D. Lilley

发表

Understanding DNA: The molecule and how it works

D. Lilley, 1993 .

Mechanisms of RNA catalysis

D. Lilley, 2011, Philosophical Transactions of the Royal Society B: Biological Sciences.

Novel Ligands for a Purine Riboswitch Discovered by RNA-Ligand Docking

D. Lilley, R. Brenk, R. Batey, 2011, Chemistry & biology.

The structure of a nucleolytic ribozyme that employs a catalytic metal ion

D. Lilley, Yanjun Liu, T. J. Wilson, 2017, Nature chemical biology.

The Kink Turn, a Key Architectural Element in RNA Structure

D. Lilley, Lin Huang, 2016, Journal of molecular biology.

Structure of the three-way helical junction of the hepatitis C virus IRES element.

D. Lilley, Yiliang Ding, J. Ouellet, 2010, RNA.

A nomenclature of junctions and branchpoints in nucleic acids.

N. Seeman, D. Lilley, R. Clegg, 1995, Nucleic acids research.

The chirality of a four-way helical junction in RNA.

D. Lilley, Terry A Goody, D. Norman, 2004, Journal of the American Chemical Society.

Structure, folding and activity of the VS ribozyme: importance of the 2‐3‐6 helical junction

D. Lilley, D. Norman, D. Lafontaine, 2001, The EMBO journal.

Global structure of four-way RNA junctions studied using fluorescence resonance energy transfer.

D. Lilley, A. Murchie, F. Walter, 1998, RNA.

The resolving enzyme CCE1 of yeast opens the structure of the four-way DNA junction.

M. F. White, D. Lilley, 1997, Journal of molecular biology.

Characterization of a Holliday junction-resolving enzyme from Schizosaccharomyces pombe

M. F. White, D. Lilley, 1997, Molecular and cellular biology.

New insight into the recognition of branched DNA structure by junction-resolving enzymes.

D. Lilley, A. Déclais, 2008, Current opinion in structural biology.

Single-molecule observation of the induction of k-turn RNA structure on binding L7Ae protein.

D. Lilley, Yanjun Liu, J. Ouellet, 2012, Biophysical journal.

The K-turn motif in riboswitches and other RNA species

D. Lilley, David M.J. Lilley, 2014, Biochimica et biophysica acta.

Folding of branched RNA species

D. Lilley, David M. J. Lilley, 1998, Biopolymers.

Folding of the adenine riboswitch.

D. Lilley, D. Lafontaine, J. Lemay, 2006, Chemistry & biology.

A structural database for k-turn motifs in RNA.

D. Lilley, J. Ouellet, K. Schroeder, 2010, RNA.

Structures of helical junctions in nucleic acids

D. Lilley, David M. J. Lilley, David M. J. Lilley, 2000, Quarterly Reviews of Biophysics.

The origins of RNA catalysis in ribozymes.

D. Lilley, 2003, Trends in biochemical sciences.

Structure, folding and catalysis of the small nucleolytic ribozymes.

D. Lilley, David M. J. Lilley, 1999, Current opinion in structural biology.

Structural dynamics of individual Holliday junctions

D. Lilley, S. McKinney, T. Ha, 2003, Nature Structural Biology.

Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids

D. Lilley, T. Ha, T. J. Wilson, 2008, Proceedings of the National Academy of Sciences.

Vesicle encapsulation studies reveal that single molecule ribozyme heterogeneities are intrinsic.

D. Lilley, T. Ha, T. J. Wilson, 2004, Biophysical journal.

Fluorescence energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules

D. Lilley, A. Murchie, R. Clegg, 1989, Nature.

Fluorescence-Force Spectroscopy Maps Two-Dimensional Reaction Landscape of the Holliday Junction

K. Schulten, D. Lilley, T. Ha, 2007, Science.

DNA replication, 2nd edn

D. Lilley, David M.J. Lilley, 1992 .

Observing spontaneous branch migration of Holliday junctions one step at a time.

Taekjip Ha, D. Lilley, S. McKinney, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Exploring rare conformational species and ionic effects in DNA Holliday junctions using single-molecule spectroscopy.

Taekjip Ha, Chirlmin Joo, D. Lilley, 2004, Journal of molecular biology.

All change at Holliday junction.

D. Lilley, 1997, Proceedings of the National Academy of Sciences of the United States of America.

The structure of the holliday junction, and its resolution

D. Lilley, A. Murchie, S. Diekmann, 1988, Cell.

Synthesis and physical analysis of DNA

D. Lilley, J. Dahlberg, 1992 .

Crystal structure of the Holliday junction resolving enzyme T7 endonuclease I

D. Lilley, S. Phillips, A. Déclais, 2001, Nature Structural Biology.

RNA Tertiary Interactions in a Riboswitch Stabilize the Structure of a Kink Turn

Peter Daldrop, D. Lilley, P. Daldrop, 2011, Structure.

Structure and mechanism of a methyltransferase ribozyme

D. Lilley, T. J. Wilson, Lin Huang, 2022, Nature Chemical Biology.

Human MutSalpha recognizes damaged DNA base pairs containing O6-methylguanine, O4-methylthymine, or the cisplatin-d(GpG) adduct.

D. Lilley, A. Murchie, D. R. Duckett, 1996, Proceedings of the National Academy of Sciences of the United States of America.

A non-empirical LCAO-SCF-MO investigation of cross sections through the potential energy surface for the [C2H2Cl]+ systems; comparison with the [C2H5+] and [C2H4F]+ systems

D. Lilley, D. Clark, 1973 .

Topological Coupling between Promoters

D. Lilley, Dongrong Chen, R. Bowater, 1994 .

Crystal structure and ligand-induced folding of the SAM/SAH riboswitch

D. Lilley, T. Ha, Lin Huang, 2020, Nucleic acids research.

Folding and Activity of the Hammerhead Ribozyme

D. Lilley, C. Hammann, 2002, Chembiochem : a European journal of chemical biology.

Control of box C/D snoRNP assembly by N6‐methylation of adenine

D. Lilley, Lin Huang, Jia Wang, 2017, EMBO reports.

Solution structure of a parallel-stranded tetraplex formed by d(TG4T) in the presence of sodium ions by nuclear magnetic resonance spectroscopy.

D. Lilley, A. Murchie, F. Aboul-Ela, 1994, Journal of molecular biology.

Mutational analysis of the DNA binding domain A of chromosomal protein HMG1.

D. Lilley, A. Murchie, M. Bianchi, 1994, Nucleic acids research.

DNA: Sequence, Structure and Supercoiling

D. Lilley, 1984 .

Effect of methylation of adenine N6 on kink turn structure depends on location

D. Lilley, Lin Huang, Saira Ashraf, 2019, RNA biology.

Supplementary Information Crystal Structure of the VS ribozyme

D. Lilley, J. Piccirilli, P. Rice, 2015 .

Topological promoter coupling in Escherichia coli: delta topA-dependent activation of the leu-500 promoter on a plasmid

D. Lilley, R. Bowater, D. Chen, 1994, Journal of bacteriology.

Human MutScv recognizes damaged DNA base pairs containing 06-methylguanine, 04-methylthymine, or the cisplatin-d(GpG) adduct

D. Lilley, A. Murchie, D. R. Duckett, 2005 .

Structure and mechanism of a methyltransferase ribozyme

D. Lilley, T. J. Wilson, Lin Huang, 2022, Nature Chemical Biology.

Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch

D. Lilley, Lin Huang, Jia Wang, 2020, RNA.

Structure and ligand binding of the SAM-V riboswitch

D. Lilley, Lin Huang, 2018, Nucleic acids research.

The gross level of in vitro RNA synthesis in HeLa nuclei is unaltered by histone hyperacetylation.

D. Lilley, A. Berendt, 1979, Biochemical and biophysical research communications.

Chromatin core particle unfolding induced by tryptic cleavage of histones.

D. Lilley, K. Tatchell, 1977, Nucleic acids research.

Molecular biology: Eukaryotic genes—are they under torsional stress?

D. Lilley, 1983, Nature.

University of Dundee A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme

D. Lilley, Yanjun Liu, A. Déclais, 2018 .

Activation of the leu-500 promoter: a topological domain generated by divergent transcription in a plasmid.

D. Lilley, R. Bowater, D. Chen, 1993, Biochemistry.

Supercoiled DNA and cruciform structures.

D. Lilley, A. Murchie, 1992, Methods in enzymology.

Stress‐induced cruciform formation in a cloned d(CATG)10 sequence.

D. Lilley, L. Naylor, J. H. Sande, 1986, The EMBO journal.

Site-specific recombination caught in the act.

D. Lilley, 1997, Chemistry & biology.

Applying a genetic cantilever

D. Lilley, M. Bianchi, 1995, Nature.

Search and processing of Holliday junctions within long DNA by junction-resolving enzymes

D. Lilley, S. Boulton, D. Rueda, 2022, Nature Communications.

Human ANKLE1 Branched DNA

D. Lilley, A. Gartner, Alasdair D. J. Freeman, 2020 .

A critical base pair in k-turns that confers folding characteristics and correlates with biological function

D. Lilley, Lin Huang, S. McPhee, 2014, Nature Communications.

Cruciform Extrusion in Supercoiled DNA — Mechanisms and Contextual Influence

D. Lilley, A. Murchie, K. Sullivan, 1988 .

The Extrusion of Cruciform Structures in Supercoiled DNA — Kinetics and Mechanisms

D. Lilley, A. Murchie, K. Sullivan, 1987 .

Folding of the four-way RNA junction of the hairpin ribozyme.

D. Lilley, A. Murchie, F. Walter, 1998, Biochemistry.

Ribocentre: a database of ribozymes

D. Lilley, Lin Huang, J. Deng, 2022, Nucleic Acids Res..

Folding of the natural hammerhead ribozyme is enhanced by interaction of auxiliary elements.

D. Lilley, S. Jayasena, A. Khvorova, 2004, RNA.

Folding and Activity of the Hammerhead Ribozyme

D. Lilley, C. Hammann, 2002, Chembiochem : a European journal of chemical biology.

Origins of RNA Catalysis in the Hairpin Ribozyme

D. Lilley, 2001, Chembiochem : a European journal of chemical biology.

Thermodynamics of ion-induced RNA folding in the hammerhead ribozyme: an isothermal titration calorimetric study.

D. Lilley, C. Hammann, A. Cooper, 2001, Biochemistry.

Effect of flanking sequences on the right- to left-handed transition of a (dA-dT)n tract in supercoiled DNA.

D. Lilley, E. Paleček, K. Nejedlý, 1996, Journal of biomolecular structure & dynamics.

Conformational junctions between left‐handed DNA in (dA‐dT)16 and contiguous B‐DNA in a supercoiled plasmid contain chemically reactive bases

D. Lilley, E. Paleček, K. Nejedlý, 1993, FEBS letters.

A two-state conformational equilibrium for alternating (A-T)n sequences in negatively supercoiled DNA.

D. Lilley, J. A. McClellan, 1987, Journal of molecular biology.

Dissection of the ion-induced folding of the hammerhead ribozyme using 19F NMR

D. Lilley, D. Norman, C. Hammann, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Hairpin-loop formation by inverted repeats in supercoiled DNA is a local and transmissible property.

D. Lilley, D.M.J. Lilley, 1981, Nucleic acids research.

Nuclear magnetic resonance study of a deoxyoligonucleotide duplex containing a three base bulge.

D. Lilley, A. Murchie, S. Homans, 1993, Journal of molecular biology.

The Novel Chemical Mechanism of the Twister Ribozyme.

D. Lilley, Yanjun Liu, T. J. Wilson, 2016, Journal of the American Chemical Society.

Nucleic Acids and Molecular Biology

D. Lilley, F. Eckstein, Kazuhiko Nakatani, 1992, Nucleic Acids and Molecular Biology.

The high-resolution crystal structure of a parallel-stranded guanine tetraplex.

P C Moody, D. Lilley, A. Murchie, 1994, Science.

Synthesis of novel tetrazole C5-linked C0- and C2-ribonucleoside phosphoramidites using MePOM and POM groups for probing RNA catalysis

D. Lilley, T. J. Wilson, S. McPhee, 2012 .

Molecular core binding energies for some five membered ring heterocycles as determined by X-ray photoelectron spectroscopy

D. Lilley, D. Clark, 1971 .

Synthesis of Imidazole C1- and C3-Ribonucleoside Phosphoramidites for Probing Catalytic Mechanism in Ribozyme

D. Lilley, S. Harusawa, Kensuke Fujii, 2011 .

Carbon-13-NMR of peptides and proteins

D. Lilley, O. Howarth, 1978 .

The crystal structure of a parallel-stranded guanine tetraplex at 0.95 A resolution.

D. Lilley, Z. Dauter, A. Murchie, 1997, Journal of molecular biology.

A general and efficient approach for the construction of RNA oligonucleotides containing a 5′-phosphorothiolate linkage

D. Lilley, J. Piccirilli, J. Frederiksen, 2010, Nucleic acids research.

Catalytic RNA

D. Lilley, F. Eckstein, F. Eckstein, 1997, Nucleic Acids and Molecular Biology.

(A-T)n tracts embedded in random sequence DNA--formation of a structure which is chemically reactive and torsionally deformable.

D. Lilley, E. Paleček, J. A. McClellan, 1986, Nucleic acids research.

Build your DNA kit: by William G. Thilly and Alexander Varshavsky, Butterworths, 1987. £15 + VAT, ISBN 0 409 90094 X

D. Lilley, 1988 .

DNA Repair

D. Lilley, F. Eckstein, F. Eckstein, 1998, Nucleic Acids and Molecular Biology.

Structure and function of chromatin.

D. Lilley, J. Pardon, 1979, Annual review of genetics.

Orientation of cyanine fluorophores terminally attached to DNA via long, flexible tethers.

D. Lilley, T. J. Wilson, J. Ouellet, 2011, Biophysical journal.

A chemo-genetic approach for the study of nucleobase participation in nucleolytic ribozymes

D. Lilley, 2007, Biological chemistry.

Mass determination of phosphoramidites.

D. Lilley, S. Harusawa, T. Kurihara, 2006, Current protocols in nucleic acid chemistry.

Nucleobase catalysis in the hairpin ribozyme.

D. Lilley, T. J. Wilson, J. Ouellet, 2006, RNA.

Synthesis of novel C4-linked imidazole ribonucleoside phosphoramidites for probing general acid and base catalysis in ribozyme

D. Lilley, S. Harusawa, Lisa Araki, 2005 .

Accurate molecular weight measurements of nucleoside phosphoramidites: a suitable matrix of mass spectrometry

D. Lilley, S. Harusawa, Lisa Araki, 2005 .

Synthesis of C4-linked imidazole ribonucleoside phosphoramidite with pivaloyloxymethyl (POM) group

D. Lilley, S. Harusawa, Lisa Araki, 2004 .

Nucleobase participation in ribozyme catalysis.

D. Lilley, S. Harusawa, Lisa Araki, 2005, Journal of the American Chemical Society.

Efficient synthesis of 2'-O-cyanoethylated imidazole C-ribonucleoside phosphoramidite: a practical building block for probing the catalytic mechanism of ribozymes

D. Lilley, S. Harusawa, Lisa Araki, 2010 .

Synthesis of novel C4-linked C2-imidazole ribonucleoside phosphoramidite and its application to probing the catalytic mechanism of a ribozyme.

D. Lilley, T. J. Wilson, S. Harusawa, 2009, The Journal of organic chemistry.

A guanine nucleobase important for catalysis by the VS ribozyme

D. Lilley, T. J. Wilson, Aileen C McLeod, 2007, The EMBO journal.

Functional group requirements in the probable active site of the VS ribozyme.

D. Lilley, T. J. Wilson, D. Lafontaine, 2002, Journal of molecular biology.

The A730 loop is an important component of the active site of the VS ribozyme.

D. Lilley, T. J. Wilson, D. Norman, 2001, Journal of molecular biology.

A mechanistic comparison of the Varkud satellite and hairpin ribozymes.

D. Lilley, T. J. Wilson, 2013, Progress in molecular biology and translational science.

RNA folding and the origins of catalytic activity in the hairpin ribozyme.

D. Lilley, T. Ha, T. J. Wilson, 2007, Blood cells, molecules & diseases.

Chapter 5:The Hairpin and Varkud Satellite Ribozymes

D. Lilley, 2007 .

Efficient Synthesis of 2′‐O‐Cyanoethylated Imidazole C‐Ribonucleoside Phosphoramidite: A Practical Building Block for Probing the Catalytic Mechanism of Ribozymes.

D. Lilley, S. Harusawa, Lisa Araki, 2010 .

The complete VS ribozyme in solution studied by small-angle X-ray scattering.

D. Lilley, S. Doniach, J. Ouellet, 2008, Structure.

The folding of the hairpin ribozyme: dependence on the loops and the junction.

D. Lilley, T. J. Wilson, Z. Y. Zhao, 2000, RNA.

Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops.

D. Lilley, A. Murchie, F. Walter, 1998, Molecular cell.

Structure and activity of the hairpin ribozyme in its natural junction conformation: effect of metal ions.

D. Lilley, A. Murchie, F. Walter, 1998, Biochemistry.

Folding and catalysis by the hairpin ribozyme

D. Lilley, David M.J Lilley, 1999, Biochemical Society transactions.

RNA folding and catalysis

D. Lilley, 2004, Genetica.

Metal ion binding and the folding of the hairpin ribozyme.

D. Lilley, T. J. Wilson, 2002, RNA.

The influence of junction conformation on RNA cleavage by the hairpin ribozyme in its natural junction form.

D. Lilley, J. Thomson, David M. J. Lilley, 1999, RNA.

Chapter 10 RNA FOLDING AND CATALYSIS

D. Lilley, 1999 .

Classification of the nucleolytic ribozymes based upon catalytic mechanism

D. Lilley, 2019, F1000Research.

Observation of internal cleavage and ligation reactions of a ribozyme

D. Lilley, T. Ha, T. J. Wilson, 2004, Nature Structural &Molecular Biology.

Catalysis by the nucleolytic ribozymes.

D. Lilley, 2011, Biochemical Society transactions.

Do the hairpin and VS ribozymes share a common catalytic mechanism based on general acid-base catalysis? A critical assessment of available experimental data.

D. Lilley, T. J. Wilson, David M J Lilley, 2011, RNA.

Nucleic acid structure and recognition.

D. Lilley, A. Murchie, R. Clegg, 1997, Biophysical chemistry.

Ionic interactions and the global conformations of the hammerhead ribozyme

D. Lilley, A. Murchie, David M.J. Lilley, 1995, Nature Structural Biology.

Structure of Parallel-Stranded Guanine Tetraplexes

D. Lilley, A. Murchie, B. Luisi, 1995 .

NMR study of parallel-stranded tetraplex formation by the hexadeoxynucleotide d(TG4T)

D. Lilley, A. Murchie, F. Aboul-ela, 1992, Nature.

Single base mismatches in DNA. Long- and short-range structure probed by analysis of axis trajectory and local chemical reactivity.

D. Lilley, A. Bhattacharyya, 1989, Journal of molecular biology.

Stereospecific effects determine the structure of a four-way DNA junction.

D. Lilley, S. McKinney, T. Ha, 2005, Chemistry & biology.

Uranyl photoprobing of a four‐way DNA junction: evidence for specific metal ion binding.

D. Lilley, A. Murchie, P. Nielsen, 1994, The EMBO journal.

Structural Tools for the Analysis of Protein-Nucleic Acid Complexes

D. Suck, D. Lilley, H. Heumann, 1992 .

The mechanism of cruciform formation in supercoiled DNA: initial opening of central basepairs in salt-dependent extrusion.

D. Lilley, A. Murchie, 1987, Nucleic acids research.

A dominant influence of flanking sequences on a local structural transition in DNA

D. Lilley, K. Sullivan, 1986, Cell.

Facile cruciform formation by an (A-T)34 sequence from a Xenopus globin gene.

D. Lilley, D. Greaves, R. Patient, 1985, Journal of molecular biology.

Thermodynamics of the ColE1 cruciform. Comparisons between probing and topological experiments using single topoisomers.

D. Lilley, L. Hallam, 1984, Journal of molecular biology.

The nature of the interaction of nucleosomes with a eukaryotic RNA polymerase II.

D. Lilley, M. Houghton, M. Jacobs, 1979, Nucleic acids research.

The interaction of RNA polymerase II from wheat with supercoiled and linear plasmid templates.

D. Lilley, M. Houghton, 1979, Nucleic acids research.

Fluorescent RNA cytosine analogue – an internal probe for detailed structure and dynamics investigations

D. Lilley, L. M. Wilhelmsson, S. McPhee, 2017, Scientific Reports.

Coordination of structure-specific nucleases by human SLX4/BTBD12 is required for DNA repair.

C. Ponting, D. Lilley, L. Sánchez-Pulido, 2009, Molecular cell.

Mechanisms of Transcription

D. Lilley, F. Eckstein, 1997, Nucleic Acids and Molecular Biology.

Tetraplex folding of telomere sequences and the inclusion of adenine bases.

D. Lilley, A. Murchie, A.I. Murchie, 1994, The EMBO journal.

Structural alteration in alternating adenine-thymine sequences in positively supercoiled DNA.

D. Lilley, J. A. McClellan, 1991, Journal of molecular biology.

Superhelical torsion in cellular DNA responds directly to environmental and genetic factors.

D. Lilley, E. Paleček, P. Boublǐková, 1990, Proceedings of the National Academy of Sciences of the United States of America.

The electronic structures of ethyl cation and protonated ethylene; a non-empirical LCAO–MO–SCF investigation

D. Lilley, D. Clark, 1970 .

Hairpin-loops in supercoiled DNA

D. Lilley, 1982 .

Barriers to internal rotation in carbonium ions: a non-empirical LCAO–MO–SCF investigation of 1- and 2-fluoroethyl cations

D. Lilley, D. Clark, 1970 .

The electronic structure of bridge-protonated fluoroethylene and the interconversion of 1- and 2-fluoroethyl cations

D. Lilley, D. Clark, 1970 .

DNA-protein: structural interactions

D. Lilley, David M. J. Lilley, 1995 .

Chemical synthesis and cloning of a gene for human β-urogastrone

D. Lilley, I. Fotheringham, H. Lewis, 1982 .

The DNA binding site of HMG1 protein is composed of two similar segments (HMG boxes), both of which have counterparts in other eukaryotic regulatory proteins.

D. Lilley, L. Falciola, S. Ferrari, 1992, The EMBO journal.

Recognition and manipulation of branched DNA structure by junction-resolving enzymes.

M. F. White, D. Lilley, M. Giraud-Panis, 1997, Journal of molecular biology.

Identification of KIAA1018/FAN1, a DNA Repair Nuclease Recruited to DNA Damage by Monoubiquitinated FANCD2

Kay Hofmann, John Rouse, Thomas Helleday, 2010, Cell.

Induced fit of RNA on binding the L7Ae protein to the kink-turn motif.

Ben Turner, D. Lilley, T. J. Wilson, 2005, RNA.

Analysis of global conformational transitions in ribozymes.

D. Lilley, 2004, Methods in molecular biology.

Large-scale stable opening of supercoiled DNA in response to temperature and supercoiling in (A + T)-rich regions that promote low-salt cruciform extrusion.

D. Lilley, R. Bowater, F. Aboul-ela, 1991, Biochemistry.

The potential versatility of RNA catalysis

D. Lilley, T. J. Wilson, 2021, Wiley interdisciplinary reviews. RNA.

Ribozymes and the mechanisms that underlie RNA catalysis

Yijin Liu, D. Lilley, Yanjun Liu, 2016, Frontiers of Chemical Science and Engineering.

The chemical origins of life and its early evolution: an introduction

D. Lilley, J. Sutherland, 2011, Philosophical Transactions of the Royal Society B: Biological Sciences.

Structure, folding and mechanisms of ribozymes.

D. Lilley, David M J Lilley, 2005, Current opinion in structural biology.

The structure of the chromatin core particle in solution.

D. Lilley, J. Wooley, D. Worcester, 1977, Nucleic acids research.

The sub-structure of nucleosomes.

D. Lilley, B. Richards, J. Wooley, 1977, Cell biology international reports.

A critical base pair in k-turns determines the conformational class adopted, and correlates with biological function

Lin Huang, D. Lilley, Lin Huang, 2016, Nucleic acids research.

Conformational flexibility of four-way junctions in RNA.

Taekjip Ha, Robert M Clegg, D. Lilley, 2004, Journal of molecular biology.

A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate

Taekjip Ha, Robert M Clegg, D. Lilley, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Fluorescence resonance energy transfer as a structural tool for nucleic acids.

D. Lilley, T. J. Wilson, 2000, Current opinion in chemical biology.

Ion‐induced folding of the hammerhead ribozyme: a fluorescence resonance energy transfer study

D. Lilley, A. Murchie, R. Clegg, 1997, The EMBO journal.

DNA supercoiling.

D. Lilley, 1986, Biochemical Society transactions.

Protein Phosphatase 2A (PP2A)-specific Ubiquitin Ligase MID1 Is a Sequence-dependent Regulator of Translation Efficiency Controlling 3-Phosphoinositide-dependent Protein Kinase-1 (PDPK-1)*

D. Lilley, S. Schweiger, R. Schneider, 2011, The Journal of Biological Chemistry.

Functional organization of box C/D RNA-guided RNA methyltransferase

D. Lilley, K. Ye, Lin Huang, 2020, Nucleic acids research.

Roles of Topoisomerases in Maintaining Steady-state DNA Supercoiling in Escherichia coli *

A. Khodursky, N. Cozzarelli, D. Lilley, 2000, The Journal of Biological Chemistry.

How RNA acts as a nuclease: some mechanistic comparisons in the nucleolytic ribozymes.

D. Lilley, 2017, Biochemical Society transactions.

Activity of a plasmid-borne leu-500 promoter depends on the transcription and translation of an adjacent gene.

D. Lilley, R. Bowater, C. Dorman, 1992, Proceedings of the National Academy of Sciences of the United States of America.

Bacterial chromatin: A new twist to an old story

D. Lilley, 1986, Nature.

Transcription and DNA Topology in Eubacteria

D. Lilley, 1997 .

The genetic control of DNA supercoiling in Salmonella typhimurium.

D. Lilley, C. Higgins, S. Richardson, 1984, The EMBO journal.

Base methylation and local DNA helix stability. Effect on the kinetics of cruciform extrusion.

D. Lilley, A. Murchie, A I Murchie, 1989, Journal of molecular biology.

DNA supercoiling and transcription: topological coupling of promoters

D. Lilley, R. Bowater, D. Chen, 1996, Quarterly Reviews of Biophysics.

Activation of the leu-500 Promoter by a Reversed Polarity tetA Gene

D. Lilley, S. Bachellier, Dongrong Chen, 1998, The Journal of Biological Chemistry.

Local DNA topology and gene expression: the case of the leu‐500 promoter

D. Lilley, C. Higgins, C. F. Higgins, 1991, Molecular microbiology.

Fluorescence resonance energy transfer analysis of the structure of the four-way DNA junction.

D. Lilley, A. Murchie, R. Clegg, 1992, Biochemistry.

Dissection of the sequence specificity of the Holliday junction endonuclease CCE1.

M. F. White, D. Lilley, M. Schofield, 1998, Biochemistry.

Elevated unconstrained supercoiling of plasmid DNA generated by transcription and translation of the tetracycline resistance gene in eubacteria.

D. Lilley, R. Bowater, D. Chen, 1994, Biochemistry.

Modulation of tyrT promoter activity by template supercoiling in vivo.

D. Lilley, D. Chen, R.P. Bowater, 1994, The EMBO journal.

Analysis of global conformation of branched RNA species using electrophoresis and fluorescence.

D. Lilley, 2000, Methods in enzymology.

Transcription-induced hypersupercoiling of plasmid DNA.

D. Lilley, D. Chen, 1999, Journal of molecular biology.

Local DNA topology and gene expression: the case of the leu-500 promoter.

D. Lilley, C. Higgins, 1991, Molecular microbiology.

Cruciform-resolvase interactions in supercoiled DNA

D. Lilley, B. Kemper, 1984, Cell.

Structural isomerization in DNA: the formation of cruciform structures in supercoiled DNA molecules

D. Lilley, 1989 .

Effects of base mismatches on the structure of the four-way DNA junction.

D. Lilley, D. R. Duckett, 1991, Journal of molecular biology.

DNA structure: Bent molecules—how and why?

D. Lilley, 1986, Nature.

DNA opens up--supercoiling and heavy breathing.

D. Lilley, 1988, Trends in genetics : TIG.

Cooperative Control of Holliday Junction Resolution and DNA Repair by the SLX1 and MUS81-EME1 Nucleases

D. Lilley, J. Arthur, A. Déclais, 2013, Molecular cell.

Generation of Superhelical Torsion by ATP-Dependent Chromatin Remodeling Activities

D. Lilley, R. Kingston, T. Owen-Hughes, 2000, Cell.

Biochemical and Structural Properties of Fungal Holliday Junction-Resolving Enzymes.

D. Lilley, A. Gartner, Yanjun Liu, 2018, Methods in enzymology.

Holliday junction‐resolving enzymes—structures and mechanisms

D. Lilley, 2017, FEBS letters.

The importance of the N-terminus of T7 endonuclease I in the interaction with DNA junctions.

D. Lilley, A. Déclais, Alasdair D. J. Freeman, 2013, Journal of molecular biology.

Analysis of branched nucleic acid structure using comparative gel electrophoresis

D. Lilley, 2008, Quarterly Reviews of Biophysics.

Metal ion binding in the active site of the junction-resolving enzyme T7 endonuclease I in the presence and in the absence of DNA.

D. Lilley, A. Déclais, Alasdair D. J. Freeman, 2003, Journal of molecular biology.

Metal ions bound at the active site of the junction‐resolving enzyme T7 endonuclease I

D. Lilley, S. Phillips, A. Déclais, 2002, The EMBO journal.

Holliday Junction Resolution Is Modulated by Archaeal Chromatin Components in Vitro *

M. F. White, D. Lilley, C. Bond, 2002, The Journal of Biological Chemistry.

The junction-resolving enzymes

M. F. White, D. Lilley, 2001, Nature Reviews Molecular Cell Biology.

The active site of the junction-resolving enzyme T7 endonuclease I.

D. Lilley, S. Phillips, A. Déclais, 2001, Journal of molecular biology.

Catalytic and binding mutants of the junction-resolving enzyme endonuclease I of bacteriophage t7: role of acidic residues.

M. J. Parkinson, D. Lilley, D M Lilley, 1999, Nucleic acids research.

The junction-resolving enzyme T7 endonuclease I: quaternary structure and interaction with DNA.

M. J. Parkinson, D. Lilley, 1997, Journal of molecular biology.

T4 Endonuclease VII

D. Lilley, M. Giraud-Panis, Marie-Josèphe E. Giraud-Panis, 1996, The Journal of Biological Chemistry.

The structure-selectivity and sequence-preference of the junction-resolving enzyme CCE1 of Saccharomyces cerevisiae.

M. F. White, D. Lilley, David M. J. Lilley, 1996, Journal of molecular biology.

An investigation of the conformational and self-aggregational processes of histones using 1H and 13C nuclear magnetic resonance.

D. Lilley, B. Richards, O. Howarth, 1975, Biochemistry.

Dynamic, sequence-dependent DNA structure as exemplified by cruciform extrusion from inverted repeats in negatively supercoiled DNA.

D. Lilley, 1983, Cold Spring Harbor symposia on quantitative biology.

The structure of branched DNA species

D. Lilley, R. Clegg, 1993, Quarterly Reviews of Biophysics.

HMG has DNA wrapped up

D. Lilley, 1992, Nature.

Large-scale opening of A + T rich regions within supercoiled DNA molecules is suppressed by salt.

D. Lilley, R. Bowater, F. Aboul-ela, 1994, Nucleic acids research.

The structural basis of Holliday junction resolution by T7 endonuclease I

D. Lilley, S. Phillips, A. Déclais, 2007, Nature.

The contrasting structures of mismatched DNA sequences containing looped-out bases (bulges) and multiple mismatches (bubbles).

D. Lilley, A. Bhattacharyya, 1989, Nucleic acids research.

Kinking of RNA helices by bulged bases, and the structure of the human immunodeficiency virus transactivator response element.

D. Lilley, A. Bhattacharyya, S. McAteer, 1992, Journal of molecular biology.

RNA bulges and the helical periodicity of double-stranded RNA

D. Lilley, A. Murchie, A. Bhattacharyya, 1990, Nature.

The structure of cruciforms in supercoiled DNA: probing the single‐stranded character of nucleotide bases with bisulphite.

D. Lilley, K. Sullivan, G. W. Gough, 1986, The EMBO journal.

Effect of methylation of adenine N6 on kink turn structure depends on location

D. Lilley, Lin Huang, Saira Ashraf, 2019, RNA biology.

Binding of U1A protein to the 3' untranslated region of its pre-mRNA.

D. Lilley, D. Norman, R. J. Grainger, 1999, Journal of molecular biology.

Severe axial bending of RNA induced by the U1A binding element present in the 3' untranslated region of the U1A mRNA.

D. Lilley, A. Murchie, D. Norman, 1997, Journal of molecular biology.

Scattering studies of chromatin subunits.

D. Lilley, B. Richards, A. Campbell, 1978, Cold Spring Harbor symposia on quantitative biology.

Thestructure ofthechromatin coreparticle insolution

D. Lilley, B. Richards, J. Wooley, 1977 .

HMG box proteins bind to four‐way DNA junctions in their open conformation

D. Lilley, D. Norman, J. Bramham, 1998, The EMBO journal.

Model for the interaction of DNA junctions and resolving enzymes.

D. Lilley, A. Murchie, S. Diekmann, 1991, Journal of molecular biology.

Structural perturbation in supercoiled DNA: hypersensitivity to modification by a single-strand-selective chemical reagent conferred by inverted repeat sequences.

D. Lilley, 1983, Nucleic acids research.

The inverted repeat as a recognizable structural feature in supercoiled DNA molecules.

D. Lilley, D M Lilley, 1980, Proceedings of the National Academy of Sciences of the United States of America.

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

Feng Ding, Janusz M Bujnicki, Lin Huang, 2020, RNA.

Helix opening transitions in supercoiled DNA.

D. Lilley, A. Murchie, R. Bowater, 1992, Biochimica et biophysica acta.

Comparative gel electrophoresis analysis of helical junctions in RNA.

D. Lilley, 2009, Methods in enzymology.

Extensive central disruption of a four-way junction on binding CCE1 resolving enzyme.

D. Lilley, A. Déclais, 2000, Journal of molecular biology.

The Caenorhabditis elegans Homolog of Gen1/Yen1 Resolvases Links DNA Damage Signaling to DNA Double-Strand Break Repair

D. Lilley, A. Gartner, A. Déclais, 2010, PLoS genetics.

FAN1 Activity on Asymmetric Repair Intermediates Is Mediated by an Atypical Monomeric Virus-type Replication-Repair Nuclease Domain

D. Lilley, I. Taylor, S. Smerdon, 2014, Cell reports.

GEN1 from a Thermophilic Fungus Is Functionally Closely Similar to Non-Eukaryotic Junction-Resolving Enzymes

D. Lilley, A. Gartner, Yanjun Liu, 2014, Journal of molecular biology.

University of Dundee GEN 1 from a thermophilic fungus is functionally closely similar to non-eukaryotic junction-resolving enzymes

D. Lilley, A. Gartner, Yanjun Liu, 2014 .

A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1

D. Lilley, Yanjun Liu, A. Déclais, 2018, Nucleic acids research.

Probes of DNA structure.

D. Lilley, 1992, Methods in enzymology.

Resolving the relationships of resolving enzymes.

M. F. White, D. Lilley, D M Lilley, 2000, Proceedings of the National Academy of Sciences of the United States of America.

Structural recognition and distortion by the DNA junction-resolving enzyme RusA.

D. Lilley, M. Giraud-Panis, 1998, Journal of molecular biology.

Crystal Structure of a Eukaryotic GEN1 Resolving Enzyme Bound to DNA

D. Lilley, A. Gartner, Yanjun Liu, 2015, Cell reports.

The structure of DNA junctions and their interaction with enzymes.

D. Lilley, A. Murchie, R. Clegg, 1992, European journal of biochemistry.

TRF2 promotes, remodels and protects telomeric Holliday junctions

S. West, D. Lilley, E. Gilson, 2009, The EMBO journal.

The structure of the four-way junction in DNA.

D. Lilley, R. Clegg, 1993, Annual review of biophysics and biomolecular structure.

Structural investigations of chromatin core protein by nuclear magnetic resonance.

D. Lilley, B. Richards, J. Pardon, 1977, Biochemistry.

Linking folding dynamics and function of SAM/SAH riboswitches at the single molecule level

Laura R. Ganser, D. Lilley, T. Ha, 2023, bioRxiv.

Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets

D. Lilley, Lin Huang, Xiaowei Lin, 2023, Nucleic acids research.

Structure and folding of four putative kink turns identified in structured RNA species in a test of structural prediction rules

D. Lilley, T. J. Wilson, Lin Huang, 2021, Nucleic acids research.

Human ANKLE1 Is a Nuclease Specific for Branched DNA

D. Lilley, A. Gartner, Alasdair D. J. Freeman, 2020, bioRxiv.

Structure and ligand binding of the glutamine-II riboswitch

Lin Huang, Rhiju Das, Andrew M Watkins, 2019, Nucleic acids research.

Comparison of the Structures and Mechanisms of the Pistol and Hammerhead Ribozymes

D. Lilley, J. Piccirilli, Yanjun Liu, 2019, Journal of the American Chemical Society.

Structure-guided design of a high-affinity ligand for a riboswitch

D. Lilley, T. J. Wilson, Lin Huang, 2019, RNA.

Structure of the Guanidine III Riboswitch

Lin Huang, D. Lilley, T. J. Wilson, 2017, Cell chemical biology.

The Structure of the Guanidine-II Riboswitch

D. Lilley, Lin Huang, Jia Wang, 2017, Cell chemical biology.

University of Dundee The structure of the Guanidine-III

D. Lilley, T. J. Wilson, Lin Huang, 2017 .

A quasi-cyclic RNA nano-scale molecular object constructed using kink turns† †Electronic supplementary information (ESI) available: PDF file comprising eight figures and three tables of data. See DOI: 10.1039/c6nr05186c Click here for additional data file.

D. Lilley, Lin Huang, 2016, Nanoscale.

Analysis of the Intrinsically Disordered N-Terminus of the DNA Junction-Resolving Enzyme T7 Endonuclease I: Identification of Structure Formed upon DNA Binding

D. Lilley, D. Norman, A. Déclais, 2016, Biochemistry.

Crystal structure and mechanistic investigation of the twister ribozyme.

Yijin Liu, D. Lilley, Yanjun Liu, 2014, Nature chemical biology.

Structure of a rare non-standard sequence k-turn bound by L7Ae protein

D. Lilley, Lin Huang, 2014, Nucleic acids research.

The molecular recognition of kink-turn structure by the L7Ae class of proteins

D. Lilley, Lin Huang, 2013, RNA.

Measurement of the change in twist at a helical junction in RNA using the orientation dependence of FRET.

D. Lilley, Tomas Fessl, 2013, Biophysical journal.

The functional exchangeability of pk- and k-turns in RNA structure

D. Lilley, B. Masquida, P. Daldrop, 2013, RNA biology.

Structure and folding of a rare, natural kink turn in RNA with an A*A pair at the 2b*2n position.

D. Lilley, P. Daldrop, K. Schroeder, 2012, RNA.

The structure of sulfoindocarbocyanine 3 terminally attached to dsDNA via a long, flexible tether.

D. Lilley, D. Norman, L. Urnavicius, 2012, Biophysical journal.

Analysis of conformational changes in the DNA junction-resolving enzyme T7 endonuclease I on binding a four-way junction using EPR.

D. Lilley, D. Norman, Alasdair D. J. Freeman, 2011, Biochemistry.

Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme

D. Lilley, J. Piccirilli, J. Frederiksen, 2010, Proceedings of the National Academy of Sciences.

IRES element Structure of the three-way helical junction of the hepatitis C virus

D. Lilley, Yiliang Ding, J. Ouellet, 2010 .

Ion-induced folding of a kink turn that departs from the conventional sequence

D. Lilley, K. Schroeder, 2009, Nucleic acids research.

The importance of G.A hydrogen bonding in the metal ion- and protein-induced folding of a kink turn RNA.

D. Lilley, Ben Turner, 2008, Journal of molecular biology.

The structure of cyanine 5 terminally attached to double-stranded DNA: implications for FRET studies.

D. Lilley, A. Iqbal, D. Norman, 2008, Biochemistry.

The role of specific 2'-hydroxyl groups in the stabilization of the folded conformation of kink-turn RNA.

D. Lilley, David M J Lilley, Jia Liu, 2006, RNA.

Structural recognition between a four-way DNA junction and a resolving enzyme.

D. Lilley, A. Déclais, Alasdair D. J. Freeman, 2006, Journal of molecular biology.

Electrostatic interactions and the folding of the four-way DNA junction: analysis by selective methyl phosphonate substitution.

D. Lilley, A. Déclais, J. Liu, 2004, Journal of molecular biology.

The kink-turn motif in RNA is dimorphic, and metal ion-dependent.

D. Lilley, S. Melcher, Terry A Goody, 2004, RNA.

The dynamic nature of the four-way junction of the hepatitis C virus IRES.

D. Lilley, T. J. Wilson, S. Melcher, 2003, RNA.

The complex between a four‐way DNA junction and T7 endonuclease I

D. Lilley, S. Phillips, A. Déclais, 2003, The EMBO journal.

The global structure of the VS ribozyme

D. Lilley, D. Norman, D. Lafontaine, 2002, The EMBO journal.

Distortion of DNA junctions imposed by the binding of resolving enzymes: a fluorescence study.

M. F. White, D. Lilley, M. Kvaratskhelia, 2001, Journal of molecular biology.

Near‐simultaneous DNA cleavage by the subunits of the junction‐resolving enzyme T4 endonuclease VII

D. Lilley, M. Giraud-Panis, 1997, The EMBO journal.

The solution structure of the four-way DNA junction at low-salt conditions: a fluorescence resonance energy transfer analysis.

D. Lilley, A. Murchie, R. Clegg, 1994, Biophysical journal.

The stereochemistry of a four-way DNA junction: a theoretical study.

D. Lilley, S. Diekmann, E. von Kitzing, 1990, Nucleic acids research.

Helix stability and the mechanism of cruciform extrusion in supercoiled DNA molecules.

D. Lilley, K. Sullivan, 1988, Nucleic acids research.

Influence of cation size and charge on the extrusion of a salt-dependent cruciform.

D. Lilley, K. Sullivan, 1987, Journal of molecular biology.

The kinetic properties of cruciform extrusion are determined by DNA base-sequence.

D. Lilley, 1985, Nucleic acids research.

Structure of the four-way DNA junction and its interaction with proteins.

D. Lilley, A. Murchie, D. R. Duckett, 1995, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

Molecular recognition of DNA structure by proteins that mediate genetic recombination

D. Lilley, 1994, Journal of molecular recognition : JMR.

Genetic recombination: four-way DNA junctions and their resolution.

D. Lilley, 1990, Current opinion in cell biology.

The structure of the helical four-way junction in DNA, and its role in genetic recombination.

D. Lilley, 1990 .

DNA bending induced by cruciform formation

D. Lilley, G. W. Gough, 1985, Nature.

RNA Structure and Interactions With Proteins

D. Lilley, 1995 .

The supercoil‐stabilised cruciform of ColE1 is hyper‐reactive to osmium tetroxide.

D. Lilley, E. Paleček, 1984, The EMBO journal.

Highly selective chemical modification of cruciform loops by diethyl pyrocarbonate.

D. Lilley, J. Furlong, 1986, Nucleic acids research.

Cyclic adduct formation at structural perturbations in supercoiled DNA molecules.

D. Lilley, 1986, IARC scientific publications.

The physical chemistry of cruciform structures in supercoiled DNA molecules.

D. Lilley, K. Sullivan, L. Hallam, 1985, Biochimie.

DNA: sequence, structure and supercoiling. The twentieth Colworth medal lecture.

D. Lilley, 1984, Biochemical Society transactions.

The role of metal ions in the conformation of the four‐way DNA junction.

D. Lilley, A. Murchie, D. R. Duckett, 1990, The EMBO journal.

DNA supercoiling and the leu‐500 promoter mutation of Salmonella typhimurium.

D. Lilley, C. Higgins, S. M. Richardson, 1988, The EMBO journal.

Homologous Recombination: A ring for a warhead

D. Lilley, 1994, Current Biology.

Long‐range structural effects in supercolied DNA: Statistical thermodynamics reveals a correlation between calculated cooperative melting and contextual influence on cruciform extrusion

D. Lilley, Francis Schaeffer, Edouard Yeramian, 1989, Biopolymers.

Ensuring productive resolution by the junction-resolving enzyme RuvC: large enhancement of the second-strand cleavage rate.

D. Lilley, J. Fogg, 2000, Biochemistry.

Junction resolving enzymes use multivalency to keep the Holliday junction dynamic

D. Lilley, T. Ha, Ruobo Zhou, 2018, Nature Chemical Biology.

Yeast resolving enzyme CCE1 makes sequential cleavages in DNA junctions within the lifetime of the complex.

D. Lilley, M. Schofield, A. Déclais, 2000, Biochemistry.

Sequence and functional-group specificity for cleavage of DNA junctions by RuvC of Escherichia coli.

M. F. White, D. Lilley, M. Schofield, 1999, Biochemistry.

Interaction of the resolving enzyme YDC2 with the four-way DNA junction.

M. F. White, D. Lilley, 1998, Nucleic acids research.

Exchange between stacking conformers in a four-Way DNA junction.

D. Lilley, A. Murchie, R. J. Grainger, 1998, Biochemistry.

T4 endonuclease VII selects and alters the structure of the four-way DNA junction; binding of a resolution-defective mutant enzyme.

D. Lilley, M. Giraud-Panis, J. Pöhler, 1996, Journal of molecular biology.

T4 endonuclease VII cleaves DNA containing a cisplatin adduct.

D. Lilley, A. Murchie, 1993, Journal of molecular biology.

Resolution of model Holliday junctions by yeast endonuclease: effect of DNA structure and sequence.

D. Lilley, A. Murchie, S. C. West, 1989, The EMBO journal.

The anomalous gel migration of a stable cruciform: temperature and salt dependence, and some comparisons with curved DNA.

D. Lilley, S. Diekmann, 1987, Nucleic acids research.

The global folding of four-way helical junctions in RNA, including that in U1 snRNA

D. Lilley, A. Murchie, D. R. Duckett, 1995, Cell.

The tertiary structure of the four-way DNA junction affords protection against DNase I cleavage.

D. Lilley, A. Murchie, J. Portugal, 1990, Nucleic acids research.

The interaction of four-way DNA junctions with resolving enzymes.

D. Lilley, 2010, Biochemical Society transactions.

The Holliday junction is finally seen with crystal clarity

D. Lilley, D. Norman, 1999, Nature Structural Biology.

The Cruciform Extrusion Transition in Supercoiled DNA Molecules

D. Lilley, 1987 .

The Structure and Physical Chemistry of Cruciform Structures in Supercoiled DNA

D. Lilley, 1987 .

General acid-base catalysis mediated by nucleobases in the hairpin ribozyme.

Jun Lu, Stephanie Kath-Schorr, D. Lilley, 2012, Journal of the American Chemical Society.

Two-dimensional gel electrophoresis of circular DNA topoisomers.

D. Lilley, F. Aboul-ela, R. Bowater, 1992, Methods in enzymology.

Observing the helical geometry of double-stranded DNA in solution by fluorescence resonance energy transfer.

D. Lilley, A. Murchie, R. Clegg, 1993, Proceedings of the National Academy of Sciences of the United States of America.

Active chromatin structure.

D. Lilley, 1978, Cell biology international reports.

The structure of DNA four-way junctions

D. Lilley, S. Diekmann, E. Kitzing, 1993 .

Kinking of DNA and RNA helices by bulged nucleotides observed by fluorescence resonance energy transfer.

D. Lilley, A. Murchie, R. Clegg, 1994, Proceedings of the National Academy of Sciences of the United States of America.

The Guanidine Riboswitch-A Poor Orphan No Longer.

D. Lilley, 2017, Cell chemical biology.

Fluorescence Resonance Energy Transfer Studies of Structure and Dynamics in Nucleic Acids

D. Lilley, 2012 .

The structure and folding of branched RNA analyzed by fluorescence resonance energy transfer.

D. Lilley, 2009, Methods in enzymology.

DNA supercoiling and DNA structure.

D. Lilley, 1986, Biochemical Society transactions.

Dynamics of cruciform extrusion in supercoiled DNA: use of a synthetic inverted repeat to study conformational populations.

D. Lilley, A. Markham, 1983, The EMBO journal.

Crystal Structures of Cyanine Fluorophores Stacked onto the End of Double-Stranded RNA

D. Lilley, Yanjun Liu, 2017, Biophysical journal.

University of Dundee Crystal structures of cyanine fluorophores stacked onto the end of double-stranded RNA

D. Lilley, Yanjun Liu, 2022 .

The Evolution of Ribozyme Chemistry

D. Lilley, T. J. Wilson, 2009, Science.

Crystal Structure of the VS ribozyme

Phoebe A Rice, Hao Huang, D. Lilley, 2015, Nature chemical biology.

Formation of an active site in trans by interaction of two complete Varkud Satellite ribozymes.

D. Lilley, J. Ouellet, Max Byrne, 2009, RNA.

Efficient, pH-dependent RNA ligation by the VS ribozyme in trans.

D. Lilley, Aileen C McLeod, 2004, Biochemistry.

Ribozymes and RNA Catalysis

D. Lilley, F. Eckstein, 2007 .

Catalytic mechanism and pH dependence of a methyltransferase ribozyme (MTR1) from computational enzymology

D. Lilley, D. York, T. J. Wilson, 2023, Nucleic acids research.

What's new? Scanning tunneling microscopy of DNA

D. Lilley, 1990 .

Scanning tunneling microscopy of DNA.

D. Lilley, D M Lilley, 1990, BioEssays : news and reviews in molecular, cellular and developmental biology.

PKA Type II a Holoenzyme Reveals a Combinatorial Strategy for Isoform Diversity

K. Schulten, D. Lilley, Ruobo Zhou, 2022 .

Retinoblastoma susceptibility genes contain 5' sequences with a high propensity to form guanine-tetrad structures

Alastair I.H. Murchie, David M.J. Lilley, D. Lilley, 1992, Nucleic Acids Res..

The role of RNA structure in translational regulation by L7Ae protein in archaea

D. Lilley, Lin Huang, Saira Ashraf, 2018, RNA.

Location of cyanine-3 on double-stranded DNA: importance for fluorescence resonance energy transfer studies.

D. Lilley, D. Uhrín, D. Norman, 2000, Biochemistry.

Competing B-Z and helix-coil conformational transitions in supercoiled plasmid DNA.

D. Lilley, R. Bowater, F. Aboul-ela, 1992, The Journal of biological chemistry.

Kinking of DNA and RNA by base bulges.

D. Lilley, 1995, Proceedings of the National Academy of Sciences of the United States of America.

The three‐way DNA junction is a Y‐shaped molecule in which there is no helix‐helix stacking.

D. Lilley, D. R. Duckett, D M Lilley, 1990, The EMBO journal.

Global structure of three-way DNA junctions with and without additional unpaired bases: a fluorescence resonance energy transfer analysis.

D. Lilley, A. Murchie, R. Clegg, 1997, Biochemistry.

Folding and catalysis by the VS ribozyme.

D. Lilley, D. Norman, D. Lafontaine, 2002, Biochimie.

The Varkud satellite ribozyme.

D. Lilley, 2004, RNA.

A nomenclature of junctions and branchpoints in nucleic acids.

N. Seeman, D. Lilley, R. Clegg, 1995, Nucleic acids research.

Structural perspectives

D. Lilley, 1994, Nature.

The Ribosome Functions as a Ribozyme

D. Lilley, 2001, Chembiochem : a European journal of chemical biology.

RNA folding and misfolding of the hammerhead ribozyme.

D. Lilley, A. Murchie, N. Møllegaard, 1999, Biochemistry.

The ion-induced folding of the hammerhead ribozyme: core sequence changes that perturb folding into the active conformation.

D. Lilley, A. Murchie, G. Bassi, 1996, RNA.

Biochemical and Structural Properties of Fungal Holliday Junction-Resolving Enzymes.

D. Lilley, A. Gartner, Yanjun Liu, 2018, Methods in enzymology.

Binding of the junction-resolving enzyme bacteriophage T7 endonuclease I to DNA: separation of binding and catalysis by mutation.

D. Lilley, D. R. Duckett, M. Panis, 1995, Journal of molecular biology.

Near-simultaneous DNA cleavage by the subunits of the junction-resolving enzyme T 4 endonuclease VII and Lilley , 1996 ) , the enzymes bind to the four

D. Lilley, 2013 .

Effect of additional unpaired bases on the stability of three-way DNA junctions studied by fluorescence techniques.

D. Lilley, R. Clegg, F. Stühmeier, 1997, Biochemistry.

Nucleic Acids Research

J. K. Walker, D. Lilley, J. Hacia, 2010, Nucleic Acids Research.

Nucleic Acids and Molecular Biology 4

D. Lilley, F. Eckstein, 1990, Nucleic acids and molecular biology.

The Solution Structural Ensembles of RNA Kink-turn Motifs and Their Protein Complexes

D. Lilley, D. Herschlag, P. Harbury, 2015, Nature chemical biology.

Two inequivalent folding isomers of the three-way DNA junction with unpaired bases: sequence-dependence of the folded conformation.

D. Lilley, F. Walter, J B Welch, 1995, Journal of molecular biology.

Cisplatin adducts in DNA: distortion and recognition

D. Lilley, D. M. J. Lilley, 1996, JBIC Journal of Biological Inorganic Chemistry.

Localized chemical hyperreactivity in supercoiled DNA: evidence for base unpairing in sequences that induce low-salt cruciform extrusion.

D. Lilley, A. Murchie, K. Sullivan, 1989, Biochemistry.

Structure of the standard kink turn HmKt-7 variant A2bm6A.

D. Lilley, Lin Huang, Saira Ashraf, 2019 .

The kink-turn in the structural biology of RNA

D. Lilley, Lin Huang, 2018, Quarterly Reviews of Biophysics.

The Novel Chemical Mechanism of the Twister Ribozyme.

D. Lilley, Yanjun Liu, T. J. Wilson, 2016, Journal of the American Chemical Society.

Importance of specific nucleotides in the folding of the natural form of the hairpin ribozyme.

D. Lilley, T. J. Wilson, Zheng-yun Zhao, 2001, Biochemistry.

The Guanidine Riboswitch-A Poor Orphan No Longer.

D. Lilley, 2017, Cell chemical biology.

Novel Ligands for a Purine Riboswitch Discovered by RNA-Ligand Docking

D. Lilley, R. Brenk, R. Batey, 2011, Chemistry & biology.

Biochemical systems analysis: A study of function and design in molecular biology Michael A. Savageau Addison-Wesley (1977) London. Hardback E21.30 Paperback E13.20

D. Lilley, David M.J. Lilley, 1978 .

Chemical synthesis and cloning of a gene for human beta-urogastrone.

D. Lilley, I. Fotheringham, H. Lewis, 1982, Nucleic acids research.

Holliday junction‐resolving enzymes—structures and mechanisms

D. Lilley, 2017, FEBS letters.

Four-Way Helical Junctions in DNA Molecules

D. Lilley, 2009 .

The complete VS ribozyme in solution studied by small-angle X-ray scattering.

D. Lilley, S. Doniach, J. Ouellet, 2008, Structure.

The structure and properties of histone F2a comprising the heterologous group F2a1 and F2a2 studied by 13C nuclear magnetic resonance.

D. Lilley, B. Richards, O. Howarth, 1974, Nucleic Acids Research.

The existence of random coil N‐terminal peptides — ‘tails’ — in native histone complexes

D. Lilley, O. Howarth, V. M. Clark, 1976, FEBS letters.

THE SUB-STRUCTURE OF NUCLEOSOME CORE PARTICLES

D. Lilley, B. Richards, D. Worcester, 1978 .

In vivo consequences of plasmid topology

D. Lilley, 1981, Nature.

Gel electrophoresis and the structure of RNA molecules.

D. Lilley, A. Bhattacharyya, S. McAteer, 1992, Biotechnology & genetic engineering reviews.

The structure of cyanine 5 terminally attached to double-stranded DNA: implications for FRET studies.

D. Lilley, A. Iqbal, D. Norman, 2008, Biochemistry.

The plasticity of a structural motif in RNA: structural polymorphism of a kink turn as a function of its environment.

Peter Daldrop, D. Lilley, P. Daldrop, 2013, RNA.

The four-way DNA junction: a fluorescence resonance energy transfer study.

D. Lilley, A. Murchie, R. Clegg, 1993, Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologicas.