S. Hayward

发表

Limits on α‐helix prediction with neural network models

S. Hayward, J. Collins, 1992 .

Collective protein dynamics in relation to function.

H. Berendsen, S. Hayward, 2000, Current opinion in structural biology.

Domain motions in bacteriophage T4 lysozyme: A comparison between molecular dynamics and crystallographic data

H. Berendsen, B. L. de Groot, S. Hayward, 1998, Proteins.

Structural principles governing domain motions in proteins

S. Hayward, S Hayward, 1999, Proteins.

Systematic analysis of domain motions in proteins from conformational change: New results on citrate synthase and T4 lysozyme

H. Berendsen, S. Hayward, 1998, Proteins.

Harmonicity and anharmonicity in protein dynamics: A normal mode analysis and principal component analysis

N. Go, S. Hayward, A. Kitao, 1995, Proteins.

Model‐free methods of analyzing domain motions in proteins from simulation: A comparison of normal mode analysis and molecular dynamics simulation of lysozyme

H. Berendsen, S. Hayward, A. Kitao, 1997, Proteins.

Normal modes and essential dynamics.

Steven Hayward, Bert L de Groot, B. L. de Groot, 2008, Methods in molecular biology.

A method for the analysis of domain movements in large biomolecular complexes

Steven Hayward, Atsushi Matsumoto, Hisashi Ishida, 2009, Proteins.

Monte Carlo Sampling with Linear Inverse Kinematics for Simulation of Protein Flexible Regions.

Steven Hayward, Akio Kitao, S. Hayward, 2015, Journal of chemical theory and computation.

Harmonic and anharmonic aspects in the dynamics of BPTI: A normal mode analysis and principal component analysis

A Kitao, N Go, N. Go, 1994, Protein science : a publication of the Protein Society.

The effect of end constraints on protein loop kinematics.

Steven Hayward, Akio Kitao, S. Hayward, 2010, Biophysical journal.

Collective variable description of native protein dynamics.

N Go, N. Go, S. Hayward, 1995, Annual review of physical chemistry.

Comparison of normal mode analyses on a small globular protein in dihedral angle space and Cartesian coordinate space.

A Kitao, N Go, N. Go, 1994, Biophysical chemistry.

Peptide‐plane flipping in proteins

S. Hayward, S Hayward, 2001, Protein science : a publication of the Protein Society.

Multi-strand β-sheet of Alzheimer Aβ(1–40) folds to β-strip helix: implication for protofilament formation

S. Hayward, A. Kitao, 2018, Journal of biomolecular structure & dynamics.

Improvements in the analysis of domain motions in proteins from conformational change: DynDom version 1.50.

Steven Hayward, S. Hayward, Richard A Lee, 2002, Journal of molecular graphics & modelling.

Identification of specific interactions that drive ligand-induced closure in five enzymes with classic domain movements.

Steven Hayward, S. Hayward, 2004, Journal of molecular biology.

Rings and ribbons in protein structures: Characterization using helical parameters and Ramachandran plots for repeating dipeptides:Rings and Ribbons in Protein Structures

S. Hayward, D. Leader, E. Milner-White, 2014 .

Rings and ribbons in protein structures: Characterization using helical parameters and Ramachandran plots for repeating dipeptides

S. Hayward, D. Leader, E. Milner-White, 2014, Proteins.

Geometrical principles of homomeric β‐barrels and β‐helices: Application to modeling amyloid protofilaments

S. Hayward, E. Milner-White, E. Milner-White, 2017, Proteins.

The DynDom Database of Protein Domain Motions

Moe Razaz, Richard A. Lee, Steven Hayward, 2003, Bioinform..

Effect of solvent on collective motions in globular protein.

N. Go, S. Hayward, F. Hirata, 1993, Journal of molecular biology.

Bending of the calmodulin central helix: A theoretical study

Steven Hayward, H. Berendsen, B. L. de Groot, 1996, Protein science : a publication of the Protein Society.

Methodological improvements for the analysis of domain movements in large biomolecular complexes

Steven Hayward, Ruth Veevers, S. Hayward, 2019, Biophysics and physicobiology.

The role of the half-turn in determining structures of Alzheimer's Aβ, its mutants.

S. Hayward, A. Kitao, 2021, Journal of structural biology.

Path of nascent polypeptide in exit tunnel revealed by molecular dynamics simulation of ribosome.

Steven Hayward, Hisashi Ishida, S. Hayward, 2008, Biophysical journal.

Morphing and docking visualisation of biomolecular structures using Multi-Dimensional Scaling.

Steven Hayward, Ruth Veevers, S. Hayward, 2018, Journal of molecular graphics & modelling.

Studies in protein secondary structure prediction with neural network models

Steven John Hayward, S. Hayward, 1991 .

Energy landscape of a native protein: Jumping‐among‐minima model

A Kitao, N Go, N. Go, 1998, Proteins.

Quantitative method for the assignment of hinge and shear mechanism in protein domain movements

Gavin C. Cawley, Steven Hayward, Daniel Taylor, 2014, Bioinform..

Essential dynamics sampling study of adenylate kinase: Comparison to citrate synthase and implication for the hinge and shear mechanisms of domain motions

Steven Hayward, Guoying Qi, S. Hayward, 2007, Proteins.

Investigating the accessibility of the closed domain conformation of citrate synthase using essential dynamics sampling.

Isabella Daidone, Steven Hayward, Danilo Roccatano, 2004, Journal of molecular biology.

Determination of amino acids that favour the αL region using Ramachandran propensity plots. Implications for α-sheet as the possible amyloid intermediate.

S. Hayward, E. Milner-White, 2021, Journal of structural biology.

The geometry of α‐sheet: Implications for its possible function as amyloid precursor in proteins

S. Hayward, E. Milner-White, E. James Milner‐White, 2008, Proteins.

Characterization of the Immune Microenvironment in Inflammatory Breast Cancer Using Multiplex Immunofluorescence

S. Hayward, D. Rea, A. Shaaban, 2022, Pathobiology.

Tspan6 stimulates the chemoattractive potential of breast cancer cells for B cells in an EV- and LXR-dependent manner.

S. Hayward, V. Speirs, S. V. van Laere, 2023, Cell reports.

Simulation of the β‐ to α‐sheet transition results in a twisted sheet for antiparallel and an α‐nanotube for parallel strands: Implications for amyloid formation

S. Hayward, E. James Milner‐White, 2011, Proteins.

Amyloid Formation May Involve α- to β Sheet Interconversion via Peptide Plane Flipping

S. Hayward, J. Watson, G. Qi, 2006 .

Interactive Flexible-Receptor Molecular Docking in Virtual Reality Using DockIT

S. Hayward, S. Laycock, Georgios Iakovou, 2022, J. Chem. Inf. Model..

Neural Network Applications in the Edinburgh Concurrent Supercomputer Project

Michael G. Norman, D. J. Wallace, Gareth D. Richards, 1989, NATO Neurocomputing.

Haptic-Assisted Interactive Molecular Docking Incorporating Receptor Flexibility

Steven Hayward, Akio Kitao, Stephen Laycock, 2019, J. Chem. Inf. Model..

Normal Mode Analysis of Biological Molecules

Steven Hayward, S. Hayward, 2001 .

Interacting with the biomolecular solvent accessible surface via a haptic feedback device

Matthew B. Stocks, Steven Hayward, Stephen D Laycock, 2009, BMC Structural Biology.

Investigation of the mechanism of domain closure in citrate synthase by molecular dynamics simulation.

S. Hayward, A. Mark, D. Roccatano, 2001, Journal of molecular biology.

The DynDom3D Webserver for the Analysis of Domain Movements in Multimeric Proteins

Steven Hayward, Christopher Girdlestone, S. Hayward, 2016, J. Comput. Biol..

Molecular dynamics simulations of NAD+-induced domain closure in horse liver alcohol dehydrogenase.

S. Hayward, A. Kitao, 2006, Biophysical journal.

DockIT: a tool for interactive molecular docking and molecular complex construction

Stephen D. Laycock, Georgios Iakovou, Steven Hayward, 2020, Bioinform..

Virtual Environment for Studying the Docking Interactions of Rigid Biomolecules with Haptics

Georgios Iakovou, Steven Hayward, Stephen D Laycock, 2017, J. Chem. Inf. Model..

Determination of locked interfaces in biomolecular complexes using Haptimol_RD

Georgios Iakovou, Steven Hayward, Stephen Laycock, 2016, Biophysics and physicobiology.

Adaptive GPU-accelerated force calculation for interactive rigid molecular docking using haptics.

Georgios Iakovou, Steven Hayward, Stephen D Laycock, 2015, Journal of molecular graphics & modelling.

A real-time proximity querying algorithm for haptic-based molecular docking.

Georgios Iakovou, Steven Hayward, Stephen Laycock, 2014, Faraday discussions.

A Retrospective on the Development of Methods for the Analysis of Protein Conformational Ensembles

S. Hayward, 2023, The Protein Journal.

Applying forces to elastic network models of large biomolecules using a haptic feedback device

Stephen D. Laycock, Matthew B. Stocks, Steven Hayward, 2011, J. Comput. Aided Mol. Des..

Database of ligand-induced domain movements in enzymes

Steven Hayward, Guoying Qi, S. Hayward, 2009, BMC Structural Biology.

Structural principles governing domain motions in proteins

S. Hayward, 1999, Proteins.

Investigation of sequence features of hinge-bending regions in proteins with domain movements using kernel logistic regression

S. Hayward, G. Cawley, Ruth Veevers, 2020, BMC Bioinformatics.

Classification of Domain Movements in Proteins Using Dynamic Contact Graphs

Steven Hayward, Gavin Cawley, Daniel Taylor, 2013, PloS one.

A comprehensive and non-redundant database of protein domain movements

Richard A. Lee, Steven Hayward, Guoying Qi, 2005, Bioinform..

DTA: dihedral transition analysis for characterization of the effects of large main-chain dihedral changes in proteins

Steven Hayward, Akio Kitao, Guoying Qi, 2009, Bioinform..

High quality rendering of protein dynamics in space filling mode.

Steven Hayward, Akio Kitao, Stephen Laycock, 2017, Journal of molecular graphics & modelling.

Virtual Environment for Studying the Docking Interactions of Rigid Biomolecules with Haptics

S. Hayward, S. Laycock, Georgios Iakovou, 2017, J. Chem. Inf. Model..