J. Jumper

发表

A 7 D De novo structure prediction with deep learning based scoring

L. Sifre, K. Simonyan, J. Kirkpatrick, 2022 .

Supporting Online Material Materials and Methods Figs. S1 to S10 Table S1 References Movies S1 to S3 Atomic-level Characterization of the Structural Dynamics of Proteins

Joseph A. Bank, J. A. Bank, R. Dror, 2022 .

Protein structure prediction using multiple deep neural networks in the 13th Critical Assessment of Protein Structure Prediction (CASP13)

Pushmeet Kohli, Demis Hassabis, Karen Simonyan, 2019, Proteins.

Loss of conformational entropy in protein folding calculated using realistic ensembles and its implications for NMR-based calculations

J. Jumper, K. Freed, T. Sosnick, 2014, Proceedings of the National Academy of Sciences.

Highly accurate protein structure prediction with AlphaFold

Oriol Vinyals, K. Kavukcuoglu, D. Hassabis, 2021, Nature.

Oncogenic Mutations Counteract Intrinsic Disorder in the EGFR Kinase and Promote Receptor Dimerization

Eric T. Kim, R. Dror, J. Jumper, 2012, Cell.

Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water

Joshua A. Riback, J. Jumper, K. Freed, 2017, Science.

Maximum-likelihood, self-consistent side chain free energies with applications to protein molecular dynamics

J. Jumper, K. Freed, T. Sosnick, 2016 .

Rotational relaxation in ortho-terphenyl: using atomistic simulations to bridge theory and experiment.

Albert C. Pan, T. Chitra, J. Jumper, 2013, The journal of physical chemistry. B.

A Membrane Burial Potential with H-Bonds and Applications to Curved Membranes and Fast Simulations.

Sheng Wang, J. Jumper, K. Freed, 2018, Biophysical journal.

3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

Andrew M. Waterhouse, D. Hassabis, S. Salzberg, 2022, bioRxiv.

Structure of the PAPP-ABP5 complex reveals mechanism of substrate recognition

J. Jumper, V. Stoll, R. Jain, 2022, Nature Communications.

Highly accurate protein structure prediction for the human proteome

K. Kavukcuoglu, D. Hassabis, A. Senior, 2021, Nature.

Improved protein structure prediction using potentials from deep learning

Demis Hassabis, Karen Simonyan, David T. Jones, 2020, Nature.

Applying and improving AlphaFold at CASP14

Oriol Vinyals, K. Kavukcuoglu, D. Hassabis, 2021, Proteins.

AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models

D. Hassabis, Stig Petersen, Pushmeet Kohli, 2021, Nucleic Acids Res..

Effective gene expression prediction from sequence by integrating long-range interactions

David R. Kelley, Pushmeet Kohli, J. Jumper, 2021, Nature Methods.

Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins

J. Jumper, D. de Sanctis, C. Dessimoz, 2022, Nature Communications.

Protein complex prediction with AlphaFold-Multimer

D. Hassabis, Pushmeet Kohli, A. Pritzel, 2021, bioRxiv.

Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins

J. Jumper, D. de Sanctis, C. Dessimoz, 2021, Nature Communications.

Improved protein structure prediction using potentials from deep learning

David T. Jones, L. Sifre, K. Kavukcuoglu, 2020, Nature.

Accelerating Large Language Model Decoding with Speculative Sampling

Geoffrey Irving, L. Sifre, J. Lespiau, 2023, ArXiv.

Protein structure predictions to atomic accuracy with AlphaFold

D. Hassabis, J. Jumper, 2022, Nature Methods.

Protein structure prediction using multiple deep neural networks in the 13th Critical Assessment of Protein Structure Prediction (CASP13)

Pushmeet Kohli, Demis Hassabis, Karen Simonyan, 2019, Proteins.

Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH

J. Jumper, D. de Sanctis, M. Carroni, 2022, Nature Structural & Molecular Biology.

Structural basis of template strand deoxyuridine promoter recognition by a viral RNA polymerase

J. Jumper, K. Severinov, P. Leiman, 2021, Nature Communications.

Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics

Karl F Freed, Tobin R Sosnick, John M Jumper, 2018, PLoS Comput. Biol..

Inferring a Continuous Distribution of Atom Coordinates from Cryo-EM Images using VAEs pdf

Pushmeet Kohli, Olaf Ronneberger, Jonas Adler, 2021, ArXiv.

Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours

Karl F Freed, Tobin R Sosnick, John M Jumper, 2018, PLoS Comput. Biol..

Free-Standing Kinked Silicon Nanowires for Probing Inter- and Intracellular Force Dynamics.

Bozhi Tian, John F Zimmerman, John M Jumper, 2015, Nano letters.

AlphaFold: Improved protein structure prediction using 1 potentials from deep learning

David T. Jones, L. Sifre, K. Kavukcuoglu, 2019 .

Trajectory-Based Parameterization of a Coarse-Grained Forcefield for High-Thoughput Protein Simulation

Karl F. Freed, Tobin R. Sosnick, John M. Jumper, 2017, bioRxiv.

Atomic-Level Characterization of the Structural Dynamics of Proteins

Joseph A. Bank, J. A. Bank, R. Dror, 2010, Science.

On the Interpretation of Force-Induced Unfolding Studies of Membrane Proteins Using Fast Simulations.

J. Jumper, K. Freed, T. Sosnick, 2019, Biophysical journal.

Response to Comment on “Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water”

Joshua A. Riback, J. Jumper, K. Freed, 2018, Science.

Atomic-Level Characterization of the Structural Dynamics of Proteins

Joseph A. Bank, R. Dror, J. Salmon, 2010, Science.

Accurate proteome-wide missense variant effect prediction with AlphaMissense

D. Hassabis, Pushmeet Kohli, A. Pritzel, 2023, Science.

Rotational relaxation in ortho-terphenyl: using atomistic simulations to bridge theory and experiment.

Albert C. Pan, J. Jumper, D. Shaw, 2013, The journal of physical chemistry. B.

Accurate structure prediction of biomolecular interactions with AlphaFold 3

Ellen D. Zhong, D. Hassabis, Pushmeet Kohli, 2024, Nature.

Structural basis of template strand deoxyuridine promoter recognition by a viral RNA polymerase

J. Jumper, P. Leiman, Alec Fraser, 2021, Nature Communications.