J. Antosiewicz

发表

Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian dynamics program

L. R. Scott, J. Madura, M. Gilson, 1995 .

The determinants of pKas in proteins.

M. Gilson, J. Antosiewicz, J. Mccammon, 1996, Biochemistry.

Computing ionization states of proteins with a detailed charge model

M. Gilson, A. Elcock, J. Briggs, 1996, J. Comput. Chem..

Thermodynamic linkage between the binding of protons and inhibitors to HIV‐1 protease

Joanna Trylska, Jan Antosiewicz, Maciej Geller, 2008, Protein science : a publication of the Protein Society.

Prediction of pH-dependent properties of proteins.

M. Gilson, J. Antosiewicz, J. Mccammon, 1994, Journal of molecular biology.

Empirical relationships between protein structure and carboxyl pKa values in proteins

J. Antosiewicz, A. D. Robertson, W. R. Forsyth, 2002, Proteins.

Charge-charge interactions are key determinants of the pK values of ionizable groups in ribonuclease Sa (pI=3.5) and a basic variant (pI=10.2).

David Schell, Kevin L. Shaw, D. Laurents, 2003, Journal of molecular biology.

Prediction of titration properties of structures of a protein derived from molecular dynamics trajectories

J. Antosiewicz, J. Mccammon, S. Wlodek, 1997, Protein science : a publication of the Protein Society.

Theoretical and experimental analysis of ionization equilibria in ovomucoid third domain.

M K Gilson, M. Gilson, J. Antosiewicz, 1998, Biochemistry.

UV–Vis spectroscopy of tyrosine side-groups in studies of protein structure. Part 1: basic principles and properties of tyrosine chromophore

J. Antosiewicz, D. Shugar, 2016, Biophysical Reviews.

Anisotropic Diffusion Effects on the Barnase-Barstar Encounter Kinetics.

J. Antosiewicz, M. Długosz, 2013, Journal of chemical theory and computation.

Toward an Accurate Modeling of Hydrodynamic Effects on the Translational and Rotational Dynamics of Biomolecules in Many-Body Systems.

J. Antosiewicz, M. Długosz, 2015, The journal of physical chemistry. B.

Effect of aminoacylation on tRNA conformation

J. Antosiewicz, D. Porschke, 2004, European Biophysics Journal.

Electrostatics of hemoglobins from measurements of the electric dichroism and computer simulations.

J. Antosiewicz, D. Porschke, 1995, Biophysical journal.

The Determinants of p K as in Proteins †

M. Gilson, J. Antosiewicz, J. Mccammon, 2022 .

Poisson-Boltzmann model analysis of binding mRNA cap analogues to the translation initiation factor eIF4E.

Oliwia M. Szklarczyk, J. Antosiewicz, J. Zuberek, 2009, Biophysical chemistry.

Circular Dichroism Spectra of α-Chymotrypsin–SDS Solutions Depend on the Procedure of Their Preparation

J. Antosiewicz, M. Długosz, Karolina Stachurska, 2022, ACS omega.

ON THE MECHANISM OF ACETYLCHOLINESTERASE ACTION : THE ELECTROSTATICALLY INDUCED ACCELERATION OF THE CATALYTIC ACYLATION STEP

J. Briggs, J. Antosiewicz, S. Wlodek, 1997 .

Volume correction for bead model simulations of rotational friction coefficients of macromolecules.

J. Antosiewicz, D. Porschke, 1989 .

Hydration of alcohols by ultrasonic velocity measurements in ternary systems

J. Antosiewicz, D. Shugar, 1984 .

Hydration of alcohols in aqueous methanol solutions from ultrasonic velocity measurements

J. Antosiewicz, D. Shugar, 1983 .

Binding of tacrine and 6-chlorotacrine by acetylcholinesterase.

T. Straatsma, M. Gilson, J. Briggs, 1996, Biopolymers.

Structure of the Tet repressor and Tet repressor-operator complexes in solution from electrooptical measurements and hydrodynamic simulations.

J. Antosiewicz, K. Tovar, D. Porschke, 1988, Biochemistry.

Stopped-flow and Brownian dynamics studies of electrostatic effects in the kinetics of binding of 7-methyl-GpppG to the protein eIF4E

J. Antosiewicz, A. Niedzwiecka, J. Stȩpiński, 2000, European Biophysics Journal.

8-Azapurines as isosteric purine fluorescent probes for nucleic acid and enzymatic research.

J. Antosiewicz, D. Shugar, J. Wierzchowski, 2014, Molecular bioSystems.

pK values of histidine residues in ribonuclease Sa: effect of salt and net charge.

Michael D. Daily, J. Briggs, J. Antosiewicz, 2003, Journal of molecular biology.

Constant-pH molecular dynamics simulations: a test case of succinic acid

J. Antosiewicz, M. Długosz, 2004 .

Quasichemical interpretation of the ultrasonic velocity in ternary aqueous systems

J. Antosiewicz, M. Zółkiewski, H. Høiland, 1987 .

Dependence of ultrasonic velocity on structure in a homologous series of nonelectrolytes in aqueous medium

J. Antosiewicz, D. Shugar, 1983 .

Effects of pH on kinetics of binding of mRNA-cap analogs by translation initiation factor eIF4E

J. Antosiewicz, E. Darżynkiewicz, M. Długosz, 2003, European Biophysics Journal.

Effective screening of Coulomb repulsions in water accelerates reactions of like-charged compounds by orders of magnitude

J. Antosiewicz, W. Huck, P. Żuk, 2022, Nature Communications.

UV–Vis spectroscopy of tyrosine side-groups in studies of protein structure. Part 2: selected applications

J. Antosiewicz, D. Shugar, 2016, Biophysical Reviews.

BROWNIAN DYNAMICS SIMULATION OF ELECTROOPTICAL TRANSIENTS FOR SOLUTIONS OF RIGID MACROMOLECULES

J. Antosiewicz, D. Porschke, T. Grycuk, 1991 .

Ultrasonic studies on hydration of pyrimidine nucleosides in aqueous ethanolic solutions

J. Antosiewicz, D. Shugar, A. Juszkiewicz, 1982 .

Biophysical approach to studies of cap-eIF4E interaction by synthetic cap analogs.

J. Antosiewicz, A. Niedzwiecka, J. Stȩpiński, 2007, Methods in enzymology.

Prediction of pKas of Titratable Residues in Proteins Using a Poisson-Boltzmann Model of the Solute-Solvent System

J. Andrew McCammon, James M. Briggs, Jan M. Antosiewicz, 1999, Computational Molecular Dynamics.

Effects of Hydrodynamic Interactions on the Near-Surface Diffusion of Spheroidal Molecules

J. Antosiewicz, M. Długosz, Paweł Czajka, 2019, ACS omega.

Acetylcholinesterase: diffusional encounter rate constants for dumbbell models of ligand.

M. Gilson, J. Antosiewicz, J. Mccammon, 1995, Biophysical journal.

Multiple protonation equilibria in electrostatics of protein-protein binding.

J. Antosiewicz, Z. Piłat, 2008, The journal of physical chemistry. B.

Structure and dynamics of curved DNA fragments in solution: evidence for slow modes of configurational transitions.

J. Antosiewicz, T. Hankeln, E. Schmidt, 1993 .

Computation of the dipole moments of proteins.

J. Antosiewicz, Jan M. Antosiewicz, 1995, Biophysical journal.

Brownian dynamics simulation of electrooptical transients for complex macrodipoles.

J. Antosiewicz, D. Porschke, 1993 .

Brownian dynamics of the polarization of rodlike polyelectrolytes

J. Antosiewicz, D. Porschke, T. Grycuk, 1994 .

Poisson-Boltzmann continuum-solvation models: applications to pH-dependent properties of biomolecules.

J. Antosiewicz, D. Shugar, 2011, Molecular bioSystems.

Acetylcholinesterase: role of the enzyme's charge distribution in steering charged ligands toward the active site.

J A McCammon, J. Antosiewicz, J. Mccammon, 1998, Biopolymers.

Computer Modeling of Acetylcholinesterase and Acetylcholinesterase-Ligand Complexes

L. R. Scott, M. Gilson, J. Antosiewicz, 1995 .

Binding of Cations and Protons in the Active Site of Acetylcholinesterase

M. Gilson, J. Antosiewicz, S. Wlodek, 1995 .

Acetylcholinesterase: Effects of Ionic Strength and Dimerization on the Rate Constants

M. Gilson, J. Antosiewicz, J. Mccammon, 1994 .

Constant-pH Brownian Dynamics Simulations of a Protein near a Charged Surface

J. Antosiewicz, M. Długosz, 2020, ACS omega.

Helix–coil dynamics of a Z‐helix hairpin

J. Antosiewicz, J. Van De Sande, D. Porschke, 1988, Biopolymers.

Hydrodynamic Steering in Protein Association Revisited: Surprisingly Minuscule Effects of Considerable Torques.

J. Antosiewicz, K. Kamiński, M. Długosz, 2017, The journal of physical chemistry. B.

Effects of Spatially Dependent Mobilities on the Kinetics of the Diffusion-Controlled Association Derived from the First-Passage-Time Approach.

J. Antosiewicz, M. Długosz, 2016, The journal of physical chemistry. B.

Hydrodynamic effects on the relative rotational velocity of associating proteins.

J. Antosiewicz, M. Długosz, 2013, The journal of physical chemistry. B.

Contributions of far-field hydrodynamic interactions to the kinetics of electrostatically driven molecular association.

J. Antosiewicz, J. Trylska, P. Zieliński, 2012, The journal of physical chemistry. B.

Diffusional Encounter Rate Constants for Xanthone and 2-Naphthoic Acid by Flash Photolysis Experiments and Brownian Dynamics Simulations - Substantial Effects of Polarizability of the Triplet State.

J. Antosiewicz, P. Grochowski, K. Stachurska, 2019, The journal of physical chemistry. B.

Prediction of secondary ionization of the phosphate group in phosphotyrosine peptides.

J. Antosiewicz, B. Lesyng, T. Grycuk, 2003, Biophysical journal.

Kinetics of binding the mRNA cap analogues to the translation initiation factor eIF4E under second-order reaction conditions.

J. Antosiewicz, J. Stȩpiński, E. Bojarska, 2007, Biophysical chemistry.

Poisson-Boltzmann model studies of molecular electrostatic properties of the cAMP-dependent protein kinase

J. Briggs, J. Antosiewicz, J. Mccammon, 1999, European Biophysics Journal.

Transient Effects of Excluded Volume Interactions on the Translational Diffusion of Hydrodynamically Anisotropic Molecules.

J. Antosiewicz, M. Długosz, 2014, Journal of chemical theory and computation.

Evaluation of Proteins' Rotational Diffusion Coefficients from Simulations of Their Free Brownian Motion in Volume-Occupied Environments.

J. Antosiewicz, M. Długosz, 2014, Journal of chemical theory and computation.

Towards the mechanism of trimeric purine nucleoside phosphorylases: stopped-flow studies of binding of multisubstrate analogue inhibitor - 2-amino-9-[2-(phosphonomethoxy)ethyl]-6-sulfanylpurine.

J. Antosiewicz, B. Wielgus-Kutrowska, A. Bzowska, 2007, Biophysical chemistry.

Stopped-flow studies of guanine binding by calf spleen purine nucleoside phosphorylase.

J. Antosiewicz, A. Bzowska, M. Długosz, 2005, Biophysical chemistry.

A procedure for analysis of stopped-flow transients for protein-ligand association.

J. Antosiewicz, M. Długosz, E. Bojarska, 2002, Journal of biochemical and biophysical methods.

Simulation of pH‐Dependent Properties of Proteins Using Mesoscopic Models

J. Briggs, J. Antosiewicz, 2007 .

Effects of hydrodynamic coupling on electro-optical transients.

J. Antosiewicz, D. Porschke, 2009, The journal of physical chemistry. B.

Electrostatic and hydrodynamic orientational steering effects in enzyme-substrate association.

J A McCammon, J. Antosiewicz, J. Mccammon, 1995, Biophysical journal.

Effects of solute-solvent proton exchange on polypeptide chain dynamics: a constant-pH molecular dynamics study.

J. Antosiewicz, M. Długosz, M Długosz, 2005, The journal of physical chemistry. B.

Searching for Hydrodynamic Orienting Effects in the Association of Tri-N-acetylglucosamine with Hen Egg-White Lysozyme

J. Antosiewicz, B. Wielgus-Kutrowska, Urszula Marcisz, 2021, The journal of physical chemistry. B.

Simulation of electrostatic and hydrodynamic properties of Serratia endonuclease.

J. Antosiewicz, J. Mccammon, K. Krause, 1997, Biopolymers.

Orientational steering in enzyme-substrate association: Ionic strength dependence of hydrodynamic torque effects

J. Briggs, J. Antosiewicz, J. Mccammon, 2004, European Biophysics Journal.

An unusual electrooptical effect observed for DNA fragments and its apparent relation to a permanent electric moment associated with bent DNA.

J. Antosiewicz, D. Porschke, 1989, Biophysical chemistry.

Quantitative molecular electro-optics: Macromolecular structures and their dynamics in solution.

J. Antosiewicz, D. Porschke, 2006 .

The determinants of pK(a)s in proteins

Michael K. Gilson, J. A. McCammon, M. Gilson, 1996 .

UV–Vis spectroscopy of tyrosine side-groups in studies of protein structure. Part 1: basic principles and properties of tyrosine chromophore

J. Antosiewicz, D. Shugar, 2016, Biophysical Reviews.

Does Ionic Screening Lower Activation Barriers for Conformational Transitions in Proteins?

J. Antosiewicz, M. Długosz, 2018, The journal of physical chemistry. B.

Ultrasonic Velocity Studies on Carbohydrates in Aqueous Ethanolic Solutions

J. Antosiewicz, A. Juszkiewicz, 1986 .

The nature of protein dipole moments: experimental and calculated permanent dipole of alpha-chymotrypsin.

J. Antosiewicz, D. Porschke, 1989, Biochemistry.

Simulation of charge-mutant acetylcholinesterases.

M. Gilson, J. Antosiewicz, J. Mccammon, 1995, Biochemistry.

pKa measurements from nuclear magnetic resonance for the B1 and B2 immunoglobulin G-binding domains of protein G: comparison with calculated values for nuclear magnetic resonance and X-ray structures.

M. Gilson, J. Antosiewicz, P. Alexander, 1997, Biochemistry.

pH-dependent association of proteins. The test case of monoclonal antibody HyHEL-5 and its antigen hen egg white lysozyme.

J. Antosiewicz, J. Trylska, M. Długosz, 2009, The journal of physical chemistry. B.

UV–Vis spectroscopy of tyrosine side-groups in studies of protein structure. Part 2: selected applications

J. Antosiewicz, D. Shugar, 2016, Biophysical Reviews.

HIV-1 Protease and its Inhibitors

J. Antosiewicz, J. Trylska, M. Geller, 1997 .

Constant-pH molecular dynamics study of protonation-structure relationship in a heptapeptide derived from ovomucoid third domain.

J. Antosiewicz, A. D. Robertson, Maciej Długosz, 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.

Turn of promotor DNA by cAMP receptor protein characterized by bead model simulation of rotational diffusion.

J. Antosiewicz, D. Porschke, 1988, Journal of biomolecular structure & dynamics.

Binding of tacrine and 6‐chlorotacrine by acetylcholinesterase

T. Straatsma, M. Gilson, J. Briggs, 1996 .

8-Azapurines as isosteric purine fluorescent probes for nucleic acid and enzymatic research.

J. Antosiewicz, D. Shugar, J. Wierzchowski, 2014, Molecular bioSystems.

Structures of protein-nucleic acid complexes in solution by electro-optical analysis

J. Antosiewicz, D. Porschke, 1989 .

On the possibility of the existence of orienting hydrodynamic steering effects in the kinetics of receptor–ligand association

J. Antosiewicz, 2023, European Biophysics Journal.

Effective screening of Coulomb repulsions in water accelerates reactions of like-charged compounds by orders of magnitude

J. Antosiewicz, W. Huck, P. Żuk, 2022, Nature Communications.

Editorial: Intracellular Molecular Processes Affected by pH

P. Kane, J. Antosiewicz, 2022, Frontiers in Molecular Biosciences.

Kinetics of Structural Transitions Induced by Sodium Dodecyl Sulfate in α-Chymotrypsin

J. Antosiewicz, M. Długosz, Karolina Stachurska, 2023, ACS omega.