I. Tinoco

发表

Estimation of Secondary Structure in Ribonucleic Acids

I. Tinoco, O. Uhlenbeck, M. Levine, 1971, Nature.

Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies

C. Jarzynski, F. Ritort, I. Tinoco, 2005, Nature.

I. Tinoco, C. Bustamante, 1999, Journal of molecular biology.

Stability of ribonucleic acid double-stranded helices.

I. Tinoco, O. Uhlenbeck, P. Borer, 1974, Journal of molecular biology.

Improved estimation of secondary structure in ribonucleic acids.

D. Crothers, I. Tinoco, O. Uhlenbeck, 1973, Nature: New biology.

Absorbance melting curves of RNA.

I. Tinoco, J. Puglisi, 1989, Methods in enzymology.

RNA folding: Pseudoknots, loops and bulges

I. Tinoco, J. Puglisi, J. Wyatt, 1989, BioEssays : news and reviews in molecular, cellular and developmental biology.

Biological mechanisms, one molecule at a time.

I. Tinoco, R. L. Gonzalez, R. Gonzalez, 2011, Genes & development.

Secondary structure of the Tetrahymena ribosomal RNA intervening sequence: structural homology with fungal mitochondrial intervening sequences.

M. Zuker, I. Tinoco, T. Cech, 1983, Proceedings of the National Academy of Sciences of the United States of America.

Stability of RNA hairpin loops: A6-Cm-U6

I. Tinoco, O. Uhlenbeck, P. Borer, 1973 .

The ion core in RNA folding

I. Tinoco, J. Kieft, 1997, Nature Structural Biology.

RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP

I. Tinoco, C. Bustamante, Wei Cheng, 2006, Nature.

Equilibrium Information from Nonequilibrium Measurements in an Experimental Test of Jarzynski's Equality

I. Tinoco, C. Bustamante, S. Dumont, 2002, Science.

Real-time control of the energy landscape by force directs the folding of RNA molecules

Ignacio Tinoco, Carlos Bustamante, I. Tinoco, 2007, Proceedings of the National Academy of Sciences.

RNA folding causes secondary structure rearrangement.

I. Tinoco, M. Wu, I Tinoco, 1998, Proceedings of the National Academy of Sciences of the United States of America.

RNA pseudoknots. Stability and loop size requirements.

I. Tinoco, J. Puglisi, J. Wyatt, 1990, Journal of molecular biology.

Nucleic Acids: Structures, Properties, and Functions

D. Crothers, I. Tinoco, V. Bloomfield, 2000 .

RNA folding and unfolding.

I. Tinoco, Bibiana Onoa, 2004, Current opinion in structural biology.

Structural and thermodynamic studies on mutant RNA motifs that impair the specificity between a viral replicase and its promoter.

I. Tinoco, C. H. Kim, Chul-Hyun Kim, 2001, Journal of molecular biology.

RNA Structure and Stability

I. Tinoco, J. Nowakowski, 1997 .

RNA structure and NMR spectroscopy

G. Varani, I. Tinoco, Gabriele Varani, 1991, Quarterly Reviews of Biophysics.

Structural Elements in RNA

I. Tinoco, M. Chastain, 1991, Progress in Nucleic Acid Research and Molecular Biology.

Single-molecule mechanical unfolding and folding of a pseudoknot in human telomerase RNA.

I. Tinoco, Gang Chen, J. Wen, 2007, RNA.

RNA structure at high resolution

I. Tinoco, L. X. Shen, Z. Cai, 1995, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

A base-triple structural domain in RNA.

I. Tinoco, M. Chastain, 1992, Biochemistry.

Conformation of an RNA pseudoknot

I. Tinoco, J. Puglisi, J. Wyatt, 1990, Journal of Molecular Biology.

A pseudoknotted RNA oligonucleotide

I. Tinoco, J. Puglisi, J. Wyatt, 1988, Nature.

RNA structure from A to Z.

C. C. Hardin, I. Tinoco, J. Puglisi, 1987, Cold Spring Harbor symposia on quantitative biology.

Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine·guanine base pairs

C. C. Hardin, I. Tinoco, E. Blackburn, 1987, Cell.

Crystal structure of an RNA double helix incorporating a track of non-Watson–Crick base pairs

I. Tinoco, S. Holbrook, Sung-Hou Kim, 1991, Nature.

Determination of RNA structure and thermodynamics.

J. A. Jaeger, I. Tinoco, J. SantaLucia, 1993, Annual review of biochemistry.

Physical chemistry of nucleic acids.

I. Tinoco, 2002, Annual review of physical chemistry.

The Ribosome Uses Two Active Mechanisms to Unwind mRNA During Translation

Ignacio Tinoco, Harry F. Noller, Carlos Bustamante, 2011, Nature.

RNA reactions one molecule at a time.

Ignacio Tinoco, I. Tinoco, Gang Chen, 2010, Cold Spring Harbor perspectives in biology.

Visualization of oriented hemoglobin S in individual erythrocytes by differential extinction of polarized light.

I. Tinoco, W. Mickols, M. Maestre, 1985, Proceedings of the National Academy of Sciences of the United States of America.

Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of –1 ribosomal frameshifting

Ignacio Tinoco, Carlos Bustamante, I. Tinoco, 2009, Proceedings of the National Academy of Sciences.

Thermodynamics and Kinetics of RNA Unfolding and Refolding

I. Tinoco, Pan T. X. Li, 2009 .

Circular intensity differential scattering of light by helical structures. I. Theory

I. Tinoco, C. Bustamante, M. Maestre, 1980 .

From sequence to structure to function.

Ignacio Tinoco, I. Tinoco, P. Hagerman, 1996, Current opinion in structural biology.

Mutagen–oligonucleotide complexes with a bulged base as models for frameshift mutation

I. Tinoco, Cheryn Lee, 1978, Nature.

A thermodynamic study of unusually stable RNA and DNA hairpins.

I. Tinoco, I Tinoco, V P Antao, 1991, Nucleic acids research.

EF-G catalyzed translocation dynamics in the presence of ribosomal frameshifting stimulatory signals

I. Tinoco, Hee-Kyung Kim, 2016, Nucleic acids research.

Optical Rotation of Oriented Helices. IV. A Free Electron on a Helix

I. Tinoco, R. Woody, 1964 .

Optical properties of sixteen dinucleoside phosphates.

I. Tinoco, M. Warshaw, 1966, Journal of molecular biology.

Optical rotatory dispersion of viruses.

I. Tinoco, M. Maestre, 1967, Journal of molecular biology.

Interactions of 4-nitroquinoline 1-oxide with deoxyribodinucleotides.

I. Tinoco, S. Winkle, 1979, Biochemistry.

Nucleic Acid Structures, Energetics, and Dynamics

I. Tinoco, 1996 .

NMR Assignment of a 2′‐Hydroxyl Proton from the UUCG Tetraloop Through Long‐Range Correlations with 13C

I. Tinoco, J. Pelton, S. R. Lynch, 1996 .

Kinetics for exchange of the imino protons of the d(C-G-C-G-A-A-T-T-C-G-C-G) double helix in complexes with the antibiotics netropsin and/or actinomycin.

I. Tinoco, D. Patel, A. Pardi, 1983, Biochemistry.

Kinetics for exchange of imino protons in deoxyribonucleic acid, ribonucleic acid, and hybrid oligonucleotide helices.

I. Tinoco, A. Pardi, 1982, Biochemistry.

Comparative study of ribonucleotides, deoxyribonucleotides, and hybrid oligonucleotide helixes by nuclear magnetic resonance

I. Tinoco, A. Pardi, F. H. Martin, 1981 .

Laser‐perturbed nuclear magnetic resonance spectroscopy and the conservation of parity

Robert A. Harris, I. Tinoco, R. Harris, 1994 .

Binding of ethidium ion to left-handed Z-RNA induces a cooperative transition to right-handed RNA at the intercalation site.

C. C. Hardin, I. Tinoco, G. Walker, 1988, Biochemistry.

Stabilization of Z-RNA by chemical bromination and its recognition by anti-Z-DNA antibodies.

C. C. Hardin, M. Trulson, I. Tinoco, 1987, Biochemistry.

Following translation by single ribosomes one codon at a time

Ignacio Tinoco, Harry F. Noller, Carlos Bustamante, 2008, Nature.

Kinetics for exchange of imino protons in the d(C-G-C-G-A-A-T-T-C-G-C-G) double helix and in two similar helices that contain a G . T base pair, d(C-G-T-G-A-A-T-T-C-G-C-G), and an extra adenine, d(C-G-C-A-G-A-A-T-T-C-G-C-G).

I. Tinoco, D. Patel, A. Pardi, 1982, Biochemistry.

Self-assembly of porphyrins on nucleic acid templates.

I. Tinoco, M. Maestre, R. Pasternack, 1988, Biochemical and biophysical research communications.

Absorption, scattering, and imaging of biomolecular structures with polarized light.

I. Tinoco, C. Bustamante, W. Mickols, 1987, Annual review of biophysics and biophysical chemistry.

The polymerization of enzymically active α-chymotrypsin☆

I. Tinoco, 1957 .

Thermodynamic studies of base pairing involving 2,6-diaminopurine.

I. Tinoco, C. Cheong, A. Chollet, 1988, Nucleic acids research.

The solution structure of a d[C(TTCG)G] DNA hairpin and comparison to the unusually stable RNA analogue.

I. Tinoco, J. James, 1993, Nucleic acids research.

The circular dichroism of synthetic ribonucleic acids and the influence of uracil on conformation

M. Chamberlin, I. Tinoco, D. Gray, 1972, Biopolymers.

Circular intensity differential scattering of light by helical structures. III. A general polarizability tensor and anomalous scattering

I. Tinoco, C. Bustamante, M. Maestre, 1981 .

Erratum: Optical and Other Electronic Properties of Polymers

I. Tinoco, 1961 .

The kinetics of binding of U-U-C-A to a dodecanucleotide anticodon fragment from yeast tRNA-Phe.

D. Turner, I. Tinoco, K. Yoon, 1976, Nucleic acids research.

The Exciton Contribution to the Optical Rotation of Polymers

I. Tinoco, 1963 .

Circular differential scattering and circular differential absorption of DNA-protein condensates and of dyes bound to DNA-protein condensates.

I. Tinoco, W. Mickols, M. Maestre, 1986, Biochemistry.

Circular dichroism in samples which scatter light

I. Tinoco, C. Bustamante, M. Maestre, 1983 .

Chiroptical Methods and Their Applications to Biomolecular Systems

I. Tinoco, M. Maestre, C. Bustamente, 1982 .

Circular Dichroism of Polymers: Theory and Practice

I. Tinoco, 1979 .

Circular Dichroism and Fluorescence Detected Circular Dichroism of Macromolecules

I. Tinoco, 1979 .

Fluorescence detected circular dichroism and circular polarization of luminescence in rigid media: Direction dependent optical activity obtained by photoselection

I. Tinoco, I. Z. Steinberg, B. Ehrenberg, 1977 .

The α-chymotrypsin catalyzed hydrolysis of ethyl lactate

I. Tinoco, 1958 .

Circular Intensity Differential Scattering Measurements of Planar and Focal Conic Orientations of Cholesteric Liquid Crystals

I. Tinoco, C. Bustamante, D. Keller, 1985 .

The Circular Intensity Differential Scattering (CIDS) of Cholesteric and Blue Mesophases

I. Tinoco, C. Bustamante, D. Keller, 1984 .

The conversion of fibrinogen to fibrin. XII. Influence of pH, ionic strength and hexamethylene glycol concentration on the polymerization of fibrinogen.

I. Tinoco, J. Ferry, S. Shulman, 1953, Archives of biochemistry and biophysics.

Electronic spectra of nucleic acid bases. I. Interpretation of the in-plane spectra with the aid of all valence electron MO-CI calculations.

I. Tinoco, W. Hug, 1973, Journal of the American Chemical Society.

Minor nucleosides in RNA: Optical studies of dinucleoside phosphates containing inosine

I. Tinoco, C. Formoso, 1971, Biopolymers.

Circular intensity differential scattering of light by helical structures. II. Applications

I. Tinoco, C. Bustamante, M. Maestre, 1980 .

The Dynamic Electrical Birefringence of Rigid Macromolecules

I. Tinoco, 1955 .

Circular dichroism study of nine species of transfer ribonucleic acid.

I. Tinoco, O. Uhlenbeck, A. Blum, 1972, Biochemistry.

Circular dichroism of polypeptide solutions in the vacuum ultraviolet.

W. C. Johnson, I. Tinoco, W. Johnson, 1972, Journal of the American Chemical Society.

Temperature‐dependent optical properties of a torsional oscillator model for dinucleoside phosphates

I. Tinoco, I. Tinoco, D. Glaubiger, 1968, Biopolymers.

10 The Interactions That Shape RNA Structure

D. Turner, I. Tinoco, M. Burkard, 1999 .

Correlations in the Ultraviolet Spectra of the Purine and Pyrimidine Bases1

I. Tinoco, L. B. Clark, 1965 .

Electronic spectra of nucleic acid bases. II. Out-of-plane transitions and the structure of the nonbonding orbitals

I. Tinoco, W. Hug, 1974 .

Circular dichroism of polynucleotides: Dimers as a function of conformation

W. C. Johnson, I. Tinoco, M. Itzkowitz, 1972, Biopolymers.

A general method for determination of nucleotide sequences in nucleic acids

I. Tinoco, S. Mandeles, 1963 .

Interactions of 4-nitroquinoline 1-oxide with four deoxyribonucleotides.

I. Tinoco, S. Winkle, 1977, Biochemistry.

Circular differential scattering can be an important part of the circular dichroism of macromolecules.

I. Tinoco, C. Bustamante, M. Maestre, 1983, Proceedings of the National Academy of Sciences of the United States of America.

Hypochromism in Polynucleotides1

I. Tinoco, 1960 .

Optically active hydrocarbon polymers with aromatic side chains. VI. Chiroptical properties of helical copolymers with aromatic side chains

I. Tinoco, F. Ciardelli, W. Hug, 1974 .

Absorption and rotation of light by helical oligomers: The nearest neighbor approximation

I. Tinoco, D. F. Bradley, R. Woody, 1963 .

Absorption and Rotation of Light by Helical Polymers: The Effect of Chain Length

I. Tinoco, D. F. Bradley, R. Woody, 1963 .

Theoretical Aspects of Optical Activity Part Two: Polymers

I. Tinoco, 2007 .

Optical Rotation of Oriented Helices. III. Calculation of the Rotatory Dispersion and Circular Dichroism of the Alpha‐ and 310‐Helix

I. Tinoco, R. Woody, 1967 .

Temperature‐dependent properties of dinucleoside phosphates

I. Tinoco, R. Davis, R. Davis, 1968, Biopolymers.

A novel 5 displacement spin-labeling technique for electron paramagnetic resonance spectroscopy of RNA.

I. Tinoco, Y. Shin, J. Macosko, 1999, RNA.

Role of hypermodified bases in transfer RNA. Solution properties of dinucleoside monophosphates.

I. Tinoco, M. T. Watts, 1978, Biochemistry.

Absorption and optical rotatory dispersion of six dinucleoside phosphates.

I. Tinoco, M. Warshaw, 1965, Journal of molecular biology.

Conformational analysis of d(C3G3), a B-family duplex in solution.

C. C. Hardin, I. Tinoco, S. Wolk, 1989, Biochemistry.

Conformation of polyriboadenylic acid: pH and temperature dependence

I. Tinoco, D. N. Holcomb, I. Tinoco, 1965 .

The stability of helical polynucleotides: base contributions.

I. Tinoco, H. Devoe, H DEVOE, 1962, Journal of molecular biology.

Differential polarization microscopy of changes in structure in spermatocyte nuclei

I. Tinoco, M. Maestre, W. Mickols, 1987, Nature.

Studies of the conformation of modified dinucleoside phosphates containing 1,N6-ethenoadenosine and 2'-O-methylcytidine by 360-MHz 1H nuclear magnetic resonance spectroscopy. Investigation of the solution conformations of dinucleoside phosphates.

I. Tinoco, C. Lee, 1977, Biochemistry.

Classical theory of circular dichroism in infinite helical polymers

I. Tinoco, A. Levin, 1977 .

Polynucleotide circular dichroism calculations: Use of an all‐order classical coupled oscillator polarizability theory

I. Tinoco, W. Hug, C. Cech, 1976, Biopolymers.

Differential scattering of circularly polarized light by the helical sperm head from the octopus Eledone cirrhosa

Ignacio Tinoco, Carlos Bustamante, Marcos F. Maestre, 1982, Nature.

The hypochromism of helical polynucleotides.

I. Tinoco, H. Devoe, 1962, Journal of molecular biology.

Circular Dichroism and Rotatory Dispersion Curves for Helices

I. Tinoco, 1964 .

Quantum mechanical treatment of circular intensity differential scattering: The elastic process

I. Tinoco, C. Bustamante, D. Keller, 1984 .

Optical and Other Electronic Properties of Polymers

I. Tinoco, 1960 .

Vacuum ultraviolet circular dichroism as an indicator of helical handedness in nucleic acids.

I. Tinoco, A. L. Williams, C. Cheong, 1986, Nucleic acids research.

Evidence for Z-form RNA by vacuum UV circular dichroism

P. Cruz, Ignacio Tinoco, K. Hall, 1985, Nucleic Acids Res..

Vapor Spectra and Heats of Vaporization of Some Purine and Pyrimidine Bases1

Ignacio Tinoco, I. Tinoco, Leigh B. Clark, 1965 .

Solution structure of a metal-binding site in the major groove of RNA complexed with cobalt (III) hexammine.

I. Tinoco, J. Kieft, J S Kieft, 1997, Structure.

Raman spectroscopic study of left-handed Z-RNA.

M. Trulson, I. Tinoco, R. Mathies, 1987, Biochemistry.

The tetraribonucleotide rCpGpCpG forms a left-handed Z-RNA double-helix.

T. Neilson, I. Tinoco, K. Hall, 1986, Nucleic Acids Research.

‘Z-RNA’—a left-handed RNA double helix

I. Tinoco, K. Hall, T. Jovin, 1984, Nature.

Chemically induced dynamic nuclear polarization studies of guanosine in nucleotides, dinucleotides, and oligonucleotides

I. Tinoco, A. Pardi, S. Boxer, 1984 .

DNA and RNA oligomer thermodynamics: The effect of mismatched bases on double‐helix stability

I. Tinoco, F. H. Martin, J. W. Nelson, 1981, Biopolymers.

Solution conformation of an RNA hairpin loop.

I. Tinoco, J. Puglisi, J. Wyatt, 1990, Biochemistry.

Z‐RNA: The solution NMR structure of r(CGCGCG)

I. Tinoco, R. Adamiak, P. Davis, 1990, Biopolymers.

Effects of nucleotide bromination on the stabilities of Z‐RNA and Z‐DNA: A molecular mechanics/thermodynamic perturbation study

C. C. Hardin, P. Kollman, I. Tinoco, 1989, Biopolymers.

A two-state kinetic model for the unfolding of single molecules by mechanical force

F. Ritort, I. Tinoco, C. Bustamante, 2002, Proceedings of the National Academy of Sciences of the United States of America.

OPTICAL ROTATORY DISPERSION OF BACTERIOPHAGES.

I. Tinoco, M. Maestre, 1965, Journal of molecular biology.

Full molecular trajectories of RNA polymerase at single base-pair resolution

I. Tinoco, C. Bustamante, Antony Lee, 2018, Proceedings of the National Academy of Sciences.

Probing the mechanisms of translation with force.

I. Tinoco, Christian M. Kaiser, 2014, Chemical reviews.

Simulation and analysis of single-ribosome translation

I. Tinoco, J. Wen, 2009, Physical biology.

Determination of thermodynamics and kinetics of RNA reactions by force

Ignacio Tinoco, Carlos Bustamante, I. Tinoco, 2006, Quarterly Reviews of Biophysics.

Comparison between DNA melting thermodynamics and DNA polymerase fidelity.

I. Tinoco, M. Boosalis, C. Cheong, 1988, Proceedings of the National Academy of Sciences of the United States of America.

The kinetics of codon-anticodon interaction in yeast phenylalanine transfer RNA.

D. Turner, I. Tinoco, K. Yoon, 1975, Journal of molecular biology.

The binding of complementary oligoribonucleotides to yeast initiator Transfer RNA.

S. Freier, I. Tinoco, 1975, Biochemistry.

Imaging differential polarization microscope with electronic readout

I. Tinoco, C. Bustamante, M. Maestre, 1985 .

The Optical Activity of Oriented Copper Helices. I. Experimental

Ignacio Tinoco, M. P. Freeman, I. Tinoco, 1957 .

Two‐photon circular dichroism

Ignacio Tinoco, I. Tinoco, 1975 .

Fluorescence detected circular dichroism. Theory

Ignacio Tinoco, Douglas H. Turner, D. Turner, 1976 .

Fluorescence detected circular dichroism study of the anticodon loop of yeast tRNAPhe.

D. Turner, I. Tinoco, M. Maestre, 1975, Biochemistry.

Ultra-violet Absorption Spectrum of Thymine in Ice

Stephen L. Davis, I. Tinoco, 1966, Nature.

THE OPTICAL ROTATORY DISPERSION OF ADENYLYL (3'-5') ADENOSINE AND ITS SIGNIFICANCE FOR POLYNUCLEOTIDE ROTATIONS.

I. Tinoco, C. Bush, M. Warshaw, 1965, Biochemical and biophysical research communications.

Solution structure of loop A from the hairpin ribozyme from tobacco ringspot virus satellite.

I. Tinoco, Z. Cai, I Tinoco, 1996, Biochemistry.

Unusual mechanical stability of a minimal RNA kissing complex

Ignacio Tinoco, Carlos Bustamante, I. Tinoco, 2006, Proceedings of the National Academy of Sciences.

Carbon-Proton Scalar Couplings in RNA: 3D Heteronuclear and 2D Isotope-Edited NMR of a 13C-Labeled Extra-stable Hairpin

G. Varani, I. Tinoco, J. Hines, 1994 .

The stereospecific assignment of H5' and H5'' in RNA using the sign of two-bond carbon-proton scalar couplings

G. Varani, I. Tinoco, J. Hines, 1993 .

Dynamic Electrical Birefringence Studies of Poly-γ-benzyl-L-glutamate1

I. Tinoco, 1957 .

Calculation of the rotational strengths of mononucleosides

I. Tinoco, M. Itzkowitz, N. Teng, 1971 .

DNA-RNA hybrid duplexes containing oligo(dA:rU) sequences are exceptionally unstable and may facilitate termination of transcription.

I. Tinoco, I Tinoco, F H Martin, 1980, Nucleic acids research.

Synthesis and NMR of RNA with selective isotopic enrichment in the bases.

I. Tinoco, J. SantaLucia, L. X. Shen, 1995, Nucleic acids research.

The optical properties of polynucleotides

I. Tinoco, 1968 .

Calculation of the optical rotatory dispersion of dinucleoside phosphates.

I. Tinoco, C. Bush, 1967, Journal of molecular biology.

Force unfolding kinetics of RNA using optical tweezers. II. Modeling experiments.

F. Ritort, I. Tinoco, S. Smith, 2007, Biophysical journal.

Force unfolding kinetics of RNA using optical tweezers. I. Effects of experimental variables on measured results.

Ignacio Tinoco, Carlos Bustamante, Jin-Der Wen, 2007, Biophysical journal.

The effect of force on thermodynamics and kinetics of single molecule reactions.

Ignacio Tinoco, Carlos Bustamante, I. Tinoco, 2002, Biophysical chemistry.

Base pairing involving deoxyinosine: implications for probe design.

I. Tinoco, M. M. Castro, F. Aboul-ela, 1985, Nucleic acids research.

Calorimetric and spectroscopic investigation of the helix-to-coil transition of a ribo-oligonucleotide: rA7U7.

I. Tinoco, K. Breslauer, J. Sturtevant, 1975, Journal of molecular biology.

THE EFFECT OF CHAIN LENGTH UPON HYPOCHROMISM IN NUCLEIC ACIDS AND POLYNUCLEOTIDES

I. Tinoco, A. Rich, 1960 .

Biophysical Analysis of Nucleic Acids

I. Tinoco, 2000, Current protocols in nucleic acid chemistry.

Solution structure and thermodynamics of a divalent metal ion binding site in an RNA pseudoknot.

I. Tinoco, R. Gonzalez, 1999, Journal of molecular biology.

Solution Structure and Thermodynamics of a Divalent Metal Ion Binding Site in an RNA Pseudoknot

I. Tinoco, R. Gonzalez, Ignacio Tinoco, 1999 .

The structure of an RNA "kissing" hairpin complex of the HIV TAR hairpin loop and its complement.

I. Tinoco, I Tinoco, K Y Chang, 1997, Journal of molecular biology.

Application of optical rotatory dispersion and circular dichrosim to the study of biopolymers.

I. Tinoco, 2006, Methods of biochemical analysis.

The ultraviolet circular dichroism of some natural DNAs and an analysis of the spectra for sequence information

F. S. Allen, I. Tinoco, D. Gray, 1972, Biopolymers.

Poly(rA) binds poly(rG).poly(rC) to form a triple helix.

I. Tinoco, M. Chastain, 1992, Nucleic acids research.

A new approach to the study of sequence‐dependent properties of polynucleotides

Ignacio Tinoco, Donald M. Gray, I. Tinoco, 1970 .

Base-Base Interactions in Nucleic Acids

Robert C. Davis, I. Tinoco, S. Jaskunas, 1968 .

Interacalation of ethidium ion into DNA and RNA oligonucleotides

I. Tinoco, J. Nelson, 1984, Biopolymers.

Solution conformation of a five-nucleotide RNA bulge loop from a group I intron.

I. Tinoco, K. Luebke, I Tinoco, 1997, Biochemistry.

Carbon assignments and heteronuclear coupling constants for an RNA oligonucleotide from natural abundance carbon-13-proton correlated experiments

G. Varani, I. Tinoco, 1991 .

Structure of an unusually stable RNA hairpin.

G. Varani, I. Tinoco, C. Cheong, 1991, Biochemistry.

Conformation studies of 13 trinucleoside diphosphates by 360 MHz PMR spectroscopy. A bulged base conformation. I. Base protons and H1' protons.

I. Tinoco, C. Lee, 1980, Biophysical chemistry.

ELECTRICAL BIREFRINGENCE AT HIGH FIELDS1

I. Tinoco, D. N. Holcomb, 1963 .

CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes.

G. Stormo, M. Gayle, I. Tinoco, 1988, Proceedings of the National Academy of Sciences of the United States of America.

Structure, dynamics, and thermodynamics of mismatched DNA oligonucleotide duplexes d(CCCAGGG)2 and d(CCCTGGG)2.

F. Arnold, I. Tinoco, S. Wolk, 1987, Biochemistry.

Sequential folding of a messenger RNA molecule.

R Nussinov, R. Nussinov, I. Tinoco, 1981, Journal of molecular biology.

Differential scattering (CIDS) of circularly polarized light by dense particles

I. Tinoco, C. Bustamante, D. Keller, 1984 .

A retroviral RNA kissing complex containing only two G.C base pairs.

I. Tinoco, I Tinoco, C H Kim, 2000, Proceedings of the National Academy of Sciences of the United States of America.

Solution structure of an unusually stable RNA hairpin, 5GGAC(UUCG)GUCC

G. Varani, I. Tinoco, C. Cheong, 1990, Nature.

Single–Base Pair Unwinding and Asynchronous RNA Release by the Hepatitis C Virus NS3 Helicase

I. Tinoco, C. Bustamante, J. Moffitt, 2011, Science.

How RNA unfolds and refolds.

Ignacio Tinoco, I. Tinoco, Pan T. X. Li, 2008, Annual review of biochemistry.

The Reversing Pulse Technique in Electric Birefringence

I. Tinoco, K. Yamaoka, 1959 .

Some aspects of the polymerization of fibrinogen

I. Tinoco, J. Ferry, S. Katz, 1954 .

Charge distribution of fibrinogen as determined by transient electric birefringence studies.

I. Tinoco, A. Haschemeyer, 1962, Biochemistry.

The Conversion of Fibrinogen to Fibrin. XVI. Electrical Birefringence of Fibrinogen and Activated Fibrinogen1

I. Tinoco, 1955 .

Ribosomal protein S1 unwinds double-stranded RNA in multiple steps

Ignacio Tinoco, Harry F Noller, Carlos Bustamante, 2012, Proceedings of the National Academy of Sciences.

Base-base mismatches. Thermodynamics of double helix formation for dCA3XA3G + dCT3YT3G (X, Y = A, C, G, T)

Ignacio Tinoco, F. Aboul-ela, D. Koh, 1985, Nucleic Acids Res..

NS3 helicase actively separates RNA strands and senses sequence barriers ahead of the opening fork

I. Tinoco, C. Bustamante, S. Dumont, 2007, Proceedings of the National Academy of Sciences.

A dynamic programming algorithm for finding alternative RNA secondary structures

Ignacio Tinoco, A. L. Williams, I. Tinoco, 1986, Nucleic Acids Res..

The conformation of loop E of eukaryotic 5S ribosomal RNA.

G. Varani, I. Tinoco, B. Wimberly, 1993, Biochemistry.

Mechanisms of cellular proteostasis: insights from single molecule approaches (226.3)

Carlos J Bustamante, I. Tinoco, C. Bustamante, 2014, Annual review of biophysics.

A mutant RNA pseudoknot that promotes ribosomal frameshifting in mouse mammary tumor virus.

I. Tinoco, I Tinoco, H Kang, 1997, Nucleic acids research.

A characteristic bent conformation of RNA pseudoknots promotes -1 frameshifting during translation of retroviral RNA.

H. Varmus, I. Tinoco, M. Chamorro, 1996, Journal of molecular biology.

Conformation of a non-frameshifting RNA pseudoknot from mouse mammary tumor virus.

I. Tinoco, I Tinoco, J. Hines, 1996, Journal of molecular biology.

The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus.

I. Tinoco, L. X. Shen, I Tinoco, 1995, Journal of molecular biology.

Structural and functional studies of retroviral RNA pseudoknots involved in ribosomal frameshifting: nucleotides at the junction of the two stems are important for efficient ribosomal frameshifting.

H. Varmus, I. Tinoco, M. Chamorro, 1995, The EMBO journal.

Force as a useful variable in reactions: unfolding RNA.

Ignacio Tinoco, I. Tinoco, 2004, Annual review of biophysics and biomolecular structure.

Structure of a small RNA hairpin.

I. Tinoco, P. Davis, W. Thurmes, 1993, Nucleic acids research.

A frameshifting stimulatory stem loop destabilizes the hybrid state and impedes ribosomal translocation

Fei Liu, I. Tinoco, C. Bustamante, 2014, Proceedings of the National Academy of Sciences.

Ribosome Excursions during mRNA Translocation Mediate Broad Branching of Frameshift Pathways

I. Tinoco, C. Bustamante, J. Wen, 2015, Cell.

The Ribosome Modulates Nascent Protein Folding

I. Tinoco, C. Bustamante, J. Chodera, 2011, Science.

Application of matrix rank analysis to the optical rotatory dispersion of TMV RNA

I. Tinoco, S. Jaskunas, D. McMullen, 1967, Biopolymers.

Characterization of anti-Z-RNA polyclonal antibodies: epitope properties and recognition of Z-DNA.

C. C. Hardin, I. Tinoco, S. Wolk, 1988, Biochemistry.

Characterization of a "kissing" hairpin complex derived from the human immunodeficiency virus genome.

I. Tinoco, I Tinoco, K Y Chang, 1994, Proceedings of the National Academy of Sciences of the United States of America.

Structure and Function in Nucleic Acids: Mutagenesis

F. Arnold, I. Tinoco, S. Wolk, 1987 .

Mechanical unfolding of two DIS RNA kissing complexes from HIV-1.

Ignacio Tinoco, I. Tinoco, Pan T. X. Li, 2009, Journal of molecular biology.

Characterization of the Mechanical Unfolding of RNA Pseudoknots

Ignacio Tinoco, Carlos Bustamante, I. Tinoco, 2007, Journal of Molecular Biology.

Identifying Kinetic Barriers to Mechanical Unfolding of the T. thermophila Ribozyme

Ignacio Tinoco, Carlos Bustamante, Jan Liphardt, 2003, Science.

Modelling RNA folding under mechanical tension

Ignacio Tinoco, I. Tinoco, Jeffrey R Vieregg, 2006, Molecular physics.

Probing the mechanical folding kinetics of TAR RNA by hopping, force-jump, and force-ramp methods.

Ignacio Tinoco, Carlos Bustamante, I. Tinoco, 2006, Biophysical journal.

Temperature control methods in a laser tweezers system.

Ignacio Tinoco, J Ricardo Arias-Gonzalez, Carlos Bustamante, 2005, Biophysical journal.

Fun and games in Berkeley: the early years (1956-2013).

I. Tinoco, 2014, Annual review of biophysics.

Circular Differential Microscopy

I. Tinoco, C. Bustamante, D. Keller, 1985 .

Circular intensity differential scattering of light. IV. Randomly oriented species

I. Tinoco, C. Bustamante, M. Maestre, 1982 .

The optical activity of nucleic acids and their aggregates.

I. Tinoco, C. Bustamante, M. Maestre, 1980, Annual review of biophysics and bioengineering.

Nucleic acids from sequence to structure to function

Ignacio Tinoco, I. Tinoco, PaulJ Hagerman, 1996 .

Z-RNA: A Left-Handed Double Helix

C. C. Hardin, T. Neilson, I. Tinoco, 1986 .

APPENDIX 2: Schematic Diagrams of Secondary and Tertiary Structure Elements

Ignacio Tinoco, Douglas H. Turner, Mark E. Burkard, 1999 .

Fluorescence‐detected circular dichroism of dinucleoside phosphates. A study of solution conformations and the two‐state model

I. Tinoco, C. Reich, 1980 .

The effect of force on thermodynamics and kinetics: unfolding single RNA molecules.

I. Tinoco, D. Collin, P. T. X. Li, 2004, Biochemical Society transactions.

Unpaired cytosine in the deoxyoligonucleotide duplex dCA3CA3G.cntdot.dCT6G is outside of the helix

Ignacio Tinoco, I. Tinoco, Kathleen M. Morden, 1983 .

Comparison of the B- and Z-form hairpin loop structures formed by d(CG)5T4(CG)5.

C. C. Hardin, I. Tinoco, J. Van De Sande, 1988, Biochemistry.

THE CIRCULAR DICHROISM OF LARGE HELICES. A FREE PARTICLE ON A HELIX

I. Tinoco, D. S. Moore, 1980 .

Circular dichroism of large molecules

I. Tinoco, 1979 .

Calculated optical properties of 64 trinucleoside diphosphates

C. Cantor, I. Tinoco, I. Tinoco, 1967, Biopolymers.

Optical rotation and polypeptide structure

I. Tinoco, R. Woody, K. Yamaoka, 1961 .

Direct measurement of the mechanical work during translocation by the ribosome

H. Noller, I. Tinoco, C. Bustamante, 2014, eLife.

The conversion of fibrinogen to fibrin. XV. Sedimentation studies of the polymerization of fibrinogen at high pH.

I. Tinoco, J. Ferry, 1954, Archives of biochemistry and biophysics.

The conversion of fibrinogen to fibrin. XIV. The effect of calcium on the formation and dissociation of intermediate polymers.

I. Tinoco, J. Ferry, S. Katz, 1953, Archives of Biochemistry and Biophysics.

Correlations between deoxyribonucleic acid structural parameters and calculated circular dichroism spectra.

V. Zhurkin, I. Tinoco, V. Ivanov, 1981, Biochemistry.

RNA motifs that determine specificity between a viral replicase and its promoter

I. Tinoco, C. Kao, Chul-Hyun Kim, 2000, Nature Structural Biology.

Crystallization and preliminary crystallographic investigation of a DNA-RNA hybrid.

I. Tinoco, S. Holbrook, S. Kim, 1981, Journal of Molecular Biology.

Identification and characterization of metal ion binding sites in RNA.

I. Tinoco, R. Gonzalez, 2001, Methods in enzymology.

End-to-end transcription of an Alu family repeat. A new type of polymerase-III-dependent terminator and its evolutionary implication.

I. Tinoco, B. Weir, C. Perez-stable, 1985, Journal of molecular biology.

Ethidium ion binds more strongly to a DNA double helix with a bulged cytosine than to a regular double helix.

I. Tinoco, J. W. Nelson, 1985, Biochemistry.

Formation of a GNRA tetraloop in P5abc can disrupt an interdomain interaction in the Tetrahymena group I ribozyme

I. Tinoco, I Tinoco, M Zheng, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA.

I. Tinoco, M. Schmitz, 2000, RNA.

Solution structure of Cobalt(III)hexammine complexed to the GAAA tetraloop, and metal-ion binding to G.A mismatches.

I. Tinoco, S. Rüdisser, I Tinoco, 2000, Journal of molecular biology.

Nucleoside triples from the group I intron.

I. Tinoco, M. Chastain, 1993, Biochemistry.

An NMR study of the HIV-1 TAR element hairpin.

J. A. Jaeger, I. Tinoco, 1993, Biochemistry.

Conformation and dynamics of an RNA internal loop.

G. Varani, I. Tinoco, B. Wimberly, 1989, Biochemistry.

Mapping of a protein-RNA kissing hairpin interface: Rom and Tar-Tar*.

I. Tinoco, J. Pelton, L. Comolli, 1998, Nucleic acids research.

Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops.

I. Tinoco, I Tinoco, V P Antao, 1992, Nucleic acids research.

Mechanical force releases nascent chain–mediated ribosome arrest in vitro and in vivo

I. Tinoco, C. Bustamante, Christian M. Kaiser, 2015, Science.

The TFIIIA recognition fragment d(GGATGGGAG).d(CTCCCATCC) is B-form in solution.

G. Varani, I. Tinoco, G. Walker, 1988, Nucleic acids research.

APPENDIX 1: Structures of Base Pairs Involving at Least Two Hydrogen Bonds

I. Tinoco, 1993 .

Use of ultra stable UNCG tetraloop hairpins to fold RNA structures: thermodynamic and spectroscopic applications.

I. Tinoco, M. Molinaro, 1995, Nucleic acids research.

Dna Dynamics in Aqueous Solution: Opening the Double Helix

Ignacio Tinoco, Andrew Pohorille, Wilson S. Ross, 1990, Int. J. High Perform. Comput. Appl..

Measurement of the effect of monovalent cations on RNA hairpin stability.

Ignacio Tinoco, Carlos Bustamante, I. Tinoco, 2007, Journal of the American Chemical Society.

Structure and thermodynamics of metal binding in the P5 helix of a group I intron ribozyme.

I. Tinoco, I Tinoco, G Colmenarejo, 1999, Journal of molecular biology.

The effect of speed of deoxygenation on the percentage of aligned hemoglobin in sickle cells. Application of differential polarization microscopy.

I. Tinoco, W. Mickols, J. D. Corbett, 1988, The Journal of biological chemistry.

Co-temporal Force and Fluorescence Measurements Reveal a Ribosomal Gear Shift Mechanism of Translation Regulation by Structured mRNAs.

Varsha P. Desai, H. Noller, I. Tinoco, 2019, Molecular cell.

Circular dichroism calculations for double‐stranded polynucleotides of repeating sequence

I. Tinoco, C. Cech, 1977, Biopolymers.

Imaging of optically active biological structures by use of circularly polarized light.

I. Tinoco, C. Bustamante, D. Keller, 1985, Proceedings of the National Academy of Sciences of the United States of America.

Temperature‐jump kinetics of the dC‐G‐T‐G‐A‐A‐T‐T‐C‐G‐C‐G double helix containing a G·T base pair and the dC‐G‐C‐A‐G‐A‐A‐T‐T‐C‐G‐C‐G double helix containing an extra adenine

I. Tinoco, Y. Gloria Chu, 1983, Biopolymers.

Conformation of an RNA molecule that models the P4/P6 junction for group I introns.

I. Tinoco, J. Nowakowski, 1996, Biochemistry.

Scattering of circularly polarized radiation

I. Tinoco, D. Keller, 1983 .

Laser-enhanced NMR spectroscopy: theoretical considerations.

I. Tinoco, R. A. Harris, 1993, Science.

Structural effects on the circular dichroism of ethidium ion-nucleic acid complexes.

I. Tinoco, A. Pardi, K. Dahl, 1982, Biochemistry.

18 RNA Structural Elements and RNA Function

I. Tinoco, J. Wyatt, 1993 .

The stability of RNA hairpin loops containing A–U–G: An–U–G–Um

I. Tinoco, E. Wickstrom, 1974, Biopolymers.

The Optical Rotation of Oriented Helices. I. Electrical Orientation of Poly-γ-benzyl-L-glutamate in Ethylene Dichloride

I. Tinoco, 1959 .

Sequence effects on RNA bulge-induced helix bending and a conserved five-nucleotide bulge from the group I introns.

I. Tinoco, K. Luebke, 1996, Biochemistry.

Watching single RNA molecules respond to local application of mechanical force

I. Tinoco, J. Liphardt, C. Bustamante, 2002, Proceedings of the Second Joint 24th Annual Conference and the Annual Fall Meeting of the Biomedical Engineering Society] [Engineering in Medicine and Biology.

Optical Rotation of Oriented Helices. II. Calculation of the Rotatory Dispersion of the Alpha Helix

I. Tinoco, R. Woody, 1960 .

THE CHANGE OF OPTICAL ACTIVITY OF POLY-γ-BENZYL-L-GLUTAMATE IN AN ELECTRIC FIELD

I. Tinoco, 1957 .

Optical Activity of a Solution of Macromolecules in a Hydrodynamic Field

I. Tinoco, 1957 .

Fluorescence detected circular dichroism

D. Turner, I. Tinoco, M. Maestre, 1974 .

DIFFERENTIAL ABSORPTION AND DIFFERENTIAL SCATTERING OF CIRCULARLY POLARIZED LIGHT: Applications to Biological Macromolecules

I. Tinoco, Arthur L. Williams, 1984 .

Sequences and efficiencies of proposed mRNA terminators

I. Tinoco, J. E. McMahon, 1978, Nature.

Circular dichroism of double-helical oligoribonucleotides.

I. Tinoco, O. Uhlenbeck, P. Borer, 1973, Journal of molecular biology.

Comparison of the kinetics of ribo-, deoxyribo- and hybrid oligonucleotide double-strand formation by temperature-jump kinetics

I. Tinoco, J. W. Nelson, 1982 .

The structure of the L3 loop from the hepatitis delta virus ribozyme: a syn cytidine.

I. Tinoco, S. R. Lynch, 1998, Nucleic acids research.