I. Shindyalov

发表

Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?

C. Sander, C. Sander, I. Shindyalov, 1994, Protein engineering.

A New Algorithm for the Alignment of Multiple Protein Structures Using Monte Carlo Optimization

Philip E. Bourne, Ilya N. Shindyalov, Chittibabu Guda, 2000, Pacific Symposium on Biocomputing.

The Protein Data Bank

T. N. Bhat, Philip E. Bourne, Zukang Feng, 2000, Nucleic Acids Res..

The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures

Tong Liu, Li Chen, Philip E. Bourne, 2003, Pacific Symposium on Biocomputing.

A comparative proteomics resource: proteins of Arabidopsis thaliana

Wilfred W. Li, I. Shindyalov, P. Bourne, 2003, Genome Biology.

Conserved key amino acid positions (CKAAPs) derived from the analysis of common substructures in proteins

P E Bourne, Wilfred W. Li, I N Shindyalov, 2001, Proteins.

Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices

Luciano Milanesi, Ilya N. Shindyalov, Nikolay A. Kolchanov, 1992, Comput. Appl. Biosci..

Computational Methods for Domain Partitioning of Protein Structures

Ilya N. Shindyalov, Stella Veretnik, I. Shindyalov, 2007 .

Combinatorial Extension ( CE ) using a Composite Property Description . A New Approach to 3-D Structure Alignment and its Application to the Protein Kinase Family

I. Shindyalov, P. Bourne, 2022 .

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path.

P E Bourne, I N Shindyalov, I. Shindyalov, 1998, Protein engineering.

The Protein Data Bank.

P E Bourne, H M Berman, H Weissig, 2002, Nucleic acids research.

The encyclopedia of life project: Grid software and deployment

Francine Berman, Henri Casanova, Philip E. Bourne, 2009, New Generation Computing.

Assigning new GO annotations to protein data bank sequences by combining structure and sequence homology

Julia V Ponomarenko, Philip E Bourne, Ilya N Shindyalov, 2005, Proteins.

An alternative view of protein fold space

P E Bourne, I N Shindyalov, I. Shindyalov, 2000, Proteins.

The Protein Data Bank, 1999–

Philip E. Bourne, Zukang Feng, Helge Weissig, 2006 .

The protein kinase resource.

P E Bourne, I N Shindyalov, M Gribskov, 1997, Trends in biochemical sciences.

Analysis of peptides from known proteins: Clusterization in sequence space

I. Shindyalov, V. Strelets, Hwa A. Lim, 1994, Journal of Molecular Evolution.

Common EF‐hand motifs in cholinesterases and neuroligins suggest a role for Ca2+ binding in cell surface associations

T. Südhof, I. Shindyalov, I. Tsigelny, 2008, Protein science : a publication of the Protein Society.

A Database of Pairwise Aligned 3-D Structures for the Acetylcholinesterases, Lipases and Other Homologous Proteins

Ilya N. Shindyalov, Philip E. Bourne, I. Shindyalov, 1998 .

CE-MC: a multiple protein structure alignment server

Philip E. Bourne, Ilya N. Shindyalov, Chittibabu Guda, 2004, Nucleic Acids Res..

PDP: protein domain parser

Ilya N. Shindyalov, Nickolai Alexandrov, I. Shindyalov, 2003, Bioinform..

A New Scoring Function and Associated Statistical Significance for Structure Alignment by CE

Philip E. Bourne, Ilya N. Shindyalov, Yuting Jia, 2004, J. Comput. Biol..

Building an automated classification of DNA-binding protein domains

Philip E. Bourne, Ilya N. Shindyalov, Julia V. Ponomarenko, 2002, ECCB.

Partitioning protein structures into domains: why is it so difficult?

Stella Veretnik, Philip E Bourne, Ilya N Shindyalov, 2006, Journal of molecular biology.

A database and tools for 3-D protein structure comparison and alignment using the Combinatorial Extension (CE) algorithm

Philip E. Bourne, Ilya N. Shindyalov, I. Shindyalov, 2001, Nucleic Acids Res..

Design and use of a software framework to obtain information derived from macromolecular structure data

Philip E. Bourne, Ilya N. Shindyalov, J. A. Cooper, 1995, Proceedings of the Twenty-Eighth Annual Hawaii International Conference on System Sciences.

CKAAPs DB: a Conserved Key Amino Acid Positions DataBase

Philip E. Bourne, Ilya N. Shindyalov, Wilfred W. Li, 2002, Nucleic Acids Res..

Toward consistent assignment of structural domains in proteins.

Stella Veretnik, Philip E Bourne, Ilya N Shindyalov, 2004, Journal of molecular biology.

Macromolecular structure databases: past progress and future challenges.

P E Bourne, H Weissig, I N Shindyalov, 1998, Acta crystallographica. Section D, Biological crystallography.

A case study of high-throughput biological data processing on parallel platforms

Philip E. Bourne, Ilya N. Shindyalov, Dmitry Pekurovsky, 2004, Bioinform..

The Protein Data Bank

I. Shindyalov, H. Berman, J. Westbrook, 2000, Nucleic Acids Res..

Single amino acid substitutions producing instability of globular proteins. Calculation of their frequencies in the entire mutational spectra of the α- and β-subunits of human hemoglobin

I. Shindyalov, N. A. Kolchanov, 2005, Journal of Molecular Evolution.

Analysis of the factors and implications of an empirical method for estimating the stability of mutant human haemoglobins.

I. Shindyalov, N. A. Kolchanov, 1985, Journal of theoretical biology.