles Identifies Functionally Related Surfaces on Yeast Actin

C. Myers, B. Haarer, Carles Pons, 2014, G3: Genes, Genomes, Genetics.

Quantitative Yeast Phenomics: Systematic Single Cell Analysis of DNA Damage Foci

Grant W. Brown, Elizabeth N. Koch, R. Mitra, 2016 .

Domain insertion permissibility-guided engineering of allostery in ion channels

C. Myers, Willow Coyote-Maestas, Daniel Schmidt, 2019, Nature Communications.

Y[subscript MAP]: a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens

A. Regev, C. Myers, Dawn-Anne Thompson, 2014 .

Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype

Grant W. Brown, C. Myers, K. Shirahige, 2012, The EMBO journal.

Nearest Neighbor Networks: clustering expression data based on gene neighborhoods

Matthew A. Hibbs, Kellen L. Olszewski, H. Coller, 2007, BMC Bioinformatics.

N-terminal acetylation shields proteins from degradation and promotes age-dependent motility and longevity

C. Myers, J. Moffat, A. Whitworth, 2022, bioRxiv.

Repression of essential cell cycle genes increases cellular fitness

C. Myers, B. Andrews, Charles Boone, 2022, PLoS genetics.

Experimental validation of bioPIXIE prediction for the biological role of YPL017C

Kara Dolinski, Olga G. Troyanskaya, Chad L. Myers, 2011 .

Systems‐level transcriptional regulation of Caenorhabditis elegans metabolism

C. Myers, Wen Wang, Albertha J. M. Walhout, 2022, bioRxiv.

Correction: Discovering Functional Modules across Diverse Maize Transcriptomes Using COB, the Co-Expression Browser

C. Myers, N. Springer, R. Schaefer, 2015, PloS one.

Accumulation of heme biosynthetic intermediates contributes to the antibacterial action of the metalloid tellurite

Scott W. Simpkins, H. Mori, C. Myers, 2017, Nature Communications.

A New Natural Product Analog of Blasticidin S Reveals Cellular Uptake Facilitated by the NorA Multidrug Transporter

Scott W. Simpkins, C. Myers, C. Bewley, 2017, Antimicrobial Agents and Chemotherapy.

Probing ion channel functional architecture and domain recombination compatibility by massively parallel domain insertion profiling

Kenneth A. Matreyek, C. Myers, V. Carnevale, 2021, Nature Communications.

Survival-based CRISPR genetic screens across a panel of permissive cell lines identify common and cell-specific SARS-CoV-2 host factors

Henry N. Ward, B. Blencowe, S. Pu, 2022, Heliyon.

Environmental robustness of the global yeast genetic interaction network

Elizabeth N. Koch, C. Myers, P. Aloy, 2021, Science.

Unbiased screening of marine sponge extracts for anti-inflammatory agents combined with chemical genomics identifies girolline as an inhibitor of protein synthesis.

Sheena C. Li, C. Myers, Charles Boone, 2014, ACS chemical biology.

Padanamides A and B, highly modified linear tetrapeptides produced in culture by a Streptomyces sp. isolated from a marine sediment.

C. Myers, Charles Boone, R. Deshpande, 2011, Organic letters.

Systematic exploration of synergistic drug pairs

Michael Costanzo, Corey Nislow, Murat Tasan, 2011, Molecular systems biology.

Systematic mapping of genetic interactions for de novo fatty acid synthesis identifies C12orf49 as a regulator of lipid metabolism

Anne-Claude Gingras, Zhen-Yuan Lin, Michael Costanzo, 2020, Nature metabolism.

Systematic mapping of genetic interactions for de novo fatty acid synthesis identifies C12orf49 as a regulator of lipid metabolism

A. Gingras, C. Myers, J. Dennis, 2019, Nature Metabolism.

Evaluation and Design of Genome-Wide CRISPR / SpCas 9 Knockout Screens

D. Durocher, C. Myers, J. Moffat, 2017 .

Coculture of Marine Invertebrate-Associated Bacteria and Interdisciplinary Technologies Enable Biosynthesis and Discovery of a New Antibiotic, Keyicin.

Doug R. Braun, Scott W. Simpkins, C. Myers, 2017, ACS chemical biology.

SGAtools: one-stop analysis and visualization of array-based genetic interaction screens

Leopold Parts, Omar Wagih, Michael Costanzo, 2013, Nucleic Acids Res..

Quantitative analysis of fitness and genetic interactions in yeast on a genome scale

Gary D Bader, Matthew A. Hibbs, Grant W. Brown, 2010, Nature Methods.

Correction: Maize Gene Atlas Developed by RNA Sequencing and Comparative Evaluation of Transcriptomes Based on RNA Sequencing and Microarrays

C. Myers, R. Sekhon, C. Buell, 2014, PLoS ONE.

Maize Gene Atlas Developed by RNA Sequencing and Comparative Evaluation of Transcriptomes Based on RNA Sequencing and Microarrays

C. Robin Buell, Chad L. Myers, Shawn M. Kaeppler, 2013, PloS one.

Genomic Distribution of Maize Facultative Heterochromatin Marked by Trimethylation of H3K27[W]

Nathan M. Springer, Steven R. Eichten, C. Myers, 2013, Plant Cell.

Adenovirus type 5 exerts genome-wide control over cellular programs governing proliferation, quiescence, and survival

S. J. Flint, H. Coller, C. Myers, 2007, Genome Biology.

The highly buffered Arabidopsis immune signaling network conceals the functions of its components

Jonathan D. G. Jones, C. Myers, F. Katagiri, 2017, PLoS genetics.

Global Linkage Map Connects Meiotic Centromere Function to Chromosome Size in Budding Yeast

C. Myers, B. Andrews, Charles Boone, 2013, G3: Genes, Genomes, Genetics.

Unligated Okazaki Fragments Induce PCNA Ubiquitination and a Requirement for Rad59-Dependent Replication Fork Progression

Elizabeth N. Koch, C. Myers, Charles Boone, 2013, PloS one.

Exploring Quantitative Yeast Phenomics with Single-Cell Analysis of DNA Damage Foci.

Grant W. Brown, Elizabeth N. Koch, R. Mitra, 2016, Cell systems.

Leveraging machine learning essentiality predictions and chemogenomic interactions to identify antifungal targets

Matthew J. O’Meara, A. Gingras, C. Myers, 2021, Nature Communications.

Improving Measures of Chemical Structural Similarity Using Machine Learning on Chemical–Genetic Interactions

Sheena C. Li, Scott W. Simpkins, C. Myers, 2021, J. Chem. Inf. Model..

Nearest Neighbor Networks: clustering expression data based on gene neighborhoods

Olga G. Troyanskaya, Curtis Huttenhower, Nathan O. Siemers, 2007, BMC Bioinformatics.

Charting the genetic interaction map of a cell.

Michael Costanzo, Charles Boone, Anastasia Baryshnikova, 2011, Current opinion in biotechnology.

A Scalable Approach for Discovering Conserved Active Subnetworks across Species

Wei-Shou Hu, Catherine M. Verfaillie, Chad L. Myers, 2010, PLoS Comput. Biol..

Visualization-based discovery and analysis of genomic aberrations in microarray data

Xing Chen, Olga G. Troyanskaya, Chad L. Myers, 2005, BMC Bioinformatics.

Accurate detection of aneuploidies in array CGH and gene expression microarray data

Sun-Yuan Kung, Olga G. Troyanskaya, Chad L. Myers, 2004, Bioinform..

Skp, Cullin, F-box (SCF)-Met30 and SCF-Cdc4-Mediated Proteolysis of CENP-A Prevents Mislocalization of CENP-A for Chromosomal Stability in Budding Yeast

P. Meltzer, C. Myers, R. Baker, 2020, PLoS genetics.

Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations[C][W]

Nathan M. Springer, Steven R. Eichten, C. Myers, 2013, Plant Cell.

corresponds to the product of the proportion of shared nodes between

C. Myers, A. J. Walhout, Alos Diallo, 2014 .

Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network.

Timothy R. Hughes, Chad L. Myers, Justin Nelson, 2013, Molecular cell.

Mechanisms underlying robustness and tunability in a plant immune signaling network.

C. Myers, Yungil Kim, F. Katagiri, 2014, Cell host & microbe.

Distinct Types of Disorder in the Human Proteome: Functional Implications for Alternative Splicing

TaeHyung Kim, Chad L. Myers, Philip M. Kim, 2013, PLoS Comput. Biol..

MOSAIC: a chemical-genetic interaction data repository and web resource for exploring chemical modes of action

Minoru Yoshida, Chad L. Myers, Hamid Safizadeh, 2017, bioRxiv.

Exploring the functional landscape of gene expression: directed search of large microarray compendia

Kai Li, Olga G. Troyanskaya, Curtis Huttenhower, 2007, Bioinform..

Single-cell gene expression analyses reveal distinct self-renewing and proliferating subsets in the leukemia stem cell compartment in acute myeloid leukemia.

K. Sachs, C. Myers, D. Largaespada, 2019, Cancer research.

Machine learning investigation of gene expression datasets reveals TP53 mutant-like AML with wild type TP53 and poor prognosis

C. Myers, Z. Sachs, L. Baughn, 2023, bioRxiv.

Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs.

A. C. Douglas, C. Myers, B. Andrews, 2012, Genome research.

GOLEM: an interactive graph-based gene-ontology navigation and analysis tool

Olga G. Troyanskaya, Curtis Huttenhower, Chad L. Myers, 2006, BMC Bioinformatics.

Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat

Marisa E. Miller, C. Myers, J. Vogel, 2021, bioRxiv.

A Whole Genome Screen for Minisatellite Stability Genes in Stationary-Phase Yeast Cells

C. Myers, Benjamin VanderSluis, D. Kirkpatrick, 2013, G3: Genes, Genomes, Genetics.

Genomics in 2011: challenges and opportunities

J. Rinn, C. Huttenhower, O. Harismendy, 2011, Genome Biology.

Global analysis of gene function in yeast by quantitative phenotypic profiling

Gavin Sherlock, Olga G Troyanskaya, Chad L Myers, 2006, Molecular systems biology.

Unraveling gene function in agricultural species using gene co-expression networks.

Chad L. Myers, Jean-Michel Michno, C. Myers, 2017, Biochimica et biophysica acta. Gene regulatory mechanisms.

Bringing order to protein disorder through comparative genomics and genetic interactions

Gary D Bader, TaeHyung Kim, Sangjo Han, 2011, Genome Biology.

A scalable method for integration and functional analysis of multiple microarray datasets

Olga G. Troyanskaya, Curtis Huttenhower, Chad L. Myers, 2006, Bioinform..

Integrating Coexpression Networks with GWAS to Prioritize Causal Genes in Maize[OPEN]

Chad L. Myers, Jean-Michel Michno, Ivan Baxter, 2017, Plant Cell.

Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias

Nathan M. Springer, Lex E. Flagel, C. Myers, 2016, BMC Genomics.

Discovering genetic interactions bridging pathways in genome-wide association studies

Eric E Schadt, Michael Costanzo, Charles Boone, 2017, Nature Communications.

Putting genetic interactions in context through a global modular decomposition.

Gowtham Atluri, Sangjo Han, Gaurav Pandey, 2011, Genome research.

The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction

Olga G. Troyanskaya, Curtis Huttenhower, David C. Hess, 2009, Bioinform..

Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis

Kai Li, Olga G. Troyanskaya, Curtis Huttenhower, 2009, PLoS Comput. Biol..

Predicting bioprocess targets of chemical compounds through integration of chemical-genetic and genetic interactions

Minoru Yoshida, Yoshikazu Ohya, Michael Costanzo, 2018, PLoS Comput. Biol..

Predicting bioprocess targets of chemical compounds through integration of chemical-genetic and genetic interaction networks

Minoru Yoshida, Yoshikazu Ohya, Michael Costanzo, 2018 .

Large-scale interpretation of chemical-genetic interaction profiles using a genetic interaction network

Minoru Yoshida, Justin Nelson, Yoshikazu Ohya, 2017, bioRxiv.

BIOINFORMATICS ORIGINAL PAPER doi:10.1093/bioinformatics/btm332 Data and text mining

Olga G. Troyanskaya, Chad L. Myers, O. Troyanskaya, 2022 .

Using BEAN-counter to quantify genetic interactions from multiplexed barcode sequencing experiments

Minoru Yoshida, Henry N. Ward, Raamesh Deshpande, 2019, Nature Protocols.

Efficient strategies for screening large-scale genetic interaction networks

Michael Costanzo, Chad L. Myers, Raamesh Deshpande, 2017, bioRxiv.

Improving prediction of compound function from chemical structure using chemical-genetic networks

Justin Nelson, Chad L. Myers, Hamid Safizadeh, 2017, bioRxiv.

Exploring genetic suppression interactions on a global scale

Mojca Mattiazzi Usaj, Atina G. Coté, A. Murray, 2016, Science.

Mechanism of imidazolium ionic liquids toxicity in Saccharomyces cerevisiae and rational engineering of a tolerant, xylose-fermenting strain

Sheena C. Li, C. Myers, Charles Boone, 2016, Microbial Cell Factories.

Plant-derived antifungal agent poacic acid targets β-1,3-glucan

Irene M Ong, Ashish Ranjan, Yoshikazu Ohya, 2015, Proceedings of the National Academy of Sciences.

Chemical genomic profiling via barcode sequencing to predict compound mode of action.

Sheena C. Li, Scott W. Simpkins, C. Myers, 2015, Methods in molecular biology.

Unraveling the Biology of a Fungal Meningitis Pathogen Using Chemical Genetics

C. Myers, H. Madhani, Benjamin VanderSluis, 2014, Cell.

τ-SGA: synthetic genetic array analysis for systematically screening and quantifying trigenic interactions in yeast

C. Myers, B. Andrews, Charles Boone, 2021, Nature Protocols.

τ-SGA: synthetic genetic array analysis for systematically screening and quantifying trigenic interactions in yeast

C. Myers, B. Andrews, Charles Boone, 2021, Nature Protocols.

Genetic interaction mapping and exon-resolution functional genomics with a hybrid Cas9–Cas12a platform

B. Blencowe, C. Myers, J. Moffat, 2020, Nature Biotechnology.

TheCellMap.org: A Web-Accessible Database for Visualizing and Mining the Global Yeast Genetic Interaction Network

C. Myers, B. Andrews, Charles Boone, 2017, G3: Genes, Genomes, Genetics.

Reshaping of the maize transcriptome by domestication

Nathan M. Springer, C. Myers, N. Springer, 2012, Proceedings of the National Academy of Sciences.

Translocon Declogger Ste24 Protects against IAPP Oligomer-Induced Proteotoxicity

D. Pincus, C. Myers, Charles Boone, 2018, Cell.

Integrating genetic and protein-protein interaction networks maps a functional wiring diagram of a cell.

Maximilian Billmann, Michael Costanzo, Henry N. Ward, 2018, Current opinion in microbiology.

Features of the Chaperone Cellular Network Revealed through Systematic Interaction Mapping.

James Vlasblom, C. Myers, Charles Boone, 2017, Cell reports.

Genetic Interactions Implicating Postreplicative Repair in Okazaki Fragment Processing

C. Myers, Charles Boone, M. Costanzo, 2015, PLoS genetics.

Protein Complexes are Central in the Yeast Genetic Landscape

Gary D. Bader, Gary D Bader, Michael Costanzo, 2011, PLoS Comput. Biol..

DRYGIN: a database of quantitative genetic interaction networks in yeast

Gary D. Bader, Gary D Bader, Judice L. Y. Koh, 2009, Nucleic Acids Res..

Incorporating functional inter-relationships into protein function prediction algorithms

Vipin Kumar, Gaurav Pandey, Chad L. Myers, 2009, BMC Bioinformatics.

A Genome-Wide Screen Reveals a Role for the HIR Histone Chaperone Complex in Preventing Mislocalization of Budding Yeast CENP-A

D. Landsman, P. Meltzer, C. Myers, 2018, Genetics.

A method for benchmarking genetic screens reveals a predominant mitochondrial bias

Henry N. Ward, C. Myers, J. Moffat, 2021, Molecular systems biology.

Major functional bias for mitochondrial complexes in genome-wide CRISPR screens

Mahfuzur Rahman, Maximilian Billmann, Michael Costanzo, 2020, bioRxiv.

Genetic interactions reveal the evolutionary trajectories of duplicate genes

Michael Costanzo, Charles Boone, Anastasia Baryshnikova, 2010, Molecular systems biology.

An Integrative Multi-Network and Multi-Classifier Approach to Predict Genetic Interactions

Vipin Kumar, Jun Zhu, Gaurav Pandey, 2010, PLoS Comput. Biol..

An association analysis approach to biclustering

Vipin Kumar, Michael S. Steinbach, Gowtham Atluri, 2009, KDD.

Computational analysis of the yeast proteome: understanding and exploiting functional specificity in genomic data.

Curtis Huttenhower, Olga G Troyanskaya, Matthew A. Hibbs, 2009, Methods in molecular biology.

Discovering biological networks from diverse functional genomic data.

Olga G Troyanskaya, Camelia Chiriac, Chad L Myers, 2009, Methods in molecular biology.

Chemical Genomics, Structure Elucidation, and in Vivo Studies of the Marine-Derived Anticlostridial Ecteinamycin.

Doug R. Braun, Scott W. Simpkins, H. Mori, 2017, ACS chemical biology.

Controlling microbial contamination during hydrolysis of AFEX-pretreated corn stover and switchgrass: effects on hydrolysate composition, microbial response and fermentation

Jeff Piotrowski, Chad L. Myers, Charles Boone, 2015, Biotechnology for Biofuels.

Forazoline A: marine-derived polyketide with antifungal in vivo efficacy.

Doug R. Braun, C. Myers, R. Deshpande, 2014, Angewandte Chemie.

Conserved rules govern genetic interaction degree across species

Elizabeth N. Koch, C. Myers, B. Andrews, 2012, Genome Biology.

Conserved rules govern genetic interaction degree across species

Elizabeth N. Koch, C. Myers, B. Andrews, 2012, Genome Biology.

Supplementary Information an Integrated Approach to Characterize Genetic Interaction Networks in Yeast Metabolism Supplementary Figures 1-4. Supplementary Tables 1-3. Supplementary Note

S. Oliver, C. Myers, C. Pál, 2022 .

Profiling Bortezomib Resistance Identifies Secondary Therapies in a Mouse Myeloma Model

C. Myers, F. Zhan, R. Deshpande, 2013, Molecular Cancer Therapeutics.

Tools and Technologies Pro fi ling Bortezomib Resistance Identi fi es Secondary Therapies in a Mouse Myeloma Model

C. Myers, F. Zhan, B. Ness, 2013 .

In Vitro Pluripotent Stem Cell Differentiation to Hepatocyte Ceases Further Maturation at an Equivalent Stage of E15 in Mouse Embryonic Liver Development.

C. Myers, C. Verfaillie, Tineke Notelaers, 2018, Stem cells and development.

Different Modes of Negative Regulation of Plant Immunity by Calmodulin-Related Genes1[OPEN]

C. Myers, J. Glazebrook, F. Katagiri, 2018, Plant Physiology.

Up For A Challenge (U4C): Stimulating innovation in breast cancer genetic epidemiology

Scott M. Williams, J. Witte, E. Feuer, 2017, PLoS genetics.

Genetic architecture of protein and oil content in soybean seed and meal

C. Myers, Q. Song, J. Specht, 2023, The plant genome.

A comparative genomic approach for identifying synthetic lethal interactions in human cancer.

Jeff Piotrowski, Michael Costanzo, Raamesh Deshpande, 2013, Cancer research.

Evaluation and Design of Genome-wide CRISPR/Cas9 Knockout Screens

Keith Lawson, Maximilian Billmann, Michael Aregger, 2017, bioRxiv.

Dbf4-Dependent Kinase (DDK)-Mediated Proteolysis of CENP-A Prevents Mislocalization of CENP-A in Saccharomyces cerevisiae

C. Myers, R. Baker, Charles Boone, 2020, G3.

Transcription Factor Activ ity Mapping of a Tissue-Specific In Vivo Gene Regulatory Network Graphical

C. Myers, A. J. Walhout, Carles Pons, 2015 .

Enhanced yeast one-hybrid (eY1H) assays for high-throughput gene-centered regulatory network mapping

Bryan Lajoie, Chad L Myers, Job Dekker, 2011, Nature Methods.

Subspace Differential Coexpression Analysis: Problem Definition and a General Approach

Vipin Kumar, Michael S. Steinbach, Gang Fang, 2010, Pacific Symposium on Biocomputing.

Analysis of combinatorial CRISPR screens with the Orthrus scoring pipeline

Henry N. Ward, Toshiro K. Ohsumi, B. Blencowe, 2021, Nature Protocols.

Fanconi anemia-associated chromosomal radial formation is dependent on POLθ-mediated alternative end joining.

C. Myers, A. Bielinsky, Colette B. Rogers, 2023, Cell reports.

The biophysical basis of protein domain compatibility in ion channels

Kenneth A. Matreyek, C. Myers, V. Carnevale, 2020, bioRxiv.

Domain insertion permissibility-guided engineering of allostery in ion channels

C. Myers, Willow Coyote-Maestas, Daniel Schmidt, 2019, Nature Communications.

Identification of candidate genes underlying nodulation-specific phenotypes in Medicago truncotula through integration of genome-wide association studies and co-expression networks

C. Myers, R. Stupar, P. Tiffin, 2018, bioRxiv.

Fine-Mapping of 18q21.1 Locus Identifies Single Nucleotide Polymorphisms Associated with Nonsyndromic Cleft Lip with or without Cleft Palate

C. Myers, Wen Wang, A. Mitra, 2016, Front. Genet..

CD69 marks a subpopulation of acute myeloid leukemia with enhanced colony forming capacity and a unique signaling activation state

K. Sachs, C. Myers, Z. Sachs, 2023, Leukemia & lymphoma.

Dynamic decomposition of transcriptome responses during plant effector-triggered immunity revealed conserved responses in two distinct cell populations

C. Myers, D. Igarashi, Kenichi Tsuda, 2023, bioRxiv.

Comparing Host Module Activation Patterns and Temporal Dynamics in Infection by Influenza H1N1 Viruses

Boris M. Hartmann, C. Myers, S. Sealfon, 2021, bioRxiv.

Dimensionality reduction methods for extracting functional networks from large-scale CRISPR screens

Henry N. Ward, Arshia Zernab Hassan, C. Myers, 2023, bioRxiv.

Identification of nodulation‐related genes in Medicago truncatula using genome‐wide association studies and co‐expression networks

C. Myers, R. Stupar, J. Michno, 2020, Plant direct.

Discovering coherent value bicliques in genetic interaction data

Gowtham Atluri, Gaurav Pandey, Chad L. Myers, 2010, KDD 2010.

TR 09-020 Two-Dimensional Association Analysis For Finding Constant Value Biclusters In Real-Valued Data

Vipin Kumar, G. Pandey, C. Myers, 2009 .

Context-sensitive data integration and prediction of biological networks

O. Troyanskaya, C. Myers, 2007, Bioinform..

RNF4 and USP7 cooperate in ubiquitin-regulated steps of DNA replication

C. Myers, Maximilian Billmann, Liangjun Wang, 2023, Open Biology.

Atina G. Coté, A. Meyer, A. Gingras, 2018, Science.

Systematic exploration of synergistic drug pairs

Zohar B. Weinstein, Yo Suzuki, G. Giaever, 2011, Molecular Systems Biology.

Using BEAN-counter to quantify genetic interactions from multiplexed barcode sequencing experiments

Sheena C. Li, Scott W. Simpkins, C. Myers, 2019, Nature Protocols.

Global analysis of gene function in yeast by quantitative phenotypic profiling.

G. Sherlock, O. Troyanskaya, C. Myers, 2006, Molecular systems biology.

A scalable method for integration and functional analysis of multiple microarray datasets

Matthew A. Hibbs, C. Huttenhower, O. Troyanskaya, 2006, Bioinform..

High-throughput drug screening identifies compounds and molecular strategies for targeting proteasome inhibitor-resistant multiple myeloma

C. Myers, B. Ness, T. Xia, 2014, Leukemia.

Scalable CRISPR-Cas9 chemical genetic screens in non-transformed human cells

C. Myers, A. Bielinsky, Ya-Chu Chang, 2022, STAR Protocols.

A scalable platform for efficient CRISPR-Cas9 chemical-genetic screens of DNA damage-inducing compounds

C. Myers, J. Moffat, Charles Boone, 2023, bioRxiv.

Integrating co-expression networks with GWAS detects genes driving elemental accumulation in maize seeds

C. Myers, B. Dilkes, I. Baxter, 2017 .

Unbiased screening of marine sponge extracts for anti-inflammatory agents combined with chemical genomics identifies girolline as an inhibitor of protein synthesis.

Sheena C. Li, C. Myers, Charles Boone, 2014, ACS chemical biology.

Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs.

A. C. Douglas, C. Myers, B. Andrews, 2012, Genome research.

Coculture of Marine Invertebrate-Associated Bacteria and Interdisciplinary Technologies Enable Biosynthesis and Discovery of a New Antibiotic, Keyicin.

Doug R. Braun, Scott W. Simpkins, C. Myers, 2017, ACS chemical biology.

A comparative genomic approach for identifying synthetic lethal interactions in human cancer.

C. Myers, Charles Boone, M. Costanzo, 2013, Cancer research.

Synthetic genetic array (SGA) analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe.

C. Myers, B. Andrews, Charles Boone, 2010, Methods in enzymology.

Integrating co-expression networks with GWAS detects genes 2 driving elemental accumulation in maize seeds 3

C. Myers, I. Baxter, R. Schaefer, 2017 .

Dimensionality reduction methods for extracting functional networks from large‐scale CRISPR screens

Henry N. Ward, Arshia Zernab Hassan, C. Myers, 2023, Molecular Systems Biology.

Reproducibility metrics for context-specific CRISPR screens.

Henry N. Ward, C. Myers, J. Moffat, 2023, Cell systems.

Reproducibility metrics for CRISPR screens

Henry N. Ward, C. Myers, J. Moffat, 2022, bioRxiv.

Using networks to measure similarity between genes: association index selection

C. Myers, A. J. Walhout, Alos Diallo, 2013, Nature Methods.