F. Hamey

发表

PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

Fabian J Theis, Mireya Plass, Jordi Solana, 2019, Genome Biology.

A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation.

Nicola K. Wilson, F. Hamey, B. Göttgens, 2016, Blood.

Network-smoothing based imputation for netSmooth : single cell RNA-seq

F. Hamey, 2018 .

Machine learning predicts putative hematopoietic stem cells within large single-cell transcriptomics data sets

F. Hamey, B. Göttgens, 2019, Experimental hematology.

Charting the single-cell transcriptional landscape of haematopoiesis

F. Hamey, 2019 .

A single-cell hematopoietic landscape resolves 8 lineage trajectories and defects in Kit mutant mice.

Samuel L. Wolock, Joakim S. Dahlin, Nicola K. Wilson, 2018, Blood.

Heterogeneity of human lympho-myeloid progenitors at the single cell level

F. Hamey, B. Göttgens, A. Reinisch, 2017, Nature Immunology.

Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells

S. Teichmann, F. Hamey, I. Macaulay, 2016, Cell reports.

Single‐cell molecular profiling provides a high‐resolution map of basophil and mast cell development

Joakim S. Dahlin, Nicola K. Wilson, F. Hamey, 2020, Allergy.

Heterogeneity of human lympho-myeloid progenitors at the single cell level

F. Hamey, A. Reinisch, P. Vyas, 2018 .

Reconstructing Gene Regulatory Networks That Control Hematopoietic Commitment.

F. Hamey, B. Göttgens, 2019, Methods in molecular biology.

Mbd3/NuRD controls lymphoid cell fate and inhibits tumorigenesis by repressing a B cell transcriptional program

F. Hamey, B. Göttgens, Alice Giustacchini, 2017, The Journal of experimental medicine.

Discrimination of Dormant and Active Hematopoietic Stem Cells by G0 Marker Reveals Dormancy Regulation by Cytoplasmic Calcium.

F. Hamey, B. Göttgens, Yosuke Tanaka, 2019, Cell reports.

Single-cell multi-omics analysis reveals IFN-driven alterations in T lymphocytes and natural killer cells in systemic lupus erythematosus.

J. Todd, F. Hamey, R. Ferreira, 2022, Wellcome open research.

PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

Fabian J. Theis, Berthold Göttgens, Fabian J Theis, 2017, Genome Biology.

Single-cell molecular profiling provides a high-resolution map of basophil and mast cell differentiation

Joakim S. Dahlin, Nicola K. Wilson, F. Hamey, 2019, bioRxiv.

Low-dose IL-2 reduces IL-21+ T cells and induces a long-lived anti-inflammatory gene expression signature inversely modulated in COVID-19 patients

J. Todd, F. Hamey, M. Pekalski, 2022, medRxiv.

PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

Fabian J Theis, Mireya Plass, Jordi Solana, 2019, Genome biology.

Sorting apples from oranges in single-cell expression comparisons

F. Hamey, B. Göttgens, 2018, Nature Methods.

Differentiation of transplanted haematopoietic stem cells tracked by single-cell transcriptomic analysis

F. Hamey, B. Göttgens, F. Tang, 2020, Nature Cell Biology.

Single-cell multi-omics analysis reveals IFN-driven alterations in T lymphocytes and natural killer cells in systemic lupus erythematosus

J. Todd, F. Hamey, R. Ferreira, 2021, medRxiv.

Hematopoietic stem cells retain functional potential and molecular identity in hibernation cultures

F. Hamey, B. Göttgens, E. Diamanti, 2021, Stem cell reports.

FisHiCal: an R package for iterative FISH-based calibration of Hi-C data

Pietro Liò, Yoli Shavit, Fiona Kathryn Hamey, 2014, Bioinform..

A NOVEL MODEL OF HUMAN LYMPHO-MYELOID PROGENITOR HIERARCHY BASED ON SINGLE CELL FUNCTIONAL AND TRANSCRIPTIONAL ANALYSIS

F. Hamey, B. Göttgens, A. Reinisch, 2017 .

Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization

Ari Pekka Mähönen, Charles W. Melnyk, D. Shasha, 2021, Science.

Heterogeneity of human lympho-myeloid progenitors at the single cell level

F. Hamey, B. Göttgens, A. Reinisch, 2017, Nature Immunology.

Reconstructing blood stem cell regulatory network models from single-cell molecular profiles

Berthold Göttgens, David G Kent, Nicola K. Wilson, 2017, Proceedings of the National Academy of Sciences.

Analysis of phloem trajectory links tissue maturation to cell specialization

Ari Pekka Mähönen, Charles W. Melnyk, D. Shasha, 2021, bioRxiv.

Single-cell multi-omics analysis reveals IFN-driven alterations in T lymphocytes and natural killer cells in systemic lupus erythematosus [version 1; peer review: 1 approved, 2 approved with reservations]

J. Todd, F. Hamey, R. Ferreira, 2022 .

Advancing haematopoietic stem and progenitor cell biology through single‐cell profiling

Berthold Göttgens, Nicola K. Wilson, F. Hamey, 2016, FEBS letters.

Neogenin-1: A new receptor critical for hematopoietic stem cell function

F. Hamey, B. Göttgens, L. Bystrykh, 2017 .

Demystifying blood stem cell fates

F. Hamey, B. Göttgens, 2017, Nature Cell Biology.

Graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

Fabian J Theis, Joakim S. Dahlin, Jordi Solana, 2017, bioRxiv.

A Single Cell Haematopoietic Landscape Resolves Eight Lineage Trajectories and Defects in Kit Mutant Mice

Fabian J. Theis, Berthold Göttgens, Fabian J Theis, 2018, Experimental Hematology.

Automated Detection of Fluorescent Probes in Molecular Imaging

Pietro Liò, Christopher Town, Yoli Shavit, 2014, CIBB.

PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

Fabian J Theis, Joakim S. Dahlin, Jordi Solana, 2019, Genome Biology.