Julian Lee

发表

Principles of maximum entropy and maximum caliber in statistical physics

K. Dill, K. Ghosh, S. Pressé, 2013 .

Protein structure prediction based on fragment assembly and parameter optimization.

Julian Lee, Seung-Yeon Kim, Jooyoung Lee, 2005, Biophysical chemistry.

PROTEINS: Structure, Function, and Bioinformatics 56:704–714 (2004) Prediction of Protein Tertiary Structure Using PROFESY, a Novel Method Based on Fragment Assembly and

Julian Lee, Seung-Yeon Kim, Jooyoung Lee, 2022 .

Unbiased global optimization of Lennard-Jones clusters for N < or =201 using the conformational space annealing method.

Julian Lee, In-Ho Lee, Jooyoung Lee, 2003, Physical review letters.

Hydrodynamic interaction facilitates the unsteady transport of two neighboring vesicles.

Sean L. Seyler, S. Pressé, Julian Lee, 2019, The Journal of chemical physics.

Quantitative Analysis of a Transient Dynamics of a Gene Regulatory Network

Julian Lee, Jaejung Lee, 2018, bioRxiv.

Quantitative Analysis of a Transient Dynamics of a Gene Regulatory Network

Julian Lee, Jaejung Lee, 2018, bioRxiv.

Stability analysis of an autocatalytic protein model

Julian Lee, 2016 .

Full Optimization of Linear Parameters of a United Residue Protein Potential

Julian Lee, Jooyoung Lee, Kibeom Park, 2002, cond-mat/0309486.

Folding of small proteins using a single continuous potential.

Julian Lee, Seung-Yeon Kim, Jooyoung Lee, 2004, The Journal of chemical physics.

Folding simulations of small proteins.

Julian Lee, Seung-Yeon Kim, Jooyoung Lee, 2005, Biophysical chemistry.

Microcanonical origin of the maximum entropy principle for open systems.

S. Pressé, Julian Lee, 2012, Physical review. E, Statistical, nonlinear, and soft matter physics.

Prediction of protein solvent accessibility using fuzzy k-nearest neighbor method

Seung-Yeon Kim, Julian Lee, Jaehyun Sim, 2005, Bioinform..

Exact Enumeration of Protein Conformations from Fragment Assembly

Julian Lee, 2013 .

Protein folding using fragment assembly and physical energy function.

Weontae Lee, Julian Lee, Seung-Yeon Kim, 2006, The Journal of chemical physics.

Measures for the assessment of fuzzy predictions of protein secondary structure

Julian Lee, Julian Lee, 2006, Proteins.

Derivation of Markov processes that violate detailed balance.

Julian Lee, 2017, Physical review. E.

Study on collapse and folding transitions of a lattice protein using exact enumeration

Jae Hwan Lee, Julian Lee, Seung-Yeon Kim, 2015 .

A new method for prediction of RNA secondary structure with pseudoknots, based on helix removal and refinement

Julian Lee, Bayarbaatar Amgalan, 2009 .

Unbiased global optimization of Lennard-Jones clusters for N < or =201 using the conformational space annealing method.

Julian Lee, In-Ho Lee, Jooyoung Lee, 2003, Physical review letters.

The origin of the Poisson distribution in stochastic dynamics of gene expression

Julian Lee, 2022, 2206.01938.

Statistical entropy and AdS / CFT correspondence in BTZ black holes

Julian Lee, Wontae Kim, S. Hyun, 1998, hep-th/9811005.

ADM MASS, BONDI MASS, AND ENERGY CONSERVATION IN TWO-DIMENSIONAL DILATON GRAVITIES

Julian Lee, Won T. Kim, 1995, hep-th/9502078.

Stability analysis of the dilatonic black hole in two-dimensions

Julian Lee, Wontae Kim, Y. Park, 1995, hep-th/9502114.

Disease spreading on fitness-rewired complex networks

Julian Lee, Byungnam Kahng, Jaewan Yoo, 2011 .

Analytic model of the Schottky anomaly and phase transition

Julian Lee, 2015 .

Finite-size phase diagram of the Wako-Saitô-Mu˜noz-Eaton α-helix model

Julian Lee, 2015 .

Low-temperature behavior of the finite-size one-dimensional Ising model and the partition function zeros

Julian Lee, 2014, 1407.6919.

Phase diagram of the Wako-Saitô-Muñoz-Eaton β hairpin model obtained from the partition-function zeros

Julian Lee, 2014, 1407.5681.

Exact partition functions of a polymer on a square lattice up to chain length 38

Jae Hwan Lee, Julian Lee, Seung-Yeon Kim, 2013 .

Exact partition function zeros of a polymer on a simple cubic lattice.

Jae Hwan Lee, Julian Lee, Seung-Yeon Kim, 2012, Physical review. E, Statistical, nonlinear, and soft matter physics.

Exact partition function zeros and the collapse transition of a two-dimensional lattice polymer.

Jae Hwan Lee, Julian Lee, Seung-Yeon Kim, 2010, The Journal of chemical physics.

Schottky anomaly in a repulsive lattice polymer

Jae Hwan Lee, Julian Lee, Seung-Yeon Kim, 2016 .

Hamiltonian formulation of theD-brane action and the light-cone Hamiltonian

Julian Lee, 1997, hep-th/9708093.

Geometrical properties of interior segments of two-dimensional lattice polymer confined in a square box

Jae Hwan Lee, Julian Lee, Seung-Yeon Kim, 2018, Physica A: Statistical Mechanics and its Applications.

Transfer matrix algorithm for computing the exact partition function of a square lattice polymer

Julian Lee, Julian Lee, 2016, Comput. Phys. Commun..

Parallel algorithm for calculation of the exact partition function of a lattice polymer

Seung-Yeon Kim, Jae Hwan Lee, Julian Lee, 2011, Comput. Phys. Commun..

Extracting conformational memory from single-molecule kinetic data.

Steve Pressé, Ken A Dill, Julian Lee, 2013, The journal of physical chemistry. B.

Bifurcations of a Positive Feedback Loop with Partial Binding

Julian Lee, 2020 .

Semiclassical tunneling in 1 + 1 dimensional string theory

Julian Lee, Paul F. Mende, 1992, hep-th/9211049.

DUALITY IN SU(N) × SU(N′) PRODUCT GROUP FROM M THEORY

Julian Lee, S. Sin, 1998, hep-th/9806170.

Protein contact prediction by using information theory

Julian Lee, Jae-Young Byeon, Julian Lee, 2017 .

Protein loop modeling by using fragment assembly and analytical loop closure

Chaok Seok, Hahnbeom Park, Dongseon Lee, 2010, Proteins.

Reply to C. Tsallis' "Conceptual Inadequacy of the Shore and Johnson Axioms for Wide Classes of Complex Systems"

Kingshuk Ghosh, Steve Pressé, Julian Lee, 2015, Entropy.

Nonadditive entropies yield probability distributions with biases not warranted by the data.

Kingshuk Ghosh, Steve Pressé, Ken A Dill, 2013, Physical review letters.

Refinement of protein termini in template‐based modeling using conformational space annealing

Keehyoung Joo, Jooyoung Lee, Chaok Seok, 2011, Proteins.

Mass spectrum of D=11 supergravity on AdS2×S2×T7

Julian Lee, Sangmin Lee, 1999, hep-th/9906105.

The FALC-Loop web server for protein loop modeling

Chaok Seok, Evangelos A. Coutsias, Julian Lee, 2011, Nucleic Acids Res..

Gillespie Simulation of Rare Events in a Genetic Regulatory Network

Jae Jun Lee, Young Jin Kim, Julian Lee, 2019, Journal of the Korean Physical Society.

Conversion of a stable fixed point into a transient peak by stochastic fluctuation in a gene regulatory network

Julian Lee, 2021, Journal of the Korean Physical Society.

Analytic Form of the Quasi-stationary Distribution of a Simple Birth-Death Process

Julian Lee, 2020, Journal of the Korean Physical Society.

Single Molecule Conformational Memory Extraction: P5ab RNA Hairpin

Justin L. MacCallum, Steve Pressé, Ken Dill, 2014, The journal of physical chemistry. B.

A derivation of the master equation from path entropy maximization.

Julian Lee, Steve Pressé, S. Pressé, 2012, The Journal of chemical physics.

Fuzzy k-Nearest Neighbor Method for Protein Secondary Structure Prediction and Its Parallel Implementation

Seung-Yeon Kim, Julian Lee, Jaehyun Sim, 2006, ICIC.

Derivation of a nonequilibrium Markov six-state model in the presence of a time-reversal antisymmetric variable

Julian Lee, 2021, Journal of the Korean Physical Society.

Steady state of an auto-regulatory gene network with partial binding and transcription leakage

Julian Lee, 2021, Journal of the Korean Physical Society.

Analytic Form of the Phase Boundary for a Self-Regulatory Gene Circuit with Baseline Production

Julian Lee, 2019, Journal of the Korean Physical Society.

Tunneling between the giant gravitons in AdS 5 × S 5

Julian Lee, 2000, hep-th/0010191.

Exact partition function zeros of the Wako-Saitô-Muñoz-Eaton protein model.

Julian Lee, 2013, Physical review letters.

Three point functions and the effective lagrangian for the chiral primary fields in D=4 supergravity on AdS2 x S2

Julian Lee, 2000, hep-th/0005081.