S. Hooper

发表

Proteome survey reveals modularity of the yeast cell machinery

P. Bork, G. Casari, L. Jensen, 2006, Nature.

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

Natalia N. Ivanova, Lynne A. Goodwin, P. D’haeseleer, 2009, Nature.

Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis

P. Bork, K. White, L. Jensen, 2007, Molecular systems biology.

Systematic Association of Genes to Phenotypes by Genome and Literature Mining

Peer Bork, Carolina Perez-Iratxeta, Lars J Jensen, 2005, PLoS biology.

The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota

Luke E. Ulrich, N. Kyrpides, C. Woese, 2009, BMC Genomics.

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

Natalia N. Ivanova, N. Kyrpides, S. Hooper, 2010, Nature Methods.

Environments shape the nucleotide composition of genomes

P. Bork, S. Hooper, C. von Mering, 2005, EMBO reports.

Genome-wide profiling of genetic synthetic lethality identifies CDK12 as a novel determinant of PARP1/2 inhibitor sensitivity.

Alan Ashworth, James Campbell, Kerry Fenwick, 2014, Cancer research.

Detection of Genes with Atypical Nucleotide Sequence in Microbial Genomes

Sean D. Hooper, S. Hooper, O. Berg, 2002, Journal of Molecular Evolution.

Gene Import or Deletion: A Study of the Different Genes in Escherichia coli Strains K12 and O157:H7

S. Hooper, O. Berg, 2002, Journal of Molecular Evolution.

Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach

N. Kyrpides, S. Hooper, I. Anderson, 2009, Nucleic acids research.

A Molecular Study of Microbe Transfer between Distant Environments

P. Bork, J. Raes, S. Hooper, 2008, PloS one.

Systems biology jClust : a clustering and visualization toolbox

Charalampos N. Moschopoulos, S. Hooper, Reinhard Schneider, 2009 .

Sequence based analysis of U-2973, a cell line established from a double-hit B-cell lymphoma with concurrent MYC and BCL2 rearrangements

S. Hooper, T. Sjöblom, L. Cavelier, 2012, BMC Research Notes.

Focus: Synergistetes.

N. Kyrpides, S. Hooper, P. Hugenholtz, 2009, Environmental microbiology.

Next generation RNA‐sequencing in prognostic subsets of chronic lymphocytic leukemia

Anders Isaksson, Ulf Gyllensten, Gunnar Juliusson, 2012, American journal of hematology.

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

Jonathan A. Eisen, Natalia N. Ivanova, P. D’haeseleer, 2009, Nature.

The Complete Multipartite Genome Sequence of Cupriavidus necator JMP134, a Versatile Pollutant Degrader

Natalia N. Ivanova, N. Kyrpides, S. Hooper, 2010, PloS one.

Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii

Sean D. Hooper, Natalia Ivanova, Athanasios Lykidis, 2009, PloS one.

Novel Insights into the Diversity of Catabolic Metabolism from Ten Haloarchaeal Genomes

Natalia N. Ivanova, N. Kyrpides, S. Hooper, 2011, PloS one.

On the nature of gene innovation: duplication patterns in microbial genomes.

Sean D Hooper, S. Hooper, O. Berg, 2003, Molecular biology and evolution.

STRING: known and predicted protein–protein associations, integrated and transferred across organisms

Christian von Mering, Peer Bork, Sean D. Hooper, 2004, Nucleic Acids Res..

Genome-wide sequencing for the identification of rearrangements associated with Tourette syndrome and obsessive-compulsive disorder

L. Feuk, S. Hooper, L. Cavelier, 2012, BMC Medical Genetics.

Microbial co-habitation and lateral gene transfer: what transposases can tell us

Konstantinos Mavromatis, Nikos C Kyrpides, Sean D Hooper, 2009, Genome Biology.

Estimating DNA coverage and abundance in metagenomes using a gamma approximation

Sean D. Hooper, Natalia Ivanova, Nikos Kyrpides, 2009, Bioinform..

Gradients in nucleotide and codon usage along Escherichia coli genes.

S. Hooper, O. Berg, O G Berg, 2000, Nucleic acids research.

jClust: a clustering and visualization toolbox

Reinhard Schneider, Georgios A. Pavlopoulos, Charalampos N. Moschopoulos, 2009, Bioinform..

Duplication is more common among laterally transferred genes than among indigenous genes

S. Hooper, O. Berg, 2003, Genome Biology.

Annotation of metagenome short reads using proxygenes

Sean D. Hooper, Natalia Ivanova, Victor M. Markowitz, 2008, ECCB.

Medusa: a simple tool for interaction graph analysis

Peer Bork, Sean D. Hooper, P. Bork, 2005, Bioinform..

Gene rearrangements in hormone receptor negative breast cancers revealed by mate pair sequencing

S. Hooper, T. Sjöblom, F. Wärnberg, 2013, BMC Genomics.

Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens

Sean D. Hooper, Nikos Kyrpides, Dwi Susanti, 2009, PloS one.

Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System

Sean D. Hooper, Victor M. Markowitz, Ken Chu, 2009, PloS one.

Gene rearrangements in hormone receptor negative breast cancers revealed by mate pair sequencing

S. Hooper, T. Sjöblom, F. Wärnberg, 2013, BMC Genomics.

Medusa: A tool for exploring and clustering biological networks

Reinhard Schneider, Jan Aerts, Alejandro Sifrim, 2011, BMC Research Notes.

Structural Alterations from Multiple Displacement Amplification of a Human Genome Revealed by Mate-Pair Sequencing

Sean D. Hooper, Yutao Fu, Tobias Sjöblom, 2011, PloS one.

Genome-wide profiling of genetic synthetic lethality identifies CDK12 as a novel determinant of PARP1/2 inhibitor sensitivity.

A. Ashworth, S. Hooper, R. Natrajan, 2014, Cancer research.

OnTheFly: a tool for automated document-based text annotation, data linking and network generation

Reinhard Schneider, Georgios A. Pavlopoulos, Sean D. Hooper, 2009, Bioinform..

Focus: Synergistetes.

N. Kyrpides, S. Hooper, P. Hugenholtz, 2009, Environmental microbiology.