A. Westermann

发表

Single-cell RNA-seq: advances and future challenges

A. Saliba, A. Westermann, S. Gorski, 2014, Nucleic acids research.

Dual RNA-seq of pathogen and host

A. Westermann, S. Gorski, J. Vogel, 2012, Nature Reviews Microbiology.

Triple RNA-Seq Reveals Synergy in a Human Virus-Fungus Co-infection Model.

A. Westermann, J. Vogel, H. Einsele, 2020, Cell reports.

Single-cell RNA-seq: advances and future challenges

Alexander J. Westermann, A. Saliba, A. Westermann, 2014, Nucleic acids research.

Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions

Konrad U. Förstner, Peter F. Stadler, Lars Barquist, 2016, Nature.

SPI2 T3SS effectors facilitate enterocyte apical to basolateral transmigration of Salmonella-containing vacuoles in vivo

A. Westermann, J. Vogel, J. Kalinowski, 2021, Gut microbes.

A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence

Amy K. Cain, A. Westermann, J. Vogel, 2020 .

A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence

Amy K. Cain, A. Westermann, J. Vogel, 2020, bioRxiv.

Dual RNA-seq of Orientia tsutsugamushi informs on host-pathogen interactions for this neglected intracellular human pathogen

Willow B. Kion-Crosby, A. Westermann, J. Vogel, 2020, Nature Communications.

An Advanced Human Intestinal Coculture Model Reveals Compartmentalized Host and Pathogen Strategies during Salmonella Infection

Leon N. Schulte, A. Westermann, J. Vogel, 2020, mBio.

MAPS integrates overlooked regulation of actin-targeting effector SteC into the virulence control network of Salmonella small RNA PinT

A. Westermann, J. Vogel, T. Bischler, 2020, bioRxiv.

Dual RNA-seq provides insight into the biology of the neglected intracellular human pathogen Orientia tsutsugamushi

Willow B. Kion-Crosby, A. Westermann, J. Vogel, 2019, bioRxiv.

CRP-cAMP mediates silencing of Salmonella virulence at the post-transcriptional level

A. Westermann, J. Vogel, M. Sánchez-Romero, 2018, PLoS genetics.

Regulatory RNAs in Virulence and Host-Microbe Interactions

A. Westermann, 2018, Microbiology spectrum.

Salmonella persisters undermine host immune defenses during antibiotic treatment

A. Saliba, A. Westermann, J. Vogel, 2018, Science.

Molecular phenotyping of infection-associated small non-coding RNAs

A. Westermann, J. Vogel, Lars Barquist, 2016, Philosophical Transactions of the Royal Society B: Biological Sciences.

A high-resolution transcriptome map identifies small RNA regulation of metabolism in the gut microbe Bacteroides thetaiotaomicron

A. Westermann, Lars Barquist, L. Jenniches, 2020, Nature Communications.

An RNA-centric view on gut Bacteroidetes

A. Westermann, Daniel Ryan, Gianluca Prezza, 2020, Biological chemistry.

An NK Cell Perforin Response Elicited via IL-18 Controls Mucosal Inflammation Kinetics during Salmonella Gut Infection

A. Westermann, J. Vogel, W. Hardt, 2016, PLoS pathogens.

TFEB induces mitochondrial itaconate synthesis to suppress bacterial growth in macrophages

Joerg M. Buescher, A. Ballabio, A. Westermann, 2022, Nature Metabolism.

Amidochelocardin Overcomes Resistance Mechanisms Exerted on Tetracyclines and Natural Chelocardin

H. Petković, A. Westermann, J. Vogel, 2020, Antibiotics.

The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium

Konrad U. Förstner, A. Westermann, J. Vogel, 2019, mBio.

Polypyrimidine tract-binding protein homologues from Arabidopsis underlie regulatory circuits based on alternative splicing and downstream control.

A. Westermann, A. Wachter, G. Wagner, 2010, The Plant journal : for cell and molecular biology.

Transgene regulation in plants by alternative splicing of a suicide exon

Scott F. Hickey, A. Westermann, M. C. Hammond, 2012, Nucleic acids research.

Cross-species RNA-seq for deciphering host–microbe interactions

A. Westermann, J. Vogel, 2021, Nature Reviews Genetics.

Improved bacterial RNA-seq by Cas9-based depletion of ribosomal RNA reads

A. Westermann, J. Vogel, Sascha Dietrich, 2020, RNA.

Resolving host–pathogen interactions by dual RNA-seq

Lars Barquist, Jörg Vogel, Alexander J Westermann, 2017, PLoS pathogens.

Single-cell RNA-seq ties macrophage polarization to growth rate of intracellular Salmonella

Leon N. Schulte, A. Saliba, A. Westermann, 2016, Nature Microbiology.

RNA target profiles direct the discovery of virulence functions for the cold-shock proteins CspC and CspE

A. Westermann, J. Vogel, M. Sharan, 2017, Proceedings of the National Academy of Sciences.

Regulatory RNAs in Virulence and Host-Microbe Interactions

A. Westermann, 2018, Regulating with RNA in Bacteria and Archaea.

An integrated transcriptomics–functional genomics approach reveals a small RNA that modulates Bacteroides thetaiotaomicron sensitivity to tetracyclines

Regan J. Hayward, A. Westermann, A. Deutschbauer, 2023, bioRxiv.

The ambivalent role of Bacteroides in enteric infections.

A. Westermann, Elise Bornet, 2021, Trends in microbiology.

Host-Pathogen Transcriptomics by Dual RNA-Seq.

A. Westermann, J. Vogel, 2018, Methods in molecular biology.

Induced Pluripotent Stem Cell-Derived Brain Endothelial Cells as a Cellular Model to Study Neisseria meningitidis Infection

A. Westermann, K. Ohlsen, K. Förstner, 2019, Front. Microbiol..

Differential activation and functional specialization of miR-146 and miR-155 in innate immune sensing

Leon N. Schulte, A. Westermann, J. Vogel, 2012, Nucleic acids research.

RNA recording in single bacterial cells using reprogrammed tracrRNAs

Chase L. Beisel, A. Westermann, J. Vogel, 2023, Nature Biotechnology.

Comparative genomics provides structural and functional insights into Bacteroides RNA biology

A. Westermann, Lars Barquist, Daniel Ryan, 2021, Molecular microbiology.

MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data

Fabian J Theis, L M Simon, S Karg, 2018, bioRxiv.

A primary cell-based in vitro model of the human small intestine reveals host olfactomedin 4 induction in response to Salmonella Typhimurium infection

A. Saliba, A. Westermann, J. Vogel, 2023, Gut microbes.

MAPS integrates regulation of actin-targeting effector SteC into the virulence control network of Salmonella small RNA PinT.

A. Westermann, J. Vogel, T. Bischler, 2021, Cell reports.

Toward Cell Type-Specific In Vivo Dual RNA-Seq.

Denise N. Bronner, A. Westermann, B. McLaughlin, 2018, Methods in enzymology.

Improved RNA stability estimation through Bayesian modeling reveals most 1 bacterial transcripts have sub-minute half-lives 2

A. Westermann, J. Vogel, Lars Barquist, 2023 .

Polypyrimidine tract-binding protein homologues from Arabidopsis underlie regulatory circuits based on alternative splicing and downstream control.

A. Westermann, A. Wachter, G. Wagner, 2010, The Plant journal : for cell and molecular biology.

Non-professional efferocytosis of Salmonella-infected intestinal epithelial cells in the neonatal host

Konrad U. Förstner, A. Westermann, Kaiyi Zhang, 2024, The Journal of experimental medicine.

Improved RNA stability estimation through Bayesian modeling reveals most Salmonella transcripts have subminute half-lives

A. Westermann, Lars Barquist, Charlotte Michaux, 2024, bioRxiv.