I. Meyer

发表

Gene structure conservation aids similarity based gene prediction.

Irmtraud M. Meyer, R. Durbin, I. Meyer, 2004, Nucleic acids research.

Moments of the Boltzmann distribution for RNA secondary structures

Irmtraud M. Meyer, I. Meyer, I. Miklós, 2005, Bulletin of mathematical biology.

Frequent mutation of histone modifying genes in non-Hodgkin lymphoma

Steven J. M. Jones, Shaun D. Jackman, Ryan D. Morin, 2011, Nature.

An evolutionary model for protein-coding regions with conserved RNA structure.

Irmtraud M. Meyer, J. S. Pedersen, J. Hein, 2004, Molecular biology and evolution.

A comparative method for finding and folding RNA secondary structures within protein-coding regions.

Irmtraud M. Meyer, J. S. Pedersen, J. Hein, 2004, Nucleic acids research.

Comparative ab initio prediction of gene structures using pair HMMs

Richard Durbin, Irmtraud M. Meyer, R. Durbin, 2002, Bioinform..

CoBold: a method for identifying different functional classes of transient RNA structure features that can impact RNA structure formation in vivo

Irmtraud M. Meyer, I. Meyer, A. Martín, 2020, Nucleic acids research.

In silico methods for co-transcriptional RNA secondary structure prediction and for investigating alternative RNA structure expression.

Irmtraud M. Meyer, Irmtraud M Meyer, I. Meyer, 2017, Methods.

The clonal and mutational evolution spectrum of primary triple-negative breast cancers

Irmtraud M. Meyer, A. Bashashati, I. Birol, 2012, Nature.

Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing

Alborz Mazloomian, Irmtraud M. Meyer, Irmtraud M Meyer, 2015, RNA biology.

The International Virus Bioinformatics Meeting 2020

Irmtraud M. Meyer, I. Meyer, N. Beerenwinkel, 2020, Viruses.

BIQ: A method for searching circular RNAs in transcriptome databases by indexing backsplice junctions

Irmtraud M. Meyer, I. Meyer, P. Menzel, 2019, bioRxiv.

Applications of High-Throughput Sequencing

Irmtraud M. Meyer, I. Meyer, M. Marra, 2012 .

On the importance of cotranscriptional RNA structure formation

Irmtraud M. Meyer, I. Meyer, Daniel Lai, 2013, RNA.

HMMConverter 1.0: a toolbox for hidden Markov models

Irmtraud M. Meyer, Tin Yin Lam, I. Meyer, 2009, Nucleic acids research.

R-chie: a web server and R package for visualizing RNA secondary structures

Daniel Lai, Irmtraud M. Meyer, I. Meyer, 2012, Nucleic acids research.

A comprehensive comparison of general RNA–RNA interaction prediction methods

Daniel Lai, Irmtraud M. Meyer, Irmtraud M Meyer, 2015, Nucleic acids research.

R-chie: a web server and R package for visualizing cis and trans RNA–RNA, RNA–DNA and DNA–DNA interactions

Irmtraud M. Meyer, I. Meyer, Mohamed Mounir, 2020, Nucleic acids research.

CoFold: thermodynamic RNA structure prediction with a kinetic twist

Irmtraud M. Meyer, I. Meyer, J. R. Proctor, 2012, 1207.6013.

Efficient parameter training for hidden Markov models using posterior sampling training and Viterbi training

I. Meyer, T. Y. Lam, 2009, ArXiv.

Transcriptional dynamics of microRNAs and their targets during Drosophila neurogenesis

Irmtraud M. Meyer, I. Meyer, R. Zinzen, 2019, RNA biology.

The dynamic proteome of influenza A virus infection identifies M segment splicing as a host range determinant

Irmtraud M. Meyer, I. Meyer, M. Selbach, 2018, Nature Communications.

Women in the European Virus Bioinformatics Center

Irmtraud M. Meyer, I. Meyer, K. Metzner, 2022, Viruses.

A cross-species comparison of X-chromosome inactivation in Eutheria.

Irmtraud M. Meyer, Carolyn J. Brown, I. Meyer, 2007, Genomics.

Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis

Irmtraud M. Meyer, I. Meyer, D. Staiger, 2008, Nucleic acids research.

Four RNA families with functional transient structures

Irmtraud M. Meyer, I. Meyer, J. Zhu, 2015, RNA biology.

The genome of the simian and human malaria parasite Plasmodium knowlesi

Karsten M. Borgwardt, Thomas M. Keane, Irmtraud M. Meyer, 2008, Nature.

Deciphering the Universe of RNA Structures and trans RNA–RNA Interactions of Transcriptomes In Vivo: From Experimental Protocols to Computational Analyses

Irmtraud M. Meyer, Stefan R. Stefanov, I. Meyer, 2018 .

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs

Irmtraud M. Meyer, Chinmay J. Shukla, Manolis Kellis, 2018, Development.

Title A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs . Running title lncRNAs in Drosophila neurogenesis

Irmtraud M. Meyer, Chinmay J. Shukla, Manolis Kellis, 2018 .

CYCLeR—a novel tool for the full isoform assembly and quantification of circRNAs

Irmtraud M. Meyer, I. Meyer, Stefan R. Stefanov, 2021, bioRxiv.

A practical guide to the art of RNA gene prediction

Irmtraud M. Meyer, I. Meyer, 2007, Briefings Bioinform..

Transat—A Method for Detecting the Conserved Helices of Functional RNA Structures, Including Transient, Pseudo-Knotted and Alternative Structures

Irmtraud M. Meyer, Nicholas J. P. Wiebe, I. Meyer, 2010, PLoS Comput. Biol..

Transient RNA structure features are evolutionarily conserved and can be computationally predicted

Irmtraud M. Meyer, I. Meyer, A. Steif, 2013, Nucleic acids research.

CoFold: an RNA secondary structure prediction method that takes co-transcriptional folding into account

Irmtraud M. Meyer, I. Meyer, Jeff R. Proctor, 2013, Nucleic acids research.

The hok mRNA family

Irmtraud M. Meyer, Irmtraud M Meyer, I. Meyer, 2012, RNA biology.

ShapeSorter: a fully probabilistic method for detecting conserved RNA structure features supported by SHAPE evidence

Irmtraud M. Meyer, I. Meyer, V. Tsybulskyi, 2022, Nucleic acids research.

Co-transcriptional folding is encoded within RNA genes

István Miklós, Irmtraud M Meyer, I. Meyer, 2004, BMC Molecular Biology.

Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs

István Miklós, Irmtraud M. Meyer, I. Meyer, 2005, Nucleic acids research.

SimulFold: Simultaneously Inferring RNA Structures Including Pseudoknots, Alignments, and Trees Using a Bayesian MCMC Framework

István Miklós, Irmtraud M. Meyer, Irmtraud M Meyer, 2007, PLoS Comput. Biol..

Investigating the concept of accessibility for predicting novel RNA-RNA interactions

Irmtraud M. Meyer, I. Meyer, S. Reißer, 2021, bioRxiv.

Predicting novel RNA-RNA interactions.

Irmtraud M. Meyer, Irmtraud M Meyer, I. Meyer, 2008, Current opinion in structural biology.

Reproductive toxicology. Dibromochloropropane.

I. Meyer, I. Miklós, 1997, Environmental health perspectives.