I. André

发表

A Vast Repertoire of Dscam Binding Specificities Arises from Modular Interactions of Variable Ig Domains

D. Baker, B. Qian, S. Zipursky, 2007, Cell.

RosettaRemodel: A Generalized Framework for Flexible Backbone Protein Design

D. Baker, I. André, Po-Ssu Huang, 2011, PloS one.

Computational Design of Self-Assembling Protein Nanomaterials with Atomic Level Accuracy

D. Baker, T. Yeates, I. André, 2012, Science.

Alternate states of proteins revealed by detailed energy landscape mapping.

D. Baker, F. Dimaio, M. Tyka, 2011, Journal of molecular biology.

Determination of the Structures of Symmetric Protein Oligomers from NMR Chemical Shifts and Residual Dipolar Couplings

Oliver F. Lange, David Baker, Frank DiMaio, 2011, Journal of the American Chemical Society.

Prediction of the structure of symmetrical protein assemblies

David Baker, Philip Bradley, Ingemar André, 2007, Proceedings of the National Academy of Sciences.

Simultaneous prediction of protein folding and docking at high resolution

D. Baker, I. André, Rhiju Das, 2009, Proceedings of the National Academy of Sciences.

A Double S Shape Provides the Structural Basis for the Extraordinary Binding Specificity of Dscam Isoforms

D. Baker, D. Eisenberg, B. Qian, 2008, Cell.

Emergence of symmetry in homooligomeric biological assemblies

David Baker, Philip Bradley, Ingemar André, 2008, Proceedings of the National Academy of Sciences.

Automated determination of fibrillar structures by simultaneous model building and fiber diffraction refinement

I. André, W. Potrzebowski, 2015, Nature Methods.

Computational assessment of folding energy landscapes in heterodimeric coiled coils

I. André, S. Bjelic, 2018, Proteins.

Exploring alternate states and oligomerization preferences of coiled‐coils by de novo structure modeling

Ingemar André, Sebastian Rämisch, Robert Lizatović, 2015, Proteins.

DNA-mediated self-assembly of gold nanoparticles on protein superhelix

Tao Zhang, I. André, Zhang Tao, 2018, bioRxiv.

A thermodynamic model of protein structure evolution explains empirical amino acid rate matrices

I. André, D. Theobald, C. Norn, 2020, bioRxiv.

Residue-specific pKa determination of lysine and arginine side chains by indirect 15N and 13C NMR spectroscopy: application to apo calmodulin.

I. André, F. Mulder, S. Linse, 2007, Journal of the American Chemical Society.

Crystal Structure of Non-Structural Protein 10 from Severe Acute Respiratory Syndrome Coronavirus-2

I. André, Z. Fisher, F. Kozielski, 2020, International journal of molecular sciences.

Mapping the Ca(2+) induced structural change in calreticulin.

I. André, P. Højrup, C. Norn, 2016, Journal of proteomics.

Atomistic simulation of protein evolution reveals sequence covariation and time-dependent fluctuations of site-specific substitution rates

I. André, C. Norn, Christoffer H Norn, 2022, bioRxiv.

Wnt5a is a TLR2/4-ligand that induces tolerance in human myeloid cells

I. André, P. Björk, S. Kjellström, 2019, Communications Biology.

Assembly of Capsids from Hepatitis B Virus Core Protein Progresses through Highly Populated Intermediates in the Presence and Absence of RNA

Ryan C. Oliver, Seyed Morteza Najibi, I. André, 2020, ACS nano.

Streptococcal M protein: structural studies of the hypervariable region, free and bound to human C4BP.

I. André, A. Blom, G. Lindahl, 2006, Biochemistry.

Computational de novo design of a self-assembling peptide with predefined structure.

Ingemar André, Louise C Serpell, I. André, 2015, Journal of molecular biology.

Interactions of the Transmembrane Polymeric Rings of the Salmonella enterica Serovar Typhimurium Type III Secretion System

David Baker, David R. Goodlett, Tamir Gonen, 2010, mBio.

Secretion System Serovar Typhimurium Type III Salmonella enterica of the Interactions of the Transmembrane Polymeric Rings 2010

D. Baker, R. Pfuetzner, I. André, 2010 .

DnaK response to expression of protein mutants is dependent on translation rate and stability

I. André, S. Rämisch, S. Christensen, 2021, Communications Biology.

Orientational Ambiguity in Septin Coiled Coils and its Structural Basis.

H. Kalbitzer, I. André, J. Brandão-Neto, 2021, Journal of molecular biology.

A thermodynamic model of protein structure evolution explains empirical amino acid substitution matrices

I. André, D. Theobald, C. Norn, 2021, Protein science : a publication of the Protein Society.

A memetic algorithm enables efficient local and global all-atom protein-protein docking with backbone and sidechain flexibility

I. André, Daniel Varela, Vera Karlin, 2021, bioRxiv.

Modeling Symmetric Macromolecular Structures in Rosetta3

David Baker, Andrew Leaver-Fay, Frank DiMaio, 2011, PloS one.

The role of electrostatic interactions in calmodulin-peptide complex formation.

Sara Linse, Bo Jönsson, Ingemar André, 2004, Biophysical journal.

Salt enhances calmodulin-target interaction.

Sara Linse, Bo Jönsson, Ingemar André, 2006, Biophysical journal.

Structure prediction for CASP7 targets using extensive all‐atom refinement with Rosetta@home

Lars Malmström, David Baker, Dylan Chivian, 2007, Proteins.

Bayesian inference of protein conformational ensembles from limited structural data

Jill Trewhella, Wojciech Potrzebowski, Ingemar Andre, 2018, PLoS Comput. Biol..

Measurement of Ca2+-binding constants of proteins and presentation of the CaLigator software.

I. André, S. Linse, 2002, Analytical biochemistry.

Computational design of a leucine-rich repeat protein with a predefined geometry

Jonas Martinsson, Ingemar André, Mikael Akke, 2014, Proceedings of the National Academy of Sciences.

A Protein-Based Encapsulation System with Calcium-Controlled Cargo Loading and Detachment

I. André, A. Heck, A. Billé, 2018, Angewandte Chemie.

A Protein-Based Encapsulation System with Calcium-Controlled Cargo Loading and Detachment.

I. André, A. Heck, A. Billé, 2018, Angewandte Chemie.

A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system

David Baker, Ingemar André, Wanyin Deng, 2009, Nature Structural &Molecular Biology.

Automated de novo phasing and model building of coiled-coil proteins.

Ingemar André, Sebastian Rämisch, Robert Lizatović, 2015, Acta crystallographica. Section D, Biological crystallography.

Structure of the basal components of a bacterial transporter

I. André, C. Dunham, J. Meisner, 2012, Proceedings of the National Academy of Sciences.

A De Novo Designed Coiled-Coil Peptide with a Reversible pH-Induced Oligomerization Switch.

Ingemar André, Olof Stenström, Mikael Akke, 2016, Structure.

An ultra‐high affinity protein–protein interface displaying sequence‐robustness

I. André, M. S. Møller, S. V. Olesen, 2021, Protein science : a publication of the Protein Society.

RosettaDock in CAPRI rounds 6–12

David Baker, Ora Schueler-Furman, Chu Wang, 2007, Proteins.

ZEAL: protein structure alignment based on shape similarity

Ingemar André, Filip Ljung, I. André, 2021, Bioinform..

Computational design of protein self-assembly.

Ingemar André, Christoffer H Norn, I. André, 2016, Current opinion in structural biology.

Modeling the Structure of Helical Assemblies with Experimental Constraints in Rosetta.

I. André, 2018, Methods in molecular biology.

Thermal stability and structural changes in bacterial toxins responsible for food poisoning

Ingemar André, I. André, J. Hansen, 2017, PloS one.

The RosettaCon 2012 Special Collection: Code Writ on Water, Documentation Writ in Stone

Ingemar André, Jacob Corn, I. André, 2013, PloS one.

Amyloid β 42 fibril structure based on small-angle scattering

U. Gasser, I. André, S. Linse, 2021, Proceedings of the National Academy of Sciences.

Rosetta in CAPRI rounds 13–19

David Baker, Sarel J Fleishman, Rhiju Das, 2010, Proteins.

Accurate prediction of protein assembly structure by combining AlphaFold and symmetrical docking

I. André, Mads Jeppesen, 2023, bioRxiv.

Facile method for high-throughput identification of stabilizing mutations.

I. André, S. Christensen, Camille Wernersson, 2023, Journal of molecular biology.

Electrostatic contributions to residue-specific protonation equilibria and proton binding capacitance for a small protein.

I. André, F. Mulder, S. Lindman, 2006, Biochemistry.

Structure prediction for CASP7 targets using extensive all‐atom refinement with Rosetta@home

Andrew M Wollacott, David E. Kim, Chu Wang, 2007, Proteins.

pK(a) values for side-chain carboxyl groups of a PGB1 variant explain salt and pH-dependent stability.

I. André, F. Mulder, S. Lindman, 2007, Biophysical journal.

A De Novo Designed Coiled-Coil Peptide with a Reversible pH-Induced Oligomerization Switch.

I. André, M. Akke, D. Logan, 2016, Structure.

Computational Design of Self-Assembling Protein Nanomaterials with Atomic Level Accuracy

T. Yeates, I. André, M. Sawaya, 2012, Science.