J. Petrosino

Shital Patel, Kjersti Aagaard, James Versalovic, 2013, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy

Aleksandar Milosavljevic, Cristian Coarfa, Curtis Huttenhower, 2012, PloS one.

Microbial Reconstitution Reverses Maternal Diet-Induced Social and Synaptic Deficits in Offspring

Gonzalo Viana Di Prisco, G. V. Prisco, N. Ajami, 2016, Cell.

The microbiome in precision medicine: the way forward

J. Petrosino, Joseph F. Petrosino, 2018, Genome Medicine.

Microbiome for Mars: surveying microbiome connections to healthcare with implications for long-duration human spaceflight, virtual workshop, July 13, 2020

S. L. Mayo, R. Knight, J. Petrosino, 2021, Microbiome.

SMRT Sequencing of Paramecium Bursaria Chlorella Virus-1 Reveals Diverse Methylation Stability in Adenines Targeted by Restriction Modification Systems

J. V. Van Etten, N. Ajami, J. Petrosino, 2020, Frontiers in Microbiology.

Fecal microbiota imbalance in Mexican children with type 1 diabetes

N. Ajami, J. Petrosino, M. Dominguez-Bello, 2014, Scientific Reports.

A Lachnospiraceae-dominated bacterial signature in the fecal microbiota of HIV-infected individuals from Colombia, South America

N. Ajami, J. Petrosino, Homero San-Juan-Vergara, 2018, Scientific Reports.

The Living Dead: Bacterial Community Structure of a Cadaver at the Onset and End of the Bloat Stage of Decomposition

Sibyl R. Bucheli, Aaron M. Lynne, J. Petrosino, 2013, PloS one.

The Changing Landscape of Type 1 Diabetes: Recent Developments and Future Frontiers

N. Ajami, J. Petrosino, K. Vehik, 2013, Current Diabetes Reports.

Toward the Understanding of the Human Virome

N. Ajami, J. Petrosino, 2015 .

Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus

G. Weinstock, D. Muzny, L. Nazareth, 2007, BMC Microbiology.

Exploration of Diet Quality by Obesity Severity in Association with Gestational Weight Gain and Distal Gut Microbiota in Pregnant African American Women: Opportunities for Intervention

J. Petrosino, R. N. Padgett, M. Hastings-Tolsma, 2021, Maternal and Child Health Journal.

MHC variation sculpts individualized microbial communities that control susceptibility to enteric infection

Ryan M. O’Connell, W. Potts, N. Ajami, 2015, Nature Communications.

Gut microbiome diversity is an independent predictor of survival in cervical cancer patients receiving chemoradiation

N. Ajami, J. Petrosino, J. Wargo, 2020, Communications Biology.

Temporal changes in gastrointestinal fungi and the risk of autoimmunity during early childhood: the TEDDY study

Daniel Patrick Smith, N. Ajami, J. Petrosino, 2022, Nature communications.

Serum Metabolome Is Associated With the Nasopharyngeal Microbiota and Disease Severity Among Infants With Bronchiolitis.

L. Liang, N. Ajami, J. Petrosino, 2019, The Journal of infectious diseases.

Dietary Fatty Acid Intake and the Colonic Gut Microbiota in Humans

J. Petrosino, H. El‐Serag, K. Hoffman, 2022, Nutrients.

Genetic and Environmental Determinants of Otitis Media in an Indigenous Filipino Population

S. Leal, N. Ajami, J. Petrosino, 2016, Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.

Discovery of common chemical exposures across three continents using silicone wristbands

Alan J. Bergmann, J. Petrosino, P. Laurienti, 2019, Royal Society Open Science.

Early nasal microbiota and acute respiratory infections during the first years of life

N. Ajami, J. Petrosino, V. Peltola, 2019, Thorax.

The role of the gastrointestinal microbiome in infectious complications during induction chemotherapy for acute myeloid leukemia

Daniel Patrick Smith, N. Ajami, J. Petrosino, 2016, Cancer.

The dynamics of a family’s gut microbiota reveal variations on a theme

J. Petrosino, P. Schloss, Kathryn Iverson, 2014, Microbiome.

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Chris I. Hunter, B. Birren, G. Cochrane, 2010 .

Monotonous Diets Protect Against Acute Colitis in Mice: Epidemiologic and Therapeutic Implications

J. Petrosino, M. C. Ross, R. Kellermayer, 2013, Journal of Pediatric Gastroenterology and Nutrition - JPGN.

Host Response to Probiotics Determined by Nutritional Status of Rotavirus-infected Neonatal Mice

J. Petrosino, J. Versalovic, Kevin P. Riehle, 2012, Journal of pediatric gastroenterology and nutrition.

MicroRNA-146a constrains multiple parameters of intestinal immunity and increases susceptibility to DSS colitis

Ryan M. O’Connell, Noah C. Welker, Daniel Patrick Smith, 2015, Oncotarget.

Metabolomic signatures distinguish the impact of formula carbohydrates on disease outcome in a preterm piglet model of NEC

B. Stoll, D. Burrin, N. Ajami, 2018, Microbiome.

Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes

G. Weinstock, R. Gibbs, D. Muzny, 2012, BMC Microbiology.

Development and accuracy of quantitative real-time polymerase chain reaction assays for detection and quantification of enterotoxigenic Escherichia coli (ETEC) heat labile and heat stable toxin genes in travelers' diarrhea samples.

N. Ajami, J. Petrosino, Bonnie P. Youmans, 2014, The American journal of tropical medicine and hygiene.

Metagenomes of rectal swabs in larger, advanced stage cervical cancers have enhanced mucus degrading functionalities and distinct taxonomic structure

N. Ajami, J. Petrosino, L. Ramondetta, 2022, BMC cancer.

Colonic Mucosa-associated Mycobiota in Individuals With Normal Colons

D. Graham, J. Petrosino, H. El‐Serag, 2021 .

Insular resting state functional connectivity is associated with gut microbiota diversity

D. Molfese, J. Petrosino, M. Robinson, 2019, The European journal of neuroscience.

Display of Functional β-Lactamase Inhibitory Protein on the Surface of M13 Bacteriophage

J. Petrosino, Wanzhi Huang, T. Palzkill, 1998, Antimicrobial Agents and Chemotherapy.

Display of Functional b-Lactamase Inhibitory Protein on the Surface of M 13 Bacteriophage

J. Petrosino, Wanzhi Huang, T. Palzkill, 1998 .

Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals

Donna M. Muzny, Fritz J. Sedlazeck, Richard A. Gibbs, 2020, bioRxiv.

Differential co-expression networks of the gut microbiota are associated with depression and anxiety treatment resistance among psychiatric inpatients

J. Petrosino, C. Coarfa, A. Madan, 2022, Progress in Neuro-Psychopharmacology and Biological Psychiatry.

Pathogenesis of Tobacco-Associated Lung Adenocarcinoma Is Closely Coupled with Changes in the Gut and Lung Microbiomes

J. Petrosino, J. Fujimoto, P. Lorenzi, 2022, International journal of molecular sciences.

Nasopharyngeal Proteobacteria are associated with viral etiology and acute wheezing in children with severe bronchiolitis.

J. Petrosino, C. Camargo, Embriette R. Hyde, 2014, The Journal of allergy and clinical immunology.

Prebiotics, Probiotics, and Acetate Supplementation Prevent Hypertension in a Model of Obstructive Sleep Apnea

N. Ajami, J. Petrosino, David J. Durgan, 2018, Hypertension.

Circulating 25‐hydroxyvitamin D, nasopharyngeal microbiota, and bronchiolitis severity

N. Ajami, J. Petrosino, J. Celedón, 2018, Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology.

Haemophilus-Dominant Nasopharyngeal Microbiota Is Associated With Delayed Clearance of Respiratory Syncytial Virus in Infants Hospitalized for Bronchiolitis

J. Petrosino, C. Camargo, A. Sullivan, 2018, The Journal of infectious diseases.

Microbial Diversity and Composition is Associated with Patient-Reported Toxicity during Chemoradiation Therapy for Cervical Cancer

J. Petrosino, L. Ramondetta, T. Karpinets, 2021 .

Gut microbiota as a source of a surrogate antigen that triggers autoimmunity in an immune privileged site

N. Ajami, J. Petrosino, K. Itoh, 2017, Gut microbes.

The Roles of Gut Microbiome and Plasma Metabolites in the Associations between ABO Blood Groups and Insulin Homeostasis: The Microbiome and Insulin Longitudinal Evaluation Study (MILES)

J. Petrosino, J. Rotter, D. Mook-Kanamori, 2022, Metabolites.

Progressive reduction in circulating levels of carotenoids and other micronutrients in patients with chronic pancreatitis.

J. Petrosino, N. Pankratz, K. Hoffman, 2022, Pancreatology : official journal of the International Association of Pancreatology (IAP) ... [et al.].

Universal microbial diagnostics using random DNA probes

Richard G Baraniuk, Rebekah A Drezek, Amirali Aghazadeh, 2016, Science Advances.

Maternal gut microbiota mediate intergenerational effects of high-fat diet on descendant social behavior.

Ian J. Bolding, J. Petrosino, K. Hoffman, 2022, Cell reports.

Gut Microbiome Proﬁles and Associated Metabolic Pathways in HIV-Infected Treatment-Naïve Patients

Daniel Patrick Smith, J. Petrosino, M. Mezzari, 2021 .

A framework for human microbiome research A framework for human microbiome research

Narmada, Tulin, Sheila, 2020 .

Complete Genome Sequence of Streptococcus mitis Strain SVGS_061 Isolated from a Neutropenic Patient with Viridans Group Streptococcal Shock Syndrome

Erika J. Thompson, N. Ajami, J. Petrosino, 2016, Genome Announcements.

Impact of Enhanced Staphylococcus DNA Extraction on Microbial Community Measures in Cystic Fibrosis Sputum

J. Petrosino, P. Schloss, V. Young, 2012, PloS one.

Salivary Biomarker Evaluation of Chronic Pancreatitis Patients Reveals Alterations in Human Proteins, Cytokines, Prostaglandin E2 Levels, and Bacterial Diversity

Elaina K. Jones, J. Petrosino, W. Fisher, 2022, Pancreas.

Spatial Characteristics of Colonic Mucosa-Associated Gut Microbiota in Humans

D. Graham, N. Ajami, J. Petrosino, 2021, Microbial Ecology.

Stress-Induced (cid:2) -Lactam Antibiotic Resistance Mutation and Sequences of Stationary-Phase Mutations in the Escherichia coli Chromosome (cid:1)

J. Petrosino, S. Rosenberg, R. Galhardo, 2009 .

Fungal cutaneous microbiome and host determinants in preterm and term neonates

J. Petrosino, K. Hoffman, J. Hagan, 2019, Pediatric Research.

Functional response to a microbial synbiotic in the gastrointestinal system of children: a randomized clinical trial

Gabriel A. Al-Ghalith, J. Petrosino, J. Versalovic, 2022, Pediatric Research.

Complete mutagenesis of the gene encoding TEM-1 β-lactamase

J. Petrosino, Wanzhi Huang, T. Palzkill, 1997 .

Bioactivity and Bioavailability of Ginsenosides are Dependent on the Glycosidase Activities of the A/J Mouse Intestinal Microbiome Defined by Pyrosequencing

R. Gibbs, J. Petrosino, Zhi-Hong Jiang, 2012, Pharmaceutical Research.

The gut mycobiome of the Human Microbiome Project healthy cohort

R. Gibbs, D. Muzny, Daniel Patrick Smith, 2017, Microbiome.

Dietary fiber and probiotics influence the gut microbiome and melanoma immunotherapy response

Jared C Malke, Julie M Simon, Christine B. Peterson, 2021, Science.

Oral microbiota reveals signs of acculturation in Mexican American women

P. Scheet, Daniel Patrick Smith, N. Ajami, 2018, PloS one.

Metagenomic Analyses of Alcohol Induced Pathogenic Alterations in the Intestinal Microbiome and the Effect of Lactobacillus rhamnosus GG Treatment

J. Petrosino, X. Qin, Tulin Ayvaz, 2013, PloS one.

The association between anterior nares and nasopharyngeal microbiota in infants hospitalized for bronchiolitis

C. Shaw, N. Ajami, J. Petrosino, 2018, Microbiome.

Serum LL-37 Levels Associated With Severity of Bronchiolitis and Viral Etiology

N. Ajami, J. Petrosino, C. Camargo, 2017, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Serum cathelicidin, nasopharyngeal microbiota, and disease severity among infants hospitalized with bronchiolitis.

N. Ajami, J. Petrosino, C. Camargo, 2017, The Journal of allergy and clinical immunology.

Association of nasopharyngeal microbiota profiles with bronchiolitis severity in infants hospitalised for bronchiolitis

C. Shaw, N. Ajami, J. Petrosino, 2016, European Respiratory Journal.

Oligofructose protects against arsenic-induced liver injury in a model of environment/obesity interaction.

Robin H. Schmidt, N. Ajami, J. Petrosino, 2015, Toxicology and applied pharmacology.

IgA-coated E. coli enriched in Crohn’s disease spondyloarthritis promote TH17-dependent inflammation

N. Ajami, J. Petrosino, L. Mandl, 2017, Science Translational Medicine.

Investigating Colonization of the Healthy Adult Gastrointestinal Tract by Fungi

N. Ajami, J. Petrosino, J. Auchtung, 2018, mSphere.

Development of the cutaneous microbiome in the preterm infant: A prospective longitudinal study

N. Ajami, J. Petrosino, J. Versalovic, 2017, PloS one.

Probiotics stimulate enterocyte migration and microbial diversity in the neonatal mouse intestine

J. Petrosino, J. Versalovic, Kevin P. Riehle, 2012, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Transmissible microbial and metabolomic remodeling by soluble dietary fiber improves metabolic homeostasis

N. Ajami, J. Petrosino, X. Tian, 2015, Scientific Reports.

Implementation of a Pan-Genomic Approach to Investigate Holobiont-Infecting Microbe Interaction: A Case Report of a Leukemic Patient with Invasive Mucormycosis

Hannah C. Beird, N. Ajami, J. Petrosino, 2015, PloS one.

Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays

G. Weinstock, E. Sodergren, J. Petrosino, 2008, BMC Microbiology.

Characterization of oral and gut microbiome temporal variability in hospitalized cancer patients

Daniel Patrick Smith, N. Ajami, J. Petrosino, 2017, Genome Medicine.

Conjunctival Microbiome Changes Associated With Soft Contact Lens and Orthokeratology Lens Wearing.

Changqing Zeng, N. Ajami, J. Petrosino, 2017, Investigative ophthalmology & visual science.

Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

J. Petrosino, C. Lamb, C. Stewart, 2019, BMC Microbiology.

Fully resolved assembly of Cryptosporidium parvum

R. Gibbs, D. Muzny, J. Petrosino, 2021, bioRxiv.

Genome Sequence of Fusobacterium nucleatum Subspecies Polymorphum — a Genetically Tractable Fusobacterium

G. Weinstock, G. Fox, J. Petrosino, 2007, PloS one.

Measurement of SOS expression in individual Escherichia coli K‐12 cells using fluorescence microscopy

J. Petrosino, S. Rosenberg, S. Sandler, 2004, Molecular microbiology.

The gut microbiota is associated with psychiatric symptom severity and treatment outcome among individuals with serious mental illness.

N. Ajami, J. Petrosino, A. Madan, 2020, Journal of affective disorders.

Structure and function of the healthy pre-adolescent pediatric gut microbiome

R. Gibbs, D. Muzny, J. Petrosino, 2015, Microbiome.

Human milk oligosaccharide DSLNT and gut microbiome in preterm infants predicts necrotising enterocolitis

Daniel Patrick Smith, J. Petrosino, C. Lamb, 2020, Gut.

Characterization of the human gut microbiome during travelers' diarrhea

N. Ajami, J. Petrosino, Bonnie P. Youmans, 2015, Gut microbes.

Prospective virome analyses in young children at increased genetic risk for type 1 diabetes

R. Gibbs, N. Ajami, J. Petrosino, 2019, Nature Medicine.

Temporal development of the gut microbiome in early childhood from the TEDDY study

R. Gibbs, C. Huttenhower, T. Vatanen, 2018, Nature.

Altered Mucosal Microbiome Diversity and Disease Severity in Sjögren Syndrome

Michael E. Stern, Stephen C. Pflugfelder, N. Ajami, 2016, Scientific Reports.

Metagenomic Analysis of Nitrate-Reducing Bacteria in the Oral Cavity: Implications for Nitric Oxide Homeostasis

J. Petrosino, N. Bryan, Embriette R. Hyde, 2014, PloS one.

Gut Microbiome Associates With Lifetime Cardiovascular Disease Risk Profile Among Bogalusa Heart Study Participants.

N. Ajami, J. Petrosino, A. Correa, 2016, Circulation research.

Decade-long bacterial community dynamics in cystic fibrosis airways

Susan Murray, Patrick D. Schloss, Jun Z. Li, 2012, Proceedings of the National Academy of Sciences.

Gut Microbiota–Derived Short-Chain Fatty Acids Promote Poststroke Recovery in Aged Mice

L. McCullough, J. Petrosino, J. Graf, 2020, Circulation research.

Single Delivery of High-Diversity Fecal Microbiota Preparation by Colonoscopy Is Safe and Effective in Increasing Microbial Diversity in Active Ulcerative Colitis

N. Ajami, J. Petrosino, D. Artis, 2017, Inflammatory bowel diseases.

The impact of the Th17:Treg axis on the IgA-Biome across the glycemic spectrum

J. Petrosino, G. Jun, H. Dupont, 2021, PloS one.

Influence of fecal collection conditions and 16S rRNA gene sequencing protocols at two centers on human gut microbiota analysis

Alexandra J. Roth-Schulze, N. Ajami, J. Petrosino, 2017, bioRxiv.

Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes

Christine B. Peterson, S. Hanash, A. Lucas, 2019, Cell.

Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals

R. Gibbs, D. Muzny, J. Petrosino, 2021, PloS one.

Oligonucleotide Capture Sequencing of the SARS-CoV-2 Genome and Subgenomic Fragments from COVID-19 Individuals

R. Gibbs, D. Muzny, J. Petrosino, 2020, bioRxiv.

Rationale, design and baseline characteristics of the Microbiome and Insulin Longitudinal Evaluation Study (MILES)

J. Petrosino, J. Rotter, S. Rich, 2020, Diabetes, obesity & metabolism.

Microbiome–Epigenome Interactions and the Environmental Origins of Inflammatory Bowel Diseases

J. Petrosino, Tatiana Y. Fofanova, R. Kellermayer, 2016, Journal of pediatric gastroenterology and nutrition.

Association of Maternal Gestational Weight Gain With the Infant Fecal Microbiota

N. Ajami, J. Petrosino, C. Camargo, 2017, Journal of pediatric gastroenterology and nutrition.

Association of household siblings with nasal and fecal microbiota in infants

N. Ajami, J. Petrosino, C. Camargo, 2022 .

Human milk oligosaccharides, milk microbiome and infant gut microbiome modulate neonatal rotavirus infection

G. Kang, N. Ajami, J. Petrosino, 2018, Nature Communications.

The Fecal Microbiota Profile and Bronchiolitis in Infants

N. Ajami, J. Petrosino, C. Camargo, 2016, Pediatrics.

Nasal Airway Microbiota Profile and Severe Bronchiolitis in Infants: A Case-control Study

N. Ajami, J. Petrosino, C. Camargo, 2017, The Pediatric infectious disease journal.

Household siblings and nasal and fecal microbiota in infants

N. Ajami, J. Petrosino, C. Camargo, 2017, Pediatrics international : official journal of the Japan Pediatric Society.

Influence of fecal collection conditions and 16S rRNA gene sequencing at two centers on human gut microbiota analysis

Alexandra J. Roth-Schulze, N. Ajami, J. Petrosino, 2018, Scientific Reports.

Antibiotics in neonatal life increase murine susceptibility to experimental psoriasis

Daniel Patrick Smith, N. Ajami, J. Petrosino, 2015, Nature Communications.

16S gut community of the Cameron County

R. Gibbs, D. Muzny, J. Petrosino, 2015 .

The dynamics of a family’s gut microbiota reveal variations on a theme

J. Petrosino, P. Schloss, Kathryn Iverson, 2014, Microbiome.

Cesarean or Vaginal Birth Does Not Impact the Longitudinal Development of the Gut Microbiome in a Cohort of Exclusively Preterm Infants

Daniel Patrick Smith, J. Petrosino, E. Clements, 2017, Front. Microbiol..

Enteric Viral Metagenomics

N. Ajami, J. Petrosino, 2016 .

The Fecal Microbiome in Infants with Biliary Atresia Associates with Bile Flow after Kasai Portoenterostomy.

J. Petrosino, S. Harpavat, K. Hoffman, 2020, Journal of pediatric gastroenterology and nutrition.

A microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis.

G. Gerber, J. Petrosino, J. Warrington, 2013, The Journal of allergy and clinical immunology.

The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment.

C. Huttenhower, N. Segata, D. Gevers, 2011, Cell host & microbe.

Alterations in the gut microbiota can elicit hypertension in rats.

N. Ajami, J. Petrosino, David J. Durgan, 2017, Physiological genomics.

The role of gut microbiota in fetal methylmercury exposure: Insights from a pilot study.

N. Ajami, J. Petrosino, A. Johs, 2016, Toxicology letters.

Role of the Gut Microbiome in Obstructive Sleep Apnea–Induced Hypertension

N. Ajami, J. Petrosino, David J. Durgan, 2016, Hypertension.

Potential role of gastrointestinal microbiota composition in prostate cancer risk

N. Ajami, J. Petrosino, M. Mims, 2013, Infectious Agents and Cancer.

Dietary inflammatory potential in relation to the gut microbiome: results from a cross-sectional study

S. Hanash, J. Petrosino, C. Daniel, 2020, British Journal of Nutrition.

Gut microbiota signatures are associated with toxicity to combined CTLA-4 and PD-1 blockade

N. Ajami, J. Petrosino, P. Opolon, 2020, Nature Medicine.

Intermittent fasting from dawn to sunset for 30 consecutive days is associated with anticancer proteomic signature and upregulates key regulatory proteins of glucose and lipid metabolism, circadian clock, DNA repair, cytoskeleton remodeling, immune system and cognitive function in healthy subjects.

J. Petrosino, S. Jung, M. Mezzari, 2020, Journal of proteomics.

beta-Lactamases: protein evolution in real time.

J. Petrosino, T. Palzkill, C. Cantu, 1998, Trends in microbiology.

Generation and Validation of a Shewanella oneidensis MR-1 Clone Set for Protein Expression and Phage Display

G. Weinstock, Jizhong Zhou, J. Petrosino, 2008, PloS one.

Metagenomic Information Recovery from Human Stool Samples Is Influenced by Sequencing Depth and Profiling Method

J. Petrosino, D. Knights, M. C. Ross, 2020, Genes.

The Skin Microbiome of Gambusia affinis Is Defined and Selective

Ananda B. W. Manage, Sonja B. Yung, J. Petrosino, 2014 .

Microbiome disruption and recovery in the fish Gambusia affinis following exposure to broad-spectrum antibiotic

J. Petrosino, J. Carlson, Embriette R. Hyde, 2017, Infection and drug resistance.

Draft genome sequences and description of Lactobacillus rhamnosus strains L31, L34, and L35

R. Gibbs, D. Muzny, J. Petrosino, 2014, Standards in genomic sciences.

Alcohol use alters the colonic mucosa-associated gut microbiota in humans.

D. Graham, N. Ajami, J. Petrosino, 2020, Nutrition research.

Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome.

Aleksandar Milosavljevic, Cristian Coarfa, Kevin Riehle, 2011, Gastroenterology.

Middle ear microbiome differences in indigenous Filipinos with chronic otitis media due to a duplication in the A2ML1 gene

S. Leal, J. Belmont, N. Ajami, 2016, Infectious Diseases of Poverty.

Frequency of Tongue Cleaning Impacts the Human Tongue Microbiome Composition and Enterosalivary Circulation of Nitrate

N. Ajami, J. Petrosino, N. Bryan, 2019, Front. Cell. Infect. Microbiol..

Spatial Characteristics of Colonic Mucosa-Associated Gut Microbiota in Humans

D. Graham, N. Ajami, J. Petrosino, 2021, Microbial ecology.

Impact of Age-Related Mitochondrial Dysfunction and Exercise on Intestinal Microbiota Composition

Laura C. Greaves, J. Petrosino, D. Turnbull, 2017, The journals of gerontology. Series A, Biological sciences and medical sciences.

Microbial-Derived Metabolites Reflect an Altered Intestinal Microbiota during Catch-Up Growth in Undernourished Neonatal Mice.

N. Ajami, J. Petrosino, M. Wong, 2016, The Journal of nutrition.

Composition and function of the undernourished neonatal mouse intestinal microbiome.

N. Ajami, J. Petrosino, M. Wong, 2015, The Journal of nutritional biochemistry.

Mathematical modeling of primary succession of murine intestinal microbiota

Simeone Marino, Patrick D. Schloss, J. Petrosino, 2013, Proceedings of the National Academy of Sciences.

The Human Microbiome

J. Petrosino, J. Versalovic, S. Highlander, 2011 .

A type VII secretion system of Streptococcus gallolyticus subsp. gallolyticus contributes to gut colonization and the development of colon tumors

J. Petrosino, M. Holder, Xinsheng Gao, 2021, PLoS pathogens.

Comparison of Methods To Collect Fecal Samples for Microbiome Studies Using Whole-Genome Shotgun Metagenomic Sequencing

E. Vogtmann, X. Hua, Jianxin Shi, 2020, mSphere.

A study of innate immune kinetics reveals a role for a chloride transporter in a virulent Francisella tularensis type B strain

J. Petrosino, L. Matz, 2021, MicrobiologyOpen.

The BE GONE trial study protocol: a randomized crossover dietary intervention of dry beans targeting the gut microbiome of overweight and obese patients with a history of colorectal polyps or cancer

S. Hanash, P. Scheet, J. Petrosino, 2019, BMC Cancer.

The Human Virome

N. Ajami, J. Petrosino, M. C. Ross, 2016 .

Murine norovirus infection does not cause major disruptions in the murine intestinal microbiota

J. Petrosino, Justin Kuczynski, V. Young, 2013, Microbiome.

Chromosome Rearrangement and Diversification of Francisella tularensis Revealed by the Type B (OSU18) Genome Sequence

Kenneth D. Clinkenbeard, George E. Fox, Akif Uzman, 2006, Journal of bacteriology.

Leveraging Human Microbiome Features to Diagnose and Stratify Children with Irritable Bowel Syndrome

Donna M. Muzny, Richard A. Gibbs, Ginger A. Metcalf, 2019, The Journal of molecular diagnostics : JMD.

Initial insights into bacterial succession during human decomposition

Sibyl R. Bucheli, Aaron M. Lynne, J. Petrosino, 2015, Zeitschrift für Rechtsmedizin.

Dietary quality and the colonic mucosa-associated gut microbiome in humans.

D. Graham, N. Ajami, J. Petrosino, 2019, The American journal of clinical nutrition.

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

Colin J. Brislawn, R. White, C. Huttenhower, 2019, Nature.

Maternal micronutrients can modify colonic mucosal microbiota maturation in murine offspring

J. Petrosino, M. C. Ross, S. Dowd, 2012, Gut microbes.

Effects of tobacco smoke and electronic cigarette vapor exposure on the oral and gut microbiota in humans: a pilot study

Richard De La Garza, Nadim J Ajami, Joseph F Petrosino, 2018, PeerJ.

Microbial Diversity and Composition is Associated with Patient-Reported Toxicity during Chemo radiation Therapy for Cervical Cancer.

J. Petrosino, L. Ramondetta, Jianhua Zhang, 2020, International journal of radiation oncology, biology, physics.

Habitual Sleep Duration and the Colonic Mucosa-Associated Gut Microbiota in Humans—A Pilot Study

D. Graham, N. Ajami, J. Petrosino, 2021, Clocks & sleep.

Bacteroides ovatus ATCC 8483 monotherapy is superior to traditional fecal transplant and multi-strain bacteriotherapy in a murine colitis model

D. Graham, J. Petrosino, J. Versalovic, 2019, Gut microbes.

The microbiome in precision medicine: the way forward

J. Petrosino, 2018, Genome Medicine.

The gut mycobiome of the Human Microbiome Project healthy cohort

R. Gibbs, D. Muzny, Daniel Patrick Smith, 2017, Microbiome.

The microbiota modulates gut physiology and behavioral abnormalities associated with autism

J. Petrosino, S. Mazmanian, S. Reisman, 2014 .

Amino acid sequence determinants of beta-lactamase structure and activity.

J. Petrosino, P. Shenkin, T. Palzkill, 1996, Journal of molecular biology.

Exploration of the Vaginal and Gut Microbiome in African American Women by Body Mass Index, Class of Obesity, and Gestational Weight Gain: A Pilot Study

N. Ajami, J. Petrosino, K. Greathouse, 2019, American Journal of Perinatology.

The Gut Microbiome Modulates Colon Tumorigenesis

J. Petrosino, P. Schloss, Nielson T. Baxter, 2013, mBio.

Stress-Induced β-Lactam Antibiotic Resistance Mutation and Sequences of Stationary-Phase Mutations in the Escherichia coli Chromosome

J. Petrosino, S. Rosenberg, R. Galhardo, 2009, Journal of bacteriology.

Safety and preliminary efficacy of orally administered lyophilized fecal microbiota product compared with frozen product given by enema for recurrent Clostridium difficile infection: A randomized clinical trial

Christine B. Peterson, N. Ajami, J. Petrosino, 2018, PloS one.

Author Correction: A combined risk score enhances prediction of type 1 diabetes among susceptible children

P. Bingley, E. Bonifacio, J. Ilonen, 2020, Nature Medicine.

A combined risk score enhances prediction of type 1 diabetes among susceptible children

P. Bingley, E. Bonifacio, J. Ilonen, 2020, Nature Medicine.

Metagenomics of the faecal virome indicate a cumulative effect of enterovirus and gluten amount on the risk of coeliac disease autoimmunity in genetically at risk children: the TEDDY study

M. Nykter, J. Petrosino, W. Hagopian, 2019, Gut.

Dietary Nutrients Involved in One-Carbon Metabolism and Colonic Mucosa-Associated Gut Microbiome in Individuals with an Endoscopically Normal Colon

D. Graham, N. Ajami, J. Petrosino, 2019, Nutrients.

Sequence type 1 group B Streptococcus, an emerging cause of invasive disease in adults, evolves by small genetic changes

Erika J. Thompson, Miguel A. Saldaña, N. Ajami, 2015, Proceedings of the National Academy of Sciences.

Adaptive Amplification and Point Mutation Are Independent Mechanisms: Evidence for Various Stress-Inducible Mutation Mechanisms

J. Petrosino, S. Rosenberg, P. Hastings, 2004, PLoS biology.

Randomised clinical trial: faecal microbiota transplantation for recurrent Clostridum difficile infection – fresh, or frozen, or lyophilised microbiota from a small pool of healthy donors delivered by colonoscopy

N. Ajami, J. Petrosino, Z. Jiang, 2017, Alimentary pharmacology & therapeutics.

Maximal viral information recovery from sequence data using VirMAP

Nadim J Ajami, Matthew C Wong, Matthew C Ross, 2018, Nature Communications.

Complete Genome Sequence of Elephant Endotheliotropic Herpesvirus 1A

R. Gibbs, D. Muzny, J. Petrosino, 2013, Genome Announcements.

Effect of Antibiotics on Gut and Vaginal Microbiomes Associated with Cervical Cancer Development in Mice

J. Petrosino, P. A. Futreal, T. Karpinets, 2020, Cancer Prevention Research.

Alterations of the gut microbial community structure and function with aging in the spontaneously hypertensive stroke prone rat

J. Petrosino, David J. Durgan, Huanan Shi, 2022, Scientific Reports.

Characterization of the rat oral microbiome and the effects of dietary nitrate.

J. Petrosino, N. Bryan, Embriette R. Hyde, 2014, Free radical biology & medicine.

Restructuring the Gut Microbiota by Intermittent Fasting Lowers Blood Pressure

J. Petrosino, David J. Durgan, Huanan Shi, 2021, Circulation research.

The gut microbiome contributes to blood‐brain barrier disruption in spontaneously hypertensive stroke prone rats

J. Petrosino, David J. Durgan, R. Bryan, 2021, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

The Gut Microbiome of the Vector Lutzomyia longipalpis Is Essential for Survival of Leishmania infantum

N. Ajami, J. Petrosino, J. Kirby, 2017, mBio.

Chromosomal System for Studying AmpC-Mediated β-Lactam Resistance Mutation in Escherichia coli

J. Petrosino, S. Rosenberg, J. Weiner, 2002, Antimicrobial Agents and Chemotherapy.

Impact of Oral Fidaxomicin Administration on the Intestinal Microbiota and Susceptibility to Clostridium difficile Colonization in Mice

N. Ajami, J. Petrosino, M. Wong, 2018, Antimicrobial Agents and Chemotherapy.

Antibiotic‐mediated bacteriome depletion in ApcMin/+ mice is associated with reduction in mucus‐producing goblet cells and increased colorectal cancer progression

N. Ajami, J. Petrosino, Sourav Banerjee, 2018, Cancer medicine.

Microbiome Responses to Vancomycin Treatment in a Child With Primary Sclerosing Cholangitis and Ulcerative Colitis

J. Petrosino, T. Miloh, K. Hoffman, 2021, ACG case reports journal.

Multiple RSV strains infecting HEp-2 and A549 cells reveal cell line-dependent differences in resistance to RSV infection

R. Gibbs, F. Stossi, D. Muzny, 2021, bioRxiv.

Fructan‐sensitive children with irritable bowel syndrome have distinct gut microbiome signatures

Daniel Patrick Smith, J. Petrosino, J. Versalovic, 2020, Alimentary pharmacology & therapeutics.

Multiple Respiratory Syncytial Virus (RSV) Strains Infecting HEp-2 and A549 Cells Reveal Cell Line-Dependent Differences in Resistance to RSV Infection

R. Gibbs, F. Stossi, D. Muzny, 2022, Journal of virology.

Changes in cystic fibrosis airway microbiota at pulmonary exacerbation.

J. Petrosino, P. Schloss, V. Young, 2013, Annals of the American Thoracic Society.

Meeting report for the 1st skin microbiota workshop, boulder, CO October 15-16 2012

M. Ball, C. Huttenhower, H. Kong, 2014, Standards in Genomic Sciences.

Tumor microbial diversity and compositional differences among women in Botswana with high-grade cervical dysplasia and cervical cancer

J. Petrosino, A. Klopp, M. Mezzari, 2020, International Journal of Gynecological Cancer.

Fusobacterium Nucleatum Subspecies Animalis Influences Proinflammatory Cytokine Expression and Monocyte Activation in Human Colorectal Tumors

Ling Xia, Rajat Bhattacharya, Lee M Ellis, 2017, Cancer Prevention Research.

Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

Daniel Patrick Smith, J. Petrosino, B. Abdulkadir, 2016, Microbiome.

Is the gut microbiota associated with suicidality? Non-significant finding among a large cohort of psychiatrically hospitalized individuals with serious mental illness

J. Petrosino, A. Madan, M. Bradshaw, 2021, Journal of Affective Disorders Reports.

Distinct gene expression profiles between human preterm-derived and adult-derived intestinal organoids exposed to Enterococcus faecalis: a pilot study

J. Petrosino, S. Cockell, M. Estes, 2021, Gut.

Susceptibility of β-lactamase to core amino acid substitutions

J. Petrosino, T. Palzkill, M. Baker, 1999 .

Saturated and Unsaturated Dietary Fats Differentially Modulate Ethanol-Induced Changes in Gut Microbiome and Metabolome in a Mouse Model of Alcoholic Liver Disease.

Yanlong Liu, Xinmin Yin, Xiang Zhang, 2016, The American journal of pathology.

Respiratory syncytial virus and rhinovirus severe bronchiolitis are associated with distinct nasopharyngeal microbiota.

C. Shaw, N. Ajami, J. Petrosino, 2016, The Journal of allergy and clinical immunology.

Increased Moraxella and Streptococcus species abundance after severe bronchiolitis is associated with recurrent wheezing

C. Shaw, J. Petrosino, C. Camargo, 2019, Journal of Allergy and Clinical Immunology.

Decrease in acetyl-CoA pathway utilizing butyrate-producing bacteria is a key pathogenic feature of alcohol-induced functional gut microbial dysbiosis and development of liver disease in mice

J. Petrosino, C. McClain, S. Joshi‐Barve, 2021, Gut microbes.

Age-Associated Gut Dysbiosis, Marked by Loss of Butyrogenic Potential, Correlates With Altered Plasma Tryptophan Metabolites in Older People Living With HIV

J. Petrosino, R. Cook, C. McClain, 2022, Journal of acquired immune deficiency syndromes.

Oral insulin immunotherapy in children at risk for type 1 diabetes in a randomised controlled trial

E. Bonifacio, J. Petrosino, A. Ziegler, 2021, Diabetologia.

Baseline Oral Microbiome and All-cancer Incidence in a Cohort of Nonsmoking Mexican American Women

P. Scheet, J. Petrosino, C. Daniel, 2020, Cancer Prevention Research.

Oral Health and the Altered Colonic Mucosa-Associated Gut Microbiota

J. Petrosino, H. El‐Serag, K. Hoffman, 2020, Digestive Diseases and Sciences.

Impact of Diabetes on the Gut and Salivary IgA Microbiomes

J. Petrosino, G. Jun, H. Dupont, 2020, Infection and Immunity.

Longitudinal Changes in Early Nasal Microbiota and the Risk of Childhood Asthma

J. Petrosino, C. Camargo, K. Hoffman, 2020, Pediatrics.

Oral insulin immunotherapy in children at risk for type 1 diabetes in a randomized trial

E. Bonifacio, J. Petrosino, A. Ziegler, 2020 .

Rotavirus infection induces glycan availability to promote ileum-specific changes in the microbiome aiding rotavirus virulence

N. Ajami, J. Petrosino, D. Hutchinson, 2020, Gut microbes.

Maternal Fish Consumption in Pregnancy Is Associated with a Bifidobacterium-Dominant Microbiome Profile in Infants

N. Ajami, J. Petrosino, C. Camargo, 2019, Current developments in nutrition.

Murine Model of Chemotherapy-Induced Extraintestinal Pathogenic Escherichia coli Translocation

N. Ajami, J. Petrosino, R. Price, 2015, Infection and Immunity.

Lung tissue microbial profile in lung cancer is distinct from emphysema.

M. Spitz, Daniel Patrick Smith, N. Ajami, 2018, American journal of cancer research.

Enteroaggregative E. coli Adherence to Human Heparan Sulfate Proteoglycans Drives Segment and Host Specific Responses to Infection

J. Petrosino, Xuezheng Song, C. Coarfa, 2020, PLoS pathogens.

RecBCD Enzyme, Pathway

J. Petrosino, P. Hastings, 2001 .

Transmission event of SARS-CoV-2 delta variant reveals multiple vaccine breakthrough infections

R. Gibbs, D. Muzny, J. Petrosino, 2021, BMC Medicine.

Transmission event of SARS-CoV-2 delta variant reveals multiple vaccine breakthrough infections

R. Gibbs, D. Muzny, J. Petrosino, 2021, BMC Medicine.

Assessment of a SARS-CoV-2 wastewater monitoring program in El Paso, Texas, from November 2020 to June 2022.

J. Petrosino, A. Maresso, M. Mezzari, 2023, International journal of environmental health research.

Houston hurricane Harvey health (Houston-3H) study: assessment of allergic symptoms and stress after hurricane Harvey flooding

J. Petrosino, X. Gu, E. Symanski, 2021, Environmental Health.

Common Variable Immunodeficiency Patient Fecal Microbiota Transplant Recapitulates Gut Dysbiosis

Julia Oh, A. Voigt, J. Petrosino, 2023, Research square.

Water management impacts rice methylmercury and the soil microbiome.

N. Ajami, J. Petrosino, S. Rothenberg, 2016, The Science of the total environment.

Wastewater pandemic preparedness: Toward an end-to-end pathogen monitoring program

John E. Balliew, Jennifer I. Deegan, E. Boerwinkle, 2023, Frontiers in Public Health.

Effect of Sample Storage Conditions on Culture-Independent Bacterial Community Measures in Cystic Fibrosis Sputum Specimens

J. Petrosino, P. Schloss, V. Young, 2011, Journal of Clinical Microbiology.

β-Lactamases: protein evolution in real time

J. Petrosino, T. Palzkill, C. Cantu, 1998 .

The Association between Caffeine Intake and the Colonic Mucosa-Associated Gut Microbiota in Humans—A Preliminary Investigation

J. Petrosino, H. El‐Serag, K. Hoffman, 2023, Nutrients.

Respiratory Syncytial Virus and Rhinovirus Bronchiolitis Are Associated With Distinct Metabolic Pathways

N. Ajami, J. Petrosino, C. Camargo, 2018, The Journal of infectious diseases.

Arginine Metabolism Is Altered in Adults with A-β + Ketosis-Prone Diabetes.

N. Ajami, J. Petrosino, C. Hampe, 2018, The Journal of nutrition.

Associations of Nasopharyngeal Metabolome and Microbiome with Severity among Infants with Bronchiolitis. A Multiomic Analysis

N. Ajami, J. Petrosino, C. Camargo, 2017, American journal of respiratory and critical care medicine.

The host effects of Gambusia affinis with an antibiotic-disrupted microbiome.

Ananda B. W. Manage, J. Petrosino, J. Carlson, 2015, Comparative biochemistry and physiology. Toxicology & pharmacology : CBP.

Butyrate-Producing Bacteria and Insulin Homeostasis: The Microbiome and Insulin Longitudinal Evaluation Study (MILES).

J. Petrosino, J. Rotter, M. Goodarzi, 2021, Diabetes.

Influence of fecal collection conditions and 16S rRNA gene sequencing at two centers on human gut microbiota analysis

Alexandra J. Roth-Schulze, N. Ajami, J. Petrosino, 2018, Scientific Reports.

Microbiome Dynamics During Chemoradiotherapy for Anal Cancer.

E. Holliday, N. Ajami, J. Petrosino, 2022, International journal of radiation oncology, biology, physics.

Nitrate-Reducing Oral Bacteria: Linking Oral and Systemic Health

J. Petrosino, N. Bryan, 2017 .

GPR43 stimulation on TCRαβ+ intraepithelial colonic lymphocytes inhibits the recruitment of encephalitogenic T-cells into the central nervous system and attenuates the development of autoimmunity

J. Petrosino, E. Riquelme, R. Pacheco, 2023, Journal of Neuroinflammation.

Fresh, Frozen, or Lyophilized Fecal Microbiota Transplantation (FMT) for Multiple Recurrent C. difficile Infection (CDI): 734

N. Ajami, J. Petrosino, H. Dupont, 2014 .

Triple Bacteroides Fecal Replacement Therapy for Relapsing Clostridium difficile Diarrhea (Fecal Transplantation Sans Feces): 577

D. Muzny, D. Graham, J. Petrosino, 2013 .

Bioactivity and Bioavailability of Ginsenosides are Dependent on the Glycosidase Activities of the A/J Mouse Intestinal Microbiome Defined by Pyrosequencing

R. Gibbs, J. Petrosino, Taijun Yin, 2013, Pharmaceutical Research.

Maximal viral information recovery from sequence data using VirMAP

N. Ajami, J. Petrosino, M. C. Ross, 2018, Nature Communications.

Association of diversity and composition of the gut microbiome with differential responses to PD-1 based therapy in patients with metastatic melanoma.

N. Ajami, J. Petrosino, J. Wargo, 2017 .

Gut Microbiome Profiles and Associated Metabolic Pathways in HIV-Infected Treatment-Naïve Patients

Daniel Patrick Smith, J. Petrosino, M. Mezzari, 2020, Cells.

Title: Gut microbiome profiles and associated metabolic pathways in HIV-infected treatment-naïve patients

J. Petrosino, Daniel P. Smith, G. Bello, 2020 .

The association between anterior nares and nasopharyngeal microbiota in infants hospitalized for bronchiolitis

C. Shaw, N. Ajami, J. Petrosino, 2018, Microbiome.

Contributions of Aspartate 49 and Phenylalanine 142 Residues of a Tight Binding Inhibitory Protein of β-Lactamases*

J. Petrosino, T. Palzkill, H. Gilbert, 1999, The Journal of Biological Chemistry.

The relationship between nasopharyngeal CCL5 and microbiota on disease severity among infants with bronchiolitis

N. Ajami, J. Petrosino, C. Camargo, 2017, Allergy.

Challenges of Francisella classification exemplified by an atypical clinical isolate.

R. Gibbs, J. Petrosino, G. Metcalf, 2017, Diagnostic microbiology and infectious disease.

Complete Genome Sequence of Vibrio gazogenes ATCC 43942

N. Ajami, J. Petrosino, M. Holder, 2017, Genome Announcements.

Complete Genome Sequence of Turicibacter sp. Strain H121, Isolated from the Feces of a Contaminated Germ-Free Mouse

N. Ajami, J. Petrosino, M. Holder, 2016, Genome Announcements.

Microbiome Dynamics During Chemoradiotherapy for Anal Cancer

E. Holliday, N. Ajami, J. Petrosino, 2021, medRxiv.

Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

J. Petrosino, C. Lamb, C. Stewart, 2019, BMC Microbiology.

Systematic mutagenesis of the active site omega loop of TEM-1 beta-lactamase

J. Petrosino, T. Palzkill, J F Petrosino, 1996, Journal of bacteriology.

Francisella Tularensis Genomics and Proteomics

J. Petrosino, R. Titball, 2007, Annals of the New York Academy of Sciences.

Sphingolipid metabolism potential in fecal microbiome and bronchiolitis in infants: a case–control study

N. Ajami, J. Petrosino, C. Camargo, 2017, BMC Research Notes.

Diversity and composition of gut microbiome of cervical cancer patients: Do results of 16S rRNA sequencing and whole genome sequencing approaches align?

N. Ajami, J. Petrosino, T. Karpinets, 2021, Journal of microbiological methods.

16S gut community of the Cameron County Hispanic Cohort

R. Gibbs, D. Muzny, J. Petrosino, 2015, Microbiome.

Functional Genomics of Gastrointestinal Escherichia coli Isolated from Patients with Cancer and Diarrhea

R. Gibbs, D. Muzny, J. Petrosino, 2023, bioRxiv.

Diversity and composition of gut microbiome of cervical cancer patients by 16S rRNA and whole-metagenome sequencing

N. Ajami, J. Petrosino, T. Karpinets, 2020, bioRxiv.

BMC Microbiology BioMed Central

G. Weinstock, E. Sodergren, J. Petrosino, 2007 .

Human milk oligosaccharides, milk microbiome and infant gut microbiome modulate neonatal rotavirus infection

G. Kang, N. Ajami, J. Petrosino, 2018, Nature Communications.

73: Metagenomic-based approach to a comprehensive characterization of the vaginal microbiome signature in pregnancy

A. Milosavljevic, J. Petrosino, C. Coarfa, 2011 .

Fecal Indole Correlates With Loss of Microbiome Diversity in Hematopoietic Stem Cell Transplant (HSCT) Recipients With and Without Intestinal Graft Versus Host Disease (iGVHD)

N. Ajami, J. Petrosino, E. Shpall, 2015 .

Urinary Tract Infections in Children with Vesicoureteral Reflux Are Accompanied by Alterations in Urinary Microbiota and Metabolome Profiles.

Richard S. Lee, J. Petrosino, R. Adam, 2021, European Urology.

Lyophilized Fecal Microbiota Transplantation Capsules for Recurrent Clostridium difficile Infection

N. Ajami, J. Petrosino, G. Jun, 2017, Open Forum Infectious Diseases.

Longitudinal host transcriptional responses to SARS-CoV-2 infection in adults with extremely high viral load

J. Petrosino, G. Metcalf, C. Creighton, 2023, Research square.

Drivers of Transcriptional Variance in Human Intestinal Epithelial Organoids.

R. DePinho, J. Petrosino, H. Doddapaneni, 2021, Physiological genomics.

Additional file 11: Table S8. of Structure and function of the healthy pre-adolescent pediatric gut microbiome

R. Gibbs, J. Petrosino, G. Metcalf, 2015 .

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.

B. Haas, B. Birren, D. Tabbaa, 2011, Genome research.

The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment.

C. Huttenhower, N. Segata, D. Gevers, 2011, Cell host & microbe.

Serum cathelicidin, nasopharyngeal microbiota, and disease severity among infants hospitalized with bronchiolitis.

N. Ajami, J. Petrosino, C. Camargo, 2017, The Journal of allergy and clinical immunology.

The Fecal Microbiota Profile and Bronchiolitis in Infants

N. Ajami, J. Petrosino, C. Camargo, 2016, Pediatrics.

Gut Microbiome Associates With Lifetime Cardiovascular Disease Risk Profile Among Bogalusa Heart Study Participants.

N. Ajami, J. Petrosino, Jiang He, 2016, Circulation research.

Functional response to a microbial synbiotic in the gastrointestinal system of constipated children

J. Petrosino, J. Versalovic, B. Chumpitazi, 2022, medRxiv.

Microbial-Derived Metabolites Reflect an Altered Intestinal Microbiota during Catch-Up Growth in Undernourished Neonatal Mice.

N. Ajami, J. Petrosino, M. Wong, 2016, The Journal of nutrition.

History of childhood physical abuse is associated with gut microbiota diversity among adult psychiatric inpatients.

J. Petrosino, A. Madan, B. Frueh, 2023, Journal of affective disorders.

Estradiol mediates colonic epithelial protection in aged mice after stroke and is associated with shifts in the gut microbiome

J. Petrosino, Juneyoung Lee, V. Venna, 2023, Gut microbes.

Phage-bacteria dynamics during the first years of life revealed by trans-kingdom marker gene analysis

Michael J. Tisza, J. Petrosino, M. Rewers, 2023, bioRxiv.

8: Whole metagenomic shotgun sequencing reveals a vibrant placental microbiome harboring metabolic function

J. Petrosino, K. Aagaard, J. Versalovic, 2012 .

Exploration of Diet Quality by Obesity Severity in Association with Gestational Weight Gain and Distal Gut Microbiota in Pregnant African American Women: Opportunities for Intervention

J. Petrosino, R. N. Padgett, M. Hastings-Tolsma, 2021, Maternal and Child Health Journal.

Tumor-resident Lactobacillus iners confer chemoradiation resistance through lactate-induced metabolic rewiring.

N. Ajami, J. Petrosino, C. Taniguchi, 2023, Cancer cell.

Prospective characterization of oral and gut microbiome in a high-risk pancreatic cancer cohort.

J. Petrosino, A. Maitra, J. White, 2023, Journal of Clinical Oncology.

Isolation and concentration of bacteria from blood using microfluidic membraneless dialysis and dielectrophoresis.

N. Ajami, J. Petrosino, P. Gascoyne, 2017, Lab on a chip.