Weili Lin

M. Wintermark, Weili Lin, G. Zaharchuk, 2017, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism.

A fast, iterative, partial-fourier technique capable of local phase recovery

Weili Lin, E. Haacke, E. M. Haacke, 1991 .

Associations between Tumor Vascularity, Vascular Endothelial Growth Factor Expression and PET/MRI Radiomic Signatures in Primary Clear-Cell–Renal-Cell-Carcinoma: Proof-of-Concept Study

E. Wallen, Weili Lin, D. Shen, 2017, Scientific Reports.

Learning‐based subject‐specific estimation of dynamic maps of cortical morphology at missing time points in longitudinal infant studies

Gang Li, Weili Lin, D. Shen, 2016, Human brain mapping.

Regional Gray Matter Growth, Sexual Dimorphism, and Cerebral Asymmetry in the Neonatal Brain

Rebecca C. Knickmeyer, J. K. Smith, J. Lieberman, 2007, The Journal of Neuroscience.

Prenatal Drug Exposure Affects Neonatal Brain Functional Connectivity

Andrew P. Salzwedel, G. Gerig, Weili Lin, 2015, The Journal of Neuroscience.

Spatial Patterns, Longitudinal Development, and Hemispheric Asymmetries of Cortical Thickness in Infants from Birth to 2 Years of Age

J. Gilmore, Gang Li, Weili Lin, 2015, The Journal of Neuroscience.

Mapping Longitudinal Development of Local Cortical Gyrification in Infants from Birth to 2 Years of Age

J. Gilmore, Gang Li, Weili Lin, 2014, The Journal of Neuroscience.

Probabilistic Air Segmentation and Sparse Regression Estimated Pseudo CT for PET/MR Attenuation Correction.

Meher R. Juttukonda, Yueh Z. Lee, Yasheng Chen, 2015, Radiology.

Evidence on the emergence of the brain's default network from 2-week-old to 2-year-old healthy pediatric subjects

Dinggang Shen, John H. Gilmore, Hongtu Zhu, 2009, Proceedings of the National Academy of Sciences.

Cerebral Cortex doi:10.1093/cercor/bhs043 Cerebral Cortex Advance Access published February 24, 2012 The Synchronization within and Interaction between the Default and Dorsal Attention Networks in Early Infancy

Dinggang Shen, Hongtu Zhu, Wei Gao, 2022 .

Functional Brain Parcellations of the Infant Brain and the Associated Developmental Trends

Feng Shi, Wei Gao, Weili Lin, 2018, Cerebral cortex.

Mapping longitudinal hemispheric structural asymmetries of the human cerebral cortex from birth to 2 years of age.

Dinggang Shen, Li Wang, Feng Shi, 2014, Cerebral cortex.

Functional Network Development During the First Year: Relative Sequence and Socioeconomic Correlations.

Wei Gao, Weili Lin, Sarael Alcauter, 2015, Cerebral cortex.

Biomechanical Analysis of Normal Brain Development during the First Year of Life Using Finite Strain Theory

Weili Lin, D. Shen, Li Wang, 2016, Scientific Reports.

Development of human brain cortical network architecture during infancy

John H. Gilmore, Wei Gao, Weili Lin, 2014, Brain Structure and Function.

Developmental topography of cortical thickness during infancy

Dinggang Shen, Chunfeng Lian, Weili Lin, 2019, Proceedings of the National Academy of Sciences.

Intrinsic Regression Models for Positive-Definite Matrices With Applications to Diffusion Tensor Imaging

Hongtu Zhu, Joseph G Ibrahim, Weili Lin, 2009, Journal of the American Statistical Association.

Individual identification and individual variability analysis based on cortical folding features in developing infant singletons and twins

J. Gilmore, Gang Li, Weili Lin, 2020, Human brain mapping.

A computational growth model for measuring dynamic cortical development in the first year of life.

Dinggang Shen, Li Wang, Weili Lin, 2012, Cerebral cortex.

Cortical thickness and surface area in neonates at high risk for schizophrenia

Dinggang Shen, John H. Gilmore, Hongtu Zhu, 2014, Brain Structure and Function.

Intersubject Variability of and Genetic Effects on the Brain's Functional Connectivity during Infancy

Hongtu Zhu, Wei Gao, Weili Lin, 2014, The Journal of Neuroscience.

Frontal parietal control network regulates the anti‐correlated default and dorsal attention networks

Wei Gao, Weili Lin, Weili Lin, 2012, Human brain mapping.

Network-Level Connectivity Dynamics of Movie Watching in 6-Year-Old Children

John H. Gilmore, Wei Gao, Weili Lin, 2015, Front. Hum. Neurosci..

Initial Assessment of 3D Magnetic Resonance Fingerprinting (MRF) Towards Quantitative Brain Imaging for Radiation Therapy.

Yong Chen, Weili Lin, J. Lian, 2019, Medical physics.

Deep Learning for Fast and Spatially Constrained Tissue Quantification From Highly Accelerated Data in Magnetic Resonance Fingerprinting

Qian Wang, Mingxia Liu, Yong Chen, 2019, IEEE Transactions on Medical Imaging.

An Independent Component Analysis Approach for Minimizing Effects of Recirculation in Dynamic Susceptibility Contrast Magnetic Resonance Imaging

Hamid Krim, Weili Lin, Hongyu An, 2007, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism.

White Matter Heritability Using Diffusion Tensor Imaging in Neonatal Brains

Martin Styner, Weili Lin, Xiujuan Geng, 2012, Twin Research and Human Genetics.

The degree to which genes and environment generate individual differences in early brain development is of fundamental importance in understanding developmental trajectories during childhood , and may help the early identification and prevention of various neurodevelopmental disorders

M. Styner, J. Gilmore, Weili Lin, 2012 .

Use of High Resolution 3D Diffusion Tensor Imaging to Study Brain White Matter Development in Live Neonatal Rats

Ipek Oguz, Weili Lin, Martin A. Styner, 2011, Front. Psychiatry.

Early-Life Nutrition and Cognitive Development: Imaging Approaches.

Gang Li, Weili Lin, D. Shen, 2019, Nestle Nutrition Institute workshop series.

Regularization of diffusion tensor field using coupled robust anisotropic diffusion filters

Weili Lin, D. Shen, P. Yap, 2009, IEEE Computer Society Conference on Computer Vision and Pattern Recognition workshops.

Diffusion tensor imaging based network analysis detects alterations of neuroconnectivity in patients with clinically early relapsing‐remitting multiple sclerosis

Yasheng Chen, Weili Lin, D. Shen, 2013, Human brain mapping.

Absolute Oxygenation Metabolism Measurements Using Magnetic Resonance Imaging

H. An, Weili Lin, Qingwei Liu, 2011, The open neuroimaging journal.

Oxygen Metabolism in Ischemic Stroke Using Magnetic Resonance Imaging

Yasheng Chen, H. An, Weili Lin, 2012, Translational Stroke Research.

Impact of intravascular signal on quantitative measures of cerebral oxygen extraction and blood volume under normo‐ and hypercapnic conditions using an asymmetric spin echo approach

Weili Lin, Hongyu An, H. An, 2003, Magnetic resonance in medicine.

Cerebral oxygen extraction fraction and cerebral venous blood volume measurements using MRI: Effects of magnetic field variation

Weili Lin, Hongyu An, H. An, 2002, Magnetic resonance in medicine.

Mesoporous silica nanospheres as highly efficient MRI contrast agents.

Weili Lin, Hongyu An, H. An, 2008, Journal of the American Chemical Society.

Abnormal Vessel Tortuosity as a Marker of Treatment Response of Malignant Gliomas: Preliminary Report

Guido Gerig, Inkyung Jung, Weili Lin, 2004, Technology in cancer research & treatment.

Evaluation of PET/MRI for Tumor Volume Delineation for Head and Neck Cancer

Dinggang Shen, Weili Lin, Kelei He, 2017, Front. Oncol..

The Bayesian Covariance Lasso.

Hongtu Zhu, Joseph G Ibrahim, Weili Lin, 2013, Statistics and its interface.

Frequency of spontaneous BOLD signal shifts during infancy and correlates with cognitive performance

John H. Gilmore, Weili Lin, Sarael Alcauter, 2014, Developmental Cognitive Neuroscience.

Multifunctional mesoporous silica nanospheres with cleavable Gd(III) chelates as MRI contrast agents: synthesis, characterization, target-specificity, and renal clearance.

Weili Lin, Hongyu An, Juan L. Vivero-Escoto, 2011, Small.

Contrast Agents

Weili Lin, A. Çelik, 2002 .

More insights into early brain development through statistical analyses of eigen-structural elements of diffusion tensor imaging using multivariate adaptive regression splines

J. Gilmore, Yasheng Chen, H. An, 2013, Brain Structure and Function.

The Potential Roles of 18F-FDG-PET in Management of Acute Stroke Patients

Weili Lin, A. Bunevičius, Hong Yuan, 2013, BioMed research international.

TIMER: Tensor Image Morphing for Elastic Registration

Weili Lin, D. Shen, P. Yap, 2009, NeuroImage.

Cortical enhanced tissue segmentation of neonatal brain

G. Gerig, Weili Lin, D. Shen, 2009 .

The emergence of a functionally flexible brain during early infancy

Jessica R. Cohen, P. Mucha, Han Zhang, 2020, Proceedings of the National Academy of Sciences.

Probabilistic air s egmentation and s parse r egression esti mated Pseudo cT for P eT/Mr attenuation correction 1

Yueh Z. Lee, Yasheng Chen, B. Rubin, 2015 .

Common variants contribute to intrinsic functional architecture of human brain

Weili Lin, Hongtu Zhu, Yun Li, 2020 .

Common variants contribute to intrinsic human brain functional networks

Weili Lin, Hongtu Zhu, Yun Li, 2020, bioRxiv.

Development of Amygdala Functional Connectivity During Infancy and Its Relationship With 4-Year Behavioral Outcomes.

Andrew P. Salzwedel, Rebecca L. Stephens, J. Gilmore, 2019, Biological psychiatry. Cognitive neuroscience and neuroimaging.

Practical consideration for 3T imaging.

J. Gilmore, G. Gerig, Yasheng Chen, 2003, Magnetic resonance imaging clinics of North America.

Signal Evolution and Infarction Risk for Apparent Diffusion Coefficient Lesions in Acute Ischemic Stroke Are Both Time- and Perfusion-Dependent

H. An, Weili Lin, W. Powers, 2011, Stroke.

Imaging Concepts

Weili Lin, 2005 .

Multi-Site Infant Brain Segmentation Algorithms: The iSeg-2019 Challenge pdf

M.N.S. Swamy, Jun Ma, M. Omair Ahmad, 2020, IEEE Transactions on Medical Imaging.

MR imaging of oxygen extraction and neurovascular coupling.

Yasheng Chen, H. An, Weili Lin, 2013, Stroke.

Morphology of perivascular spaces and enclosed blood vessels in young to middle-aged healthy adults at 7T: Dependences on age, brain region, and breathing gas

Koji Yamashita, Chunfeng Lian, Dinggang Shen, 2020, NeuroImage.

Review Article The Potential Roles of 18 F-FDG-PET in Management of Acute Stroke Patients

Weili Lin, A. Bunevičius, Hong Yuan, 2013 .

Safety and feasibility of high-pressure transvenous limb perfusion with 0.9% saline in human muscular dystrophy.

H. An, Weili Lin, W. Powers, 2012, Molecular therapy : the journal of the American Society of Gene Therapy.

MR imaging enhancement patterns as predictors of hemorrhagic transformation in acute ischemic stroke.

Yueh Z. Lee, Weili Lin, Chung Y. Hsu, 2003, AJNR. American journal of neuroradiology.

Deep attentive spatio-temporal feature learning for automatic resting-state fMRI denoising

Weili Lin, Han Zhang, S. Hung, 2022, NeuroImage.

Magnetic resonance imaging of guinea pig cochlea after vasopressin-induced or surgically induced endolymphatic hydrops

Weili Lin, C. Zdanski, Allen F. Marshall, 2010, Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.

ORIGINAL RESEARCH Malignancy-Associated Vessel Tortuosity: A Computer-Assisted, MR Angiographic Study of Choroid Plexus Carcinoma in Genetically Engineered Mice

D. Zeng, Weili Lin, E. Bullitt, 2006 .

Spin Density, T1, T2, T2* Relaxation and Bloch Equations

H. An, Weili Lin, 2001 .

Association of anterior cingulate cortex (ACC) activation with psychoscial distress and pain reports

B. Vogt, Weili Lin, D. Drossman, 2003 .

IBS diagnosis and a history of abuse have synergistic effects on the perigenual cingulate activation in response to rectal distention

B. Vogt, Weili Lin, D. Drossman, 2003 .

Spatiotemporal Uptake Characteristics of [18]F-2-Fluoro-2-Deoxy-D-Glucose in a Rat Middle Cerebral Artery Occlusion Model

H. An, Weili Lin, D. Shen, 2013, Stroke.

Prospective motion correction and automatic segmentation of penetrating arteries in phase contrast MRI at 7 T

Weili Lin, X. Zong, Jordan Jimenez, 2022, Magnetic Resonance in Medicine.

Quantitative measurements of cerebral metabolic rate of oxygen using MRI: a volunteer study

H. An, Weili Lin, A. Çelik, 2014 .

Measuring Tortuosity of the Intracerebral Vasculature

Guido Gerig, Stephen R. Aylward, Weili Lin, 2003, IEEE Trans. Medical Imaging.

Prenatal isolated mild ventriculomegaly is associated with persistent ventricle enlargement at ages 1 and 2.

Martin Styner, Guido Gerig, Weili Lin, 2012, Early human development.

Twin-Singleton Differences in Neonatal Brain Structure

Martin Styner, Guido Gerig, Weili Lin, 2011, Twin Research and Human Genetics.

Prenatal Mild Ventriculomegaly Predicts Abnormal Development of the Neonatal Brain

John H. Gilmore, Guido Gerig, Robert M. Hamer, 2008, Biological Psychiatry.

Brain Maturation of Newborns and Infants

J. Gilmore, G. Gerig, Weili Lin, 2011 .

Prenatal and Neonatal Brain Structure and White Matter Maturation in Children at High Risk for Schizophrenia AJP in Advance

Martin Styner, Guido Gerig, Weili Lin, 2010 .

Reconstruction in deep learning of highly under-sampled T2-weighted image with T1-weighted image.

Dinggang Shen, Qian Wang, Yong Chen, 2018, Proceedings of the International Society for Magnetic Resonance in Medicine ... Scientific Meeting and Exhibition. International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition.

Correction for Evidence on the emergence of the brain's default network from 2-week-old to 2-year-old healthy pediatric subjects, by Wei Gao, Hongtu Zhu, Kelly S. Giovanello, J. Keith

Dinggang Shen, John H. Gilmore, Hongtu Zhu, 2009 .

Brain Functional Networks in the Developing Brain Using Resting BOLD

Dinggang Shen, John H. Gilmore, Weili Lin, 2014 .

Publisher Correction: Learning MRI artefact removal with unpaired data

Dinggang Shen, Kim-Han Thung, Pew-Thian Yap, 2021, Nat. Mach. Intell..

Discovering cortical sulcal folding patterns in neonates using large‐scale dataset

J. Gilmore, Gang Li, Weili Lin, 2018, Human brain mapping.

Spatial distribution and longitudinal development of deep cortical sulcal landmarks in infants

Dinggang Shen, John H. Gilmore, Yu Meng, 2014, NeuroImage.

Evidence on the emergence of the brain's default network from 2-week-old to 2-year-old healthy pediatric subjects

Dinggang Shen, John H. Gilmore, Hongtu Zhu, 2009, Proceedings of the National Academy of Sciences.

Temporal and Spatial Evolution of Brain Network Topology during the First Two Years of Life

Dinggang Shen, John H. Gilmore, Hongtu Zhu, 2011, PloS one.

Resting-state functional MRI studies on infant brains: A decade of gap-filling efforts

Dinggang Shen, Han Zhang, Weili Lin, 2019, NeuroImage.

Erratum to "Predicting Infant Cortical Surface Development Using a 4D Varifold-based Learning Framework and Local Topography-based Shape Morphing" [Med. Image Anal. 28 (2016)1-12]

Dinggang Shen, Islem Rekik, Weili Lin, 2017, Medical Image Anal..

Multivariate Longitudinal Shape Analysis of Human Lateral Ventricles during the First Twenty-Four Months of Life

Dinggang Shen, Martin Styner, Hongtu Zhu, 2014, PloS one.

Corrections to "Deep Learning Based Multi-Modal Fusion for Fast MR Reconstruction"

Lei Xiang, Qian Wang, Yiqiang Zhan, 2020, IEEE Trans. Biomed. Eng..

University of Dundee Estimation of Shape and Growth Brain Network Atlases for Connectomic Brain Mapping in Developing Infants Rekik,

Weili Lin, D. Shen, 2018 .

Functional Connectivity of the Infant Human Brain

John H. Gilmore, Wei Gao, Weili Lin, 2016, The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry.

Hippocampal Sulcus Remnant: Common Finding in Nonelderly Adults on Ultra-High-Resolution 7T Magnetic Resonance Imaging.

Weili Lin, K. Yamashita, M. Castillo, 2019, Journal of computer assisted tomography.

Velocity and Diameter Measurements of Penetrating Arteries by Model Based Analysis of Complex Difference Images in Phase Contrast MRI

Weili Lin, X. Zong, 2018, bioRxiv.

Analysis of White Matter Fiber Tracts via Fiber Clustering and Parametrization

J. Gilmore, I. Corouge, G. Gerig, 2004 .

Functional Connectivity Magnetic Resonance Imaging Reveals Cortical Functional Connectivity in the Developing Brain

J. K. Smith, M. Styner, J. Gilmore, 2008 .

Erratum: Deep Learning for Fast and Spatially Constrained Tissue Quantification from Highly Accelerated Data in Magnetic Resonance Fingerprinting (IEEE Transactions on Medical Imaging (2019) 38:10 (2364-2374) DOI: 10.1109/tmi.2019.2899328)

Qian Wang, Dinggang Shen, Qian Zhang, 2020 .

Altered neural flexibility in children with attention-deficit/hyperactivity disorder

Jessica R. Cohen, Weili Lin, Hongtu Zhu, 2022, Molecular Psychiatry.

High-Pressure Transvenous Perfusion of the Upper Extremity in Human Muscular Dystrophy: A Safety Study with 0.9% Saline.

Yasheng Chen, H. An, Weili Lin, 2015, Human gene therapy.

Principles of magnetic resonance imaging: a signal processing perspective [Book Review]

Weili Lin, Weili Lin, 2000 .

Quantitative accuracy of positron emission tomography/magnetic resonance and positron emission tomography/computed tomography for cervical cancer

Weili Lin, J. Fielding, P. Gehrig, 2018, World Journal of Nuclear Medicine.

Joint analyses of human milk fatty acids, phospholipids, and choline in association with cognition and temperament traits during the first 6 months of life

Weili Lin, Hongtu Zhu, H. Hazlett, 2022, Frontiers in Nutrition.

Jointly analyzing the association of human milk nutrients with cognition and temperament traits during the first 6 months of life

Weili Lin, Hongtu Zhu, H. Hazlett, 2022, bioRxiv.

Erratum to Longitudinally guided level sets for consistent tissue segmentation of neonates. [Hum Brain Mapp 34, 956-972]

J. Gilmore, Weili Lin, D. Shen, 2013 .

Acute stroke imaging research roadmap II | NOVA. The University of Newcastle's Digital Repository

Keith W. Muir, Geoffrey A. Donnan, Joseph P. Broderick, 2013 .

Pilot Study of [18F] Fluorodeoxyglucose Positron Emission Tomography (FDG-PET)/Magnetic Resonance Imaging (MRI) for Staging of Muscle-invasive Bladder Cancer (MIBC).

Ronald C. Chen, E. Wallen, Weili Lin, 2020, Clinical genitourinary cancer.

MRI Findings in Third-Trimester Opioid-Exposed Fetuses With Focus on Brain Measurements: A Prospective Multicenter Case-Control Study.

J. Vannest, S. Merhar, Weili Lin, 2022, AJR. American journal of roentgenology.

Vascular Permeability Precedes Spontaneous Intracerebral Hemorrhage in Stroke-Prone Spontaneously Hypertensive Rats

Weili Lin, Chung Y. Hsu, J. Lee, 2007, Stroke.

Tissue ablation using multi-frequency focused ultrasound

Xiaoning Jiang, Weili Lin, Sijia Guo, 2011, 2011 IEEE International Ultrasonics Symposium.

Effect of abuse history on pain reports and brain responses to aversive visceral stimulation: an FMRI study.

Weili Lin, D. Drossman, W. Whitehead, 2008, Gastroenterology.

Hybrid PET/MR: State-of-the-Art and Future Challenges.

Yueh Z. Lee, Weili Lin, S. Hung, 2017, Magnetic resonance imaging clinics of North America.

Hybrid silica nanoparticles for multimodal imaging.

Weili Lin, Hongyu An, H. An, 2007, Angewandte Chemie.

Longitudinally guided level sets for consistent tissue segmentation of neonates

J. Gilmore, Weili Lin, D. Shen, 2013 .

Temporal Relationship Between Apparent Diffusion Coefficient and Absolute Measurements of Cerebral Blood Flow in Acute Stroke Patients

Weili Lin, Jin-Moo Lee, Chung Y Hsu, 2003, Stroke.

Abstract 12: MR-Oxygen Metabolic Index (OMI) is Superior To Diffusion-Perfusion Mismatch For Predicting Tissue Fate in the Ischemic Penumbra

Yasheng Chen, H. An, Weili Lin, 2013, Stroke.

Development of human brain cortical network architecture during infancy

J. K. Smith, J. Gilmore, Weili Lin, 2014, Brain Structure and Function.

Thrombolysis enhanced by dual-frequency highintensity focused ultrasound

Xiaoning Jiang, Weili Lin, Yun Jing, 2014, 2014 IEEE International Ultrasonics Symposium.

Local polynomial regression for symmetric positive definite matrices

J. S. Marron, Weili Lin, Hongtu Zhu, 2012, Journal of the Royal Statistical Society. Series B, Statistical methodology.

The potential of infant fMRI research and the study of early life stress as a promising exemplar

Wei Gao, Weili Lin, Damien A. Fair, 2014, Developmental Cognitive Neuroscience.

The maturation and cognitive relevance of structural brain network organization from early infancy to childhood

Weili Lin, Zhengwang Wu, Margaret A. Sheridan, 2021, NeuroImage.

Construction of 4D infant cortical surface atlases with sharp folding patterns via spherical patch‐based group‐wise sparse representation

Dinggang Shen, Weili Lin, Zhengwang Wu, 2019, Human brain mapping.

Predicting Alzheimer's Disease Using Combined Imaging-Whole Genome SNP Data.

Hongtu Zhu, Yong Fan, Weili Lin, 2015, Journal of Alzheimer's disease : JAD.

A Critical Proton MR Spectroscopy Marker of Alzheimer's Disease Early Neurodegenerative Change: Low Hippocampal NAA/Cr Ratio Impacts APOE ɛ4 Mexico City Children and Their Parents.

Weili Lin, Martin Styner, Valerie Jewells, 2015, Journal of Alzheimer's disease : JAD.

Sex differences in grey matter atrophy patterns among AD and aMCI patients: Results from ADNI

Dinggang Shen, Wei Gao, Yaping Wang, 2011, NeuroImage.

Lateral ventricle morphology analysis via mean latitude axis

Martin Styner, Beatriz Paniagua, Weili Lin, 2013, Medical Imaging.

A unified optimization approach for diffusion tensor imaging technique

Wei Gao, Hongtu Zhu, Weili Lin, 2009, NeuroImage.

Brain functional development separates into three distinct time periods in the first two years of life

Weili Lin, Tengfei Li, Weiyan Yin, 2019, NeuroImage.

4D Multi-Modality Tissue Segmentation of Serial Infant Images

Dinggang Shen, John H. Gilmore, Li Wang, 2012, PloS one.

Automatic segmentation of MR images of the developing newborn brain

John H. Gilmore, Guido Gerig, Weili Lin, 2005, Medical Image Anal..

Common variants in psychiatric risk genes predict brain structure at birth.

Martin Styner, Hongtu Zhu, Weili Lin, 2014, Cerebral cortex.

Segmentation of neonatal brain MR images using patch-driven level sets

Yaozong Gao, Dinggang Shen, John H. Gilmore, 2014, NeuroImage.

LABEL: Pediatric brain extraction using learning-based meta-algorithm

Dinggang Shen, John H. Gilmore, Li Wang, 2012, NeuroImage.

CENTS: Cortical enhanced neonatal tissue segmentation

Dinggang Shen, Feng Shi, Yong Fan, 2011, Human brain mapping.

Spatial-Temporal Constraint for Segmentation of Serial Infant Brain MR Images

Dinggang Shen, John H. Gilmore, Feng Shi, 2010, MIAR.

Construction of multi-region-multi-reference atlases for neonatal brain MRI segmentation

Dinggang Shen, John H. Gilmore, Yong Fan, 2010, NeuroImage.

Neonatal brain MRI segmentation by building multi-region-multi-reference atlases

Dinggang Shen, John H. Gilmore, Yong Fan, 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Neonatal brain image segmentation in longitudinal MRI studies

Dinggang Shen, John H. Gilmore, Yong Fan, 2010, NeuroImage.

Cortical enhanced tissue segmentation of neonatal brain MR images acquired by a dedicated phased array coil

Dinggang Shen, Lawrence L. Wald, Feng Shi, 2009, 2009 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops.

Brain tissue segmentation of neonatal MR images using a longitudinal subject-specific probabilistic atlas

Dinggang Shen, John H. Gilmore, Yong Fan, 2009, Medical Imaging.

STGP: Spatio-temporal Gaussian process models for longitudinal neuroimaging data

Martin Styner, Chao Huang, Weili Lin, 2016, NeuroImage.

Estimation of Brain Network Atlases Using Diffusive-Shrinking Graphs: Application to Developing Brains

Dinggang Shen, Islem Rekik, Weili Lin, 2017, IPMI.

Imaging Oxygen Metabolism in Acute Stroke Using MRI

Yasheng Chen, H. An, Weili Lin, 2014, Current Radiology Reports.

Oxygen Metabolism in Ischemic Stroke Using Magnetic Resonance Imaging

Yasheng Chen, H. An, Weili Lin, 2012, Translational Stroke Research.

Simulation of Brain Mass Effect with an Arbitrary Lagrangian and Eulerian FEM

Dinggang Shen, Hongtu Zhu, Weili Lin, 2010, MICCAI.

An independent component analysis approach to perfusion weighted imaging

Hamid Krim, Yang Wu, Weili Lin, 2005, Proceedings. (ICASSP '05). IEEE International Conference on Acoustics, Speech, and Signal Processing, 2005..

Multi-task prediction of infant cognitive scores from longitudinal incomplete neuroimaging data

Dinggang Shen, Yu Meng, Ehsan Adeli, 2019, NeuroImage.

Analyzing attributes of vessel populations

Stephen R. Aylward, Weili Lin, Elizabeth Bullitt, 2005, Medical Image Anal..

Statistical Topological Data Analysis - A Kernel Perspective

Ulrich Bauer, Marc Niethammer, Roland Kwitt, 2015, NIPS.

Detection of Azoxystrobin Fungicide and Metabolite Azoxystrobin-Acid in Pregnant Women and Children, Estimation of Daily Intake, and Evaluation of Placental and Lactational Transfer in Mice

Weili Lin, M. Zylka, E. McCoy, 2022, Environmental health perspectives.

Construction of Spatiotemporal Infant Cortical Surface Functional Templates

Ying Huang, Dinggang Shen, Zhengwang Wu, 2020, MICCAI.

Common variants contribute to intrinsic human brain functional networks

Weili Lin, Yun Li, J. Stein, 2022, Nature Genetics.

Cortical Surface-Based Construction of Individual Structural Network with Application to Early Brain Development Study

Dinggang Shen, John H. Gilmore, Yu Meng, 2015, MICCAI.

Expression of p16Ink4a compensates for p18Ink4c loss in cyclin-dependent kinase 4/6-dependent tumors and tissues.

D. Carrasco, K. Ligon, Weili Lin, 2007, Cancer research.

Alternate Metabolic Programs Define Regional Variation of Relevant Biological Features in Renal Cell Carcinoma Progression

Weili Lin, Julia R Fielding, Joel S Parker, 2016, Clinical Cancer Research.

Exploring folding patterns of infant cerebral cortex based on multi-view curvature features: Methods and applications

Dinggang Shen, Zhengwang Wu, Yu Meng, 2019, NeuroImage.

Spatial distribution and longitudinal development of deep cortical sulcal landmarks in infants

Dinggang Shen, John H. Gilmore, Yu Meng, 2014, NeuroImage.

Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations

Kim-Han Thung, Siyuan Liu, Dinggang Shen, 2020, IEEE Transactions on Medical Imaging.

Hemodynamic and permeability changes in posterior reversible encephalopathy syndrome measured by dynamic susceptibility perfusion-weighted MR imaging.

Yueh Z. Lee, Weili Lin, M. Castillo, 2005, AJNR. American journal of neuroradiology.

Discordance of prenatal and neonatal brain development in twins.

J. Gilmore, C. Kang, R. Hamer, 2009, Early human development.

Quantitative tract-based white matter development from birth to age 2years

Martin Styner, John H. Gilmore, Guido Gerig, 2012, NeuroImage.

Multiscale adaptive regression models for neuroimaging data

Dinggang Shen, Hongtu Zhu, Joseph G Ibrahim, 2011, Journal of the Royal Statistical Society. Series B, Statistical methodology.

FADTTS: Functional analysis of diffusion tensor tract statistics

Martin Styner, John H. Gilmore, Guido Gerig, 2011, NeuroImage.

FRATS: Functional Regression Analysis of DTI Tract Statistics

Martin Styner, John H. Gilmore, Hongtu Zhu, 2010, IEEE Transactions on Medical Imaging.

RADTI: regression analyses of diffusion tensor images

Dinggang Shen, Hongtu Zhu, Weili Lin, 2009, Medical Imaging.

Regression Models for Identifying Noise Sources in Magnetic Resonance Images

J. Ibrahim, B. Peterson, Yasheng Chen, 2009, Journal of the American Statistical Association.

Neuroimaging in human immunodeficiency virus infection

Yasheng Chen, H. An, Weili Lin, 2004, Journal of Neuroimmunology.

Alterations of brain activity associated with resolution of emotional distress and pain in a case of severe irritable bowel syndrome.

B. Vogt, Weili Lin, D. Drossman, 2003, Gastroenterology.

Computerized assessment of vessel morphological changes during treatment of glioblastoma multiforme: Report of a case imaged serially by MRA over four years

Stephen R. Aylward, Donglin Zeng, Elizabeth Bullitt, 2009, NeuroImage.

Blood vessel morphologic changes depicted with MR angiography during treatment of brain metastases: a feasibility study.

Weili Lin, Donglin Zeng, Elizabeth Bullitt, 2007, Radiology.

Reference-Relation Guided Autoencoder with Deep CCA Restriction for Awake-to-Sleep Brain Functional Connectome Prediction

Zhengwang Wu, Weiyan Yin, Li Wang, 2021, MICCAI.

First-year development of modules and hubs in infant brain functional networks

Dinggang Shen, Jun Zhang, Han Zhang, 2019, NeuroImage.

Multi-layer Large-Scale Functional Connectome Reveals Infant Brain Developmental Patterns

Dinggang Shen, Han Zhang, Weili Lin, 2018, MICCAI.

Longitudinal Study of the Emerging Functional Connectivity Asymmetry of Primary Language Regions during Infancy

Wei Gao, Weili Lin, Weili Lin, 2016, The Journal of Neuroscience.

LINKS: Learning-based multi-source IntegratioN frameworK for Segmentation of infant brain images

Yaozong Gao, Dinggang Shen, John H. Gilmore, 2014, NeuroImage.

Development Trends of White Matter Connectivity in the First Years of Life

Dinggang Shen, John H. Gilmore, Yong Fan, 2011, PloS one.

Multivariate Varying Coefficient Models for DTI Tract Statistics

Martin Styner, John H. Gilmore, Hongtu Zhu, 2010, MICCAI.

A Note on the Validity of Statistical Bootstrapping for Estimating the Uncertainty of Tensor Parameters in Diffusion Tensor Images

Hongtu Zhu, Ying Yuan, Weili Lin, 2008, IEEE Transactions on Medical Imaging.

TwinMARM: Two-Stage Multiscale Adaptive Regression Methods for Twin Neuroimaging Data

Martin Styner, John H. Gilmore, Hongtu Zhu, 2011, IEEE Transactions on Medical Imaging.

Multiscale Adaptive Generalized Estimating Equations for Longitudinal Neuroimaging Data ☆

Dinggang Shen, Martin Styner, John H. Gilmore, 2022 .

MARM: Multiscale Adaptive Regression Models for Neuroimaging Data

Dinggang Shen, Hongtu Zhu, Weili Lin, 2009, IPMI.

Genetic Influences on the Developing Young Brain and Risk for Neuropsychiatric Disorders

Jessica B. Girault, J. Piven, J. Gilmore, 2023, Biological Psychiatry.

r Human Brain Mapping 000:000–000 (2010) r Genetic and Environmental Contributions to Neonatal Brain Structure: A Twin Study*

Martin Styner, Guido Gerig, Weili Lin, 2022 .

Generation of Infant-dedicated Fine-grained Functional Parcellation Maps of Cerebral Cortex

Gang Li, Weili Lin, Han Zhang, 2021, bioRxiv.

Surface-constrained volumetric registration for the early developing brain

Dinggang Shen, Gang Li, Li Wang, 2019, Medical Image Anal..

Topological correction of infant white matter surfaces using anatomically constrained convolutional neural network

Daoqiang Zhang, Liang Sun, Chunfeng Lian, 2019, NeuroImage.

Computational neuroanatomy of baby brains: A review

Dinggang Shen, Yu Meng, Li Wang, 2019, NeuroImage.

A computational method for longitudinal mapping of orientation‐specific expansion of cortical surface in infants

Dinggang Shen, Li Wang, Caiming Zhang, 2018, Medical Image Anal..

Anatomy‐guided joint tissue segmentation and topological correction for 6‐month infant brain MRI with risk of autism

Dinggang Shen, Ehsan Adeli, Li Wang, 2018, Human brain mapping.

Can we predict subject‐specific dynamic cortical thickness maps during infancy from birth?

Yaozong Gao, Dinggang Shen, Islem Rekik, 2017, Human brain mapping.

Measuring the dynamic longitudinal cortex development in infants by reconstruction of temporally consistent cortical surfaces

Dinggang Shen, John H. Gilmore, Li Wang, 2014, NeuroImage.

Longitudinal regression analysis of spatial–temporal growth patterns of geometrical diffusion measures in early postnatal brain development with diffusion tensor imaging

Dinggang Shen, John H. Gilmore, Hongtu Zhu, 2011, NeuroImage.

Comparisons of regional white matter diffusion in healthy neonates and adults performed with a 3.0-T head-only MR imaging unit.

Guido Gerig, Weili Lin, John H Gilmore, 2003, Radiology.

The UNC/UMN Baby Connectome Project (BCP): An overview of the study design and protocol development

Dinggang Shen, John H. Gilmore, Essa Yacoub, 2019, NeuroImage.

Spatio‐angular consistent construction of neonatal diffusion MRI atlases

Dinggang Shen, Feng Shi, Pew-Thian Yap, 2017, Human brain mapping.

Hierarchical and symmetric infant image registration by robust longitudinal-example-guided correspondence detection.

Dinggang Shen, Qian Wang, Qianjin Feng, 2015, Medical physics.

Neonatal atlas construction using sparse representation

Dinggang Shen, Guorong Wu, Li Wang, 2014, Human brain mapping.

SPHERE: SPherical Harmonic Elastic REgistration of HARDI data

Dinggang Shen, John H. Gilmore, Yang Yang, 2011, NeuroImage.

F-TIMER: Fast Tensor Image Morphing for Elastic Registration

Dinggang Shen, Hongtu Zhu, Guorong Wu, 2010, IEEE Transactions on Medical Imaging.

Associations between white matter microstructure and infants' working memory

Martin Styner, John H. Gilmore, Guido Gerig, 2013, NeuroImage.

3 Tesla magnetic resonance imaging of the brain in newborns

John H. Gilmore, Guido Gerig, Weili Lin, 2004, Psychiatry Research: Neuroimaging.

The effects of healthy aging on intracerebral blood vessels visualized by magnetic resonance angiography

Stephen R. Aylward, Donglin Zeng, Elizabeth Bullitt, 2010, Neurobiology of Aging.

Multi-layer Temporal Network Analysis Reveals Increasing Temporal Reachability and Spreadability in the First Two Years of Life

Gang Pan, Han Zhang, Dinggang Shen, 2019, MICCAI.

Fast Tensor Image Morphing for Elastic Registration

Dinggang Shen, Hongtu Zhu, Guorong Wu, 2009, MICCAI.

TIMER: Tensor Image Morphing for Elastic Registration

Dinggang Shen, Hongtu Zhu, Guorong Wu, 2009, NeuroImage.

Altered Structural Connectivity in Neonates at Genetic Risk for Schizophrenia: a Combined Study Using Morphological and White Matter Networks

Dinggang Shen, John H. Gilmore, Wei Gao, 2022 .

Multivariate Network-Level Approach to Detect Interactions between Large-Scale Functional Systems

Wei Gao, Hongtu Zhu, Weili Lin, 2010, MICCAI.

Prediction of standard-dose brain PET image by using MRI and low-dose brain [18F]FDG PET images.

Yaozong Gao, Dinggang Shen, Feng Shi, 2015, Medical physics.

Preexisting Statin Use Is Associated With Greater Reperfusion in Hyperacute Ischemic Stroke

H. An, Weili Lin, G. D'Angelo, 2011, Stroke.

Thrombolysis using multi-frequency high intensity focused ultrasound at MHz range: an in vitro study

Xiaoning Jiang, Weili Lin, Yun Jing, 2015, Physics in medicine and biology.

Charting Development-Based Joint Parcellation Maps Of Human and Macaque Brains During Infancy

Dinggang Shen, Caiming Zhang, Weili Lin, 2019, 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019).

Investigating magnetic susceptibility of human knee joint at 7 Tesla

Weili Lin, Xiaopeng Zong, Hongjiang Wei, 2017, Magnetic resonance in medicine.

Intrinsic Regression Models for Manifold-Valued Data.

Martin Styner, Hongtu Zhu, Joseph G Ibrahim, 2009, Journal of the American Statistical Association.

Navigator-Free Submillimeter Diffusion Imaging Using Multishot-Encoded Simultaneous Multi-Slice (MUSIUM)

Khoi Minh Huynh, Pew-Thian Yap, Wei-Tang Chang, 2020, 2012.00664.

Brain anatomical networks in early human brain development

Dinggang Shen, John H. Gilmore, Yong Fan, 2011, NeuroImage.

Acute ischemic stroke: Evidence-based neuroimaging

Weili Lin, J. Lee, A. Ford, 2013 .

Neuroimaging in Acute Ischemic Stroke

Weili Lin, J. Lee, K. Vo, 2011 .

Editorial

Weili Lin, W. Powers, 2012, Translational Stroke Research.

Prenatal cocaine effects on brain structure in early infancy

John H. Gilmore, Guido Gerig, Weili Lin, 2014, NeuroImage.

Evidence-based neuroimaging in acute ischemic stroke.

Weili Lin, J. Lee, K. Vo, 2003, Neuroimaging clinics of North America.

Dilated Dense U-Net for Infant Hippocampus Subfield Segmentation

Dinggang Shen, Feng Shi, Weili Lin, 2019, Front. Neuroinform..

Disentangled-Multimodal Adversarial Autoencoder: Application to Infant Age Prediction With Incomplete Multimodal Neuroimages

Dan Hu, Li Wang, Han Zhang, 2020, IEEE Transactions on Medical Imaging.

Learning MRI artefact removal with unpaired data

Dinggang Shen, Kim-Han Thung, Pew-Thian Yap, 2021, Nat. Mach. Intell..

Development of Thalamocortical Connectivity during Infancy and Its Cognitive Correlations

Wei Gao, Weili Lin, Sarael Alcauter, 2014, The Journal of Neuroscience.

Early Changes of Tissue Perfusion After Tissue Plasminogen Activator in Hyperacute Ischemic Stroke

Yasheng Chen, H. An, Weili Lin, 2011, Stroke.

Harmonization of Infant Cortical Thickness Using Surface-to-Surface Cycle-Consistent Adversarial Networks

Li Wang, Shunren Xia, Dinggang Shen, 2019, MICCAI.

Fast Image-Level MRI Harmonization via Spectrum Analysis

Weili Lin, P. Yap, Mingxia Liu, 2022, MLMI@MICCAI.

Intrinsic Regression Models for Manifold-Valued Data

Martin Styner, Hongtu Zhu, Xiaoyan Shi, 2009, MICCAI.

Emergence of a hierarchical brain during infancy reflected by stepwise functional connectivity

Wei Gao, Weili Lin, Andrew P. Salzwedel, 2017, Human brain mapping.

Initial experience in hybrid PET-MRI for evaluation of refractory focal onset epilepsy

H. An, Weili Lin, D. Shen, 2015, Seizure.

Evaluation of MR-Derived Cerebral Oxygen Metabolic Index in Experimental Hyperoxic Hypercapnia, Hypoxia, and Ischemia

Yasheng Chen, H. An, Weili Lin, 2009, Stroke.

TOWERS: T‐One with Enhanced Robustness and Speed

Weili Lin, Hongyu An, Jürgen Finsterbusch, 2014, Magnetic resonance in medicine.

MULTISCALE ADAPTIVE SMOOTHING MODELS FOR THE HEMODYNAMIC RESPONSE FUNCTION IN FMRI.

Hongtu Zhu, Weili Lin, Jiaping Wang, 2013, The annals of applied statistics.

Adaptively and Spatially Estimating the Hemodynamic Response Functions in fMRI

Hongtu Zhu, Weili Lin, Jiaping Wang, 2011, MICCAI.

Path Signature Neural Network of Cortical Features for Prediction of Infant Cognitive Scores

Gang Li, Weili Lin, Xiangmin Xu, 2022, IEEE Transactions on Medical Imaging.

PopTract: Population-Based Tractography

Dinggang Shen, John H. Gilmore, Pew-Thian Yap, 2011, IEEE Transactions on Medical Imaging.

Consistent anterior-posterior segregation of the insula during the first 2 years of life.

Wei Gao, Weili Lin, Sarael Alcauter, 2015, Cerebral cortex.

Acute Stroke Imaging Research Roadmap II

M. Luby, A. Alexandrov, A. Demchuk, 2008, Stroke.

Increased Cortical Cerebral Blood Flow in Asymptomatic Human Immunodeficiency Virus-Infected Subjects.

H. An, Weili Lin, W. Powers, 2016, Journal of stroke and cerebrovascular diseases : the official journal of National Stroke Association.

High-resolution 3D MR Fingerprinting using parallel imaging and deep learning

Dinggang Shen, Weili Lin, Zhenghan Fang, 2020, NeuroImage.

A magnetic resonance (MR) compatible selective brain temperature manipulation system for preclinical study

H. An, Weili Lin, Yuheng Cai, 2012, Medical devices.

Effects of motion and retrospective motion correction on the visualization and quantification of perivascular spaces in ultrahigh resolution T2‐weighted images at 7T

Weili Lin, X. Zong, S. Hung, 2021, Magnetic resonance in medicine.

Morphology of perivascular spaces and enclosed blood vessels in young to middle-aged healthy adults at 7T: Dependences on age, brain region, and breathing gas

Weili Lin, D. Shen, K. Yamashita, 2020, NeuroImage.

Enhancement of Perivascular Spaces in 7 T MR Image using Haar Transform of Non-local Cubes and Block-matching Filtering

Qian Wang, Sang Hyun Park, Jun Zhang, 2017, Scientific Reports.

Enhancement of Perivascular Spaces in 7 T MR Image using Haar Transform of Non-local Cubes and Block-matching Filtering

Sang Hyun Park, Weili Lin, D. Shen, 2017, Scientific Reports.

Segmentation of perivascular spaces in 7T MR image using auto-context model with orientation-normalized features

Yaozong Gao, Dinggang Shen, Sang Hyun Park, 2016, NeuroImage.

Simultaneous and consistent labeling of longitudinal dynamic developing cortical surfaces in infants

Dinggang Shen, Li Wang, Feng Shi, 2014, Medical Image Anal..

Longitudinal development of cortical thickness, folding, and fiber density networks in the first 2 years of life

Dinggang Shen, Li Wang, Feng Shi, 2014, Human brain mapping.

Measuring longitudinally dynamic cortex development in infants by reconstruction of consistent cortical surfaces

Dinggang Shen, John H. Gilmore, Li Wang, 2013, 2013 IEEE 10th International Symposium on Biomedical Imaging.

Multi-Site Infant Brain Segmentation Algorithms: The iSeg-2019 Challenge

Dinggang Shen, M.N.S. Swamy, Jun Ma, 2020, IEEE Transactions on Medical Imaging.

3D conditional generative adversarial networks for high-quality PET image estimation at low dose

Dinggang Shen, Lei Wang, Yan Wang, 2018, NeuroImage.

MR fingerprinting enables quantitative measures of brain tissue relaxation times and myelin water fraction in the first five years of life

Yong Chen, Weili Lin, Meng-Hsiang Chen, 2019, NeuroImage.

Quantitative Measurements of Cerebral Blood Oxygen Saturation Using Magnetic Resonance Imaging

Weili Lin, Hongyu An, H. An, 2000, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism.

Determining Malignancy of Brain Tumors by Analysis of Vessel Shape

Guido Gerig, Stephen R. Aylward, Weili Lin, 2004, MICCAI.

Quantitative Analysis of White Matter Fiber Properties along Geodesic Paths

John H. Gilmore, Guido Gerig, Weili Lin, 2003, MICCAI.

Magnetic resonance angiography visualization of abnormal tumor vasculature in genetically engineered mice.

Weili Lin, Elizabeth Bullitt, Chaoying Yin, 2005, Cancer research.

A Few-Shot Learning Graph Multi-trajectory Evolution Network for Forecasting Multimodal Baby Connectivity Development from a Baseline Timepoint pdf

Dinggang Shen, Islem Rekik, Mohamed Ali Mahjoub, 2021, PRIME@MICCAI.

Learning Infant Brain Developmental Connectivity for Cognitive Score Prediction

Zhengwang Wu, Lufan Liao, John Gilmore, 2021, MLMI@MICCAI.

Progressive Infant Brain Connectivity Evolution Prediction from Neonatal MRI Using Bidirectionally Supervised Sample Selection

Islem Rekik, Dinggang Shen, Weili Lin, 2019, PRIME@MICCAI.

Spherical U-Net on Cortical Surfaces: Methods and Applications

Dinggang Shen, John H. Gilmore, Gang Li, 2019, IPMI.

Joint prediction of longitudinal development of cortical surfaces and white matter fibers from neonatal MRI

Dinggang Shen, Islem Rekik, Pew-Thian Yap, 2017, NeuroImage.

Predicting infant cortical surface development using a 4D varifold-based learning framework and local topography-based shape morphing

Dinggang Shen, Islem Rekik, Weili Lin, 2016, Medical Image Anal..

Prediction of Infant MRI Appearance and Anatomical Structure Evolution Using Sparse Patch-Based Metamorphosis Learning Framework

Dinggang Shen, Guorong Wu, Islem Rekik, 2015, Patch-MI@MICCAI.

Construction of 4D high-definition cortical surface atlases of infants: Methods and applications

Dinggang Shen, John H. Gilmore, Li Wang, 2015, Medical Image Anal..

Spatiotemporal patterns of cortical fiber density in developing infants, and their relationship with cortical thickness

Dinggang Shen, Weili Lin, John H Gilmore, 2015, Human brain mapping.

Integration of sparse multi-modality representation and anatomical constraint for isointense infant brain MR image segmentation

Yaozong Gao, Dinggang Shen, John H. Gilmore, 2014, NeuroImage.

The dynamic reorganization of the default-mode network during a visual classification task

John H. Gilmore, Wei Gao, Weili Lin, 2013, Front. Syst. Neurosci..

Using Functional Connectivity Magnetic Resonance Imaging to Measure Brain Connectivity in Preterm Infants

Andrew P. Salzwedel, S. Merhar, Weili Lin, 2017, Nursing research.

S3Reg: Superfast Spherical Surface Registration Based on Deep Learning

Dinggang Shen, Shunren Xia, Weili Lin, 2021, IEEE Transactions on Medical Imaging.

Evidence for human milk as a biological system and recommendations for study design—a report from “Breastmilk Ecology: Genesis of Infant Nutrition (BEGIN)” Working Group 4

N. Aghaeepour, Weili Lin, M. Becker, 2023, The American journal of clinical nutrition.

Existence of Functional Connectome Fingerprint during Infancy and Its Stability over Months

Weili Lin, Gang Li, Han Zhang, 2021, The Journal of Neuroscience.

Deep auto-context convolutional neural networks for standard-dose PET image estimation from low-dose PET/MRI

Dinggang Shen, Qian Wang, Yu Qiao, 2017, Neurocomputing.

Defining the Ischemic Penumbra Using Magnetic Resonance Oxygen Metabolic Index

Hongtu Zhu, Weili Lin, Yasheng Chen, 2015, Stroke.

Genetic Influences on the Developing Young Brain and Risk for Neuropsychiatric Disorders

Rebecca C. Knickmeyer, Jessica B. Girault, J. Piven, 2023, Biological Psychiatry.

Mapping Growth Patterns and Genetic Influences on Early Brain Development in Twins

Dinggang Shen, John H. Gilmore, Hongtu Zhu, 2009, MICCAI.

Single scan PC‐MRI by alternating the velocity encoding gradient polarity between phase encoding steps

Weili Lin, B. Steele, R. Dennis, 2011, Magnetic resonance in medicine.

Hierarchical Rough-to-Fine Model for Infant Age Prediction Based on Cortical Features

Gang Li, Dinggang Shen, Dan Hu, 2020, IEEE Journal of Biomedical and Health Informatics.

Segmentation of Infant Hippocampus Using Common Feature Representations Learned for Multimodal Longitudinal Data

Dinggang Shen, Yanrong Guo, Guorong Wu, 2015, MICCAI.

Segmenting Hippocampus from Infant Brains by Sparse Patch Matching with Deep-Learned Features

Dinggang Shen, Yanrong Guo, Guorong Wu, 2014, MICCAI.

3-D Fully Convolutional Networks for Multimodal Isointense Infant Brain Image Segmentation

Ehsan Adeli, Li Wang, Weili Lin, 2019, IEEE Transactions on Cybernetics.

Improving high‐resolution MR bold venographic imaging using a T1 reducing contrast agent

H. An, Weili Lin, E. Haacke, 1999, Journal of magnetic resonance imaging : JMRI.

Angular Upsampling in Infant Diffusion MRI Using Neighborhood Matching in x-q Space

Dinggang Shen, Bin Dong, Pew-Thian Yap, 2018, Front. Neuroinform..

Accurate and Consistent 4D Segmentation of Serial Infant Brain MR Images

Dinggang Shen, John H. Gilmore, Li Wang, 2011, MBIA.

Consistent 4 D Cortical Thickness Measurement for Longitudinal Neuroimaging Study

Dinggang Shen, Yaping Wang, Feng Shi, 2011 .

Scalable joint segmentation and registration framework for infant brain images

Dinggang Shen, Guorong Wu, Li Wang, 2017, Neurocomputing.

Brainwide functional networks associated with anatomically- and functionally-defined hippocampal subfields using ultrahigh-resolution fMRI

Pew-Thian Yap, Kelly S. Giovanello, Han Zhang, 2020, Scientific Reports.

Structured Learning for 3-D Perivascular Space Segmentation Using Vascular Features

Yaozong Gao, Dinggang Shen, Sang Hyun Park, 2017, IEEE Transactions on Biomedical Engineering.

Estimation of shape and growth brain network atlases for connectomic brain mapping in developing infants

Dinggang Shen, Islem Rekik, Weili Lin, 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

Quantitative measurements of cerebral blood flow in patients with unilateral carotid artery occlusion: A PET and MR study

W. Lin, H. An, Weili Lin, 2001, Journal of magnetic resonance imaging : JMRI.

Deep-Learning-Based Multi-Modal Fusion for Fast MR Reconstruction

Yong Chen, Yiqiang Zhan, Weili Lin, 2019, IEEE Transactions on Biomedical Engineering.

Infant brain development prediction with latent partial multi-view representation learning

Dinggang Shen, Weili Lin, Changqing Zhang, 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

Oxygen metabolism in acute ischemic stroke

Weili Lin, William J Powers, Weili Lin, 2017, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism.

Size‐optimized 32‐channel brain arrays for 3 T pediatric imaging

Daniel D. Dilks, Nancy Kanwisher, Weili Lin, 2011, Magnetic resonance in medicine.

Magnetic resonance cerebral metabolic rate of oxygen utilization in hyperacute stroke patients

Weili Lin, Hongyu An, Jin-Moo Lee, 2003, Annals of neurology.

Probing Tissue Microarchitecture of the Baby Brain via Spherical Mean Spectrum Imaging

Kim-Han Thung, Pew-Thian Yap, Ye Wu, 2019, IEEE Transactions on Medical Imaging.

Do Baby Brain Cortices that Look Alike at Birth Grow Alike During the First Year of Postnatal Development?

Dinggang Shen, Islem Rekik, Weili Lin, 2018, MICCAI.

Statistical growth modeling of longitudinal DT-MRI for regional characterization of early brain development

John H. Gilmore, Guido Gerig, P. Thomas Fletcher, 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

In vivo validation of the bold mechanism: A review of signal changes in gradient echo functional MRI in the presence of flow

Weili Lin, E. Mark Haacke, Song Lai, 1995, Int. J. Imaging Syst. Technol..

Quantitative phase contrast MRI of penetrating arteries in centrum semiovale at 7T

Weili Lin, Xiaopeng Zong, Weili Lin, 2019, NeuroImage.

Tailor the longitudinal anaysis for nih longitudinal normal brain developmental study

Dinggang Shen, Hongtu Zhu, Weili Lin, 2014, 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI).

SINGLE SCAN MR VELOCITY QUANTIFICATION IN ROI BY ALTERNATING VELOCITY ENCODING GRADIENT PULSE POLARITY BETWEEN PHASE ENCODING STEPS

Weili Lin, 2008 .

Reperfusion Beyond 6 Hours Reduces Infarct Probability in Moderately Ischemic Brain Tissue

Yasheng Chen, H. An, Weili Lin, 2016, Stroke.

Asymmetry Spectrum Imaging for Baby Diffusion Tractography

Dinggang Shen, Pew-Thian Yap, Ye Wu, 2019, IPMI.

Young Brain – Big Appetite

Weili Lin, 2020, Annals of Nutrition and Metabolism.

Cortical Foldingprints for Infant Identification

Dinggang Shen, Weili Lin, Zhengwang Wu, 2019, 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019).

Rapid Perfusion Abnormality Estimation in Acute Stroke With Temporal Correlation Analysis

Yueh Z. Lee, Weili Lin, J. Lee, 2003, Stroke.

Clinically Relevant Reperfusion in Acute Ischemic Stroke: MTT Performs Better than Tmax and TTP

H. An, Weili Lin, Hongtu Zhu, 2014, Translational Stroke Research.

Defining the Ischemic Penumbra Using Hyperacute Neuroimaging: Deriving Quantitative Ischemic Thresholds

H. An, Weili Lin, J. Lee, 2012, Translational Stroke Research.

Multi‐channel multi‐scale fully convolutional network for 3D perivascular spaces segmentation in 7T MR images

Dinggang Shen, Jun Zhang, Chunfeng Lian, 2018, Medical Image Anal..

Quantitative measurements of cerebral metabolic rate of oxygen utilization using MRI: a volunteer study

H. An, Weili Lin, A. Çelik, 2001, NMR in biomedicine.

A current perspective of the status of understanding BOLD imaging and its use in studying brain function: a summary of the workshop at the University of North Carolina in Chapel Hill, 26–28 October, 2000

X. Hu, Weili Lin, E. Haacke, 2001, NMR in biomedicine.

Infant Brain Development Prediction With Latent Partial Multi-View Representation Learning

Dinggang Shen, Gang Li, Ehsan Adeli, 2019, IEEE Transactions on Medical Imaging.

Spherical Deformable U-Net: Application to Cortical Surface Parcellation and Development Prediction

Dinggang Shen, Shunren Xia, Weili Lin, 2021, IEEE Transactions on Medical Imaging.

Multi-stage Image Quality Assessment of Diffusion MRI via Semi-supervised Nonlocal Residual Networks

Kim-Han Thung, Pew-Thian Yap, Dinggang Shen, 2019, MICCAI.

Multi-Level Canonical Correlation Analysis for Standard-Dose PET Image Estimation

Yan Wang, Dinggang Shen, David S. Lalush, 2016, IEEE Transactions on Image Processing.

Predicting standard-dose PET image from low-dose PET and multimodal MR images using mapping-based sparse representation

Yan Wang, Pei Zhang, Xi Wu, 2015, MLMI.

3D Auto-Context-Based Locality Adaptive Multi-Modality GANs for PET Synthesis

Dinggang Shen, Xi Wu, Chen Zu, 2019, IEEE Transactions on Medical Imaging.

Automatic segmentation of neonatal images using convex optimization and coupled level sets

Dinggang Shen, John H. Gilmore, Li Wang, 2011, NeuroImage.

Learning-Based Meta-Algorithm for MRI Brain Extraction

Dinggang Shen, John H. Gilmore, Li Wang, 2011, MICCAI.

Automatic Segmentation of Neonatal Images Using Convex Optimization and Coupled Level Set Method

Dinggang Shen, John H. Gilmore, Li Wang, 2010, MIAR.

Topological Correction of Infant Cortical Surfaces Using Anatomically Constrained U-Net

Daoqiang Zhang, Li Wang, Liang Sun, 2018, MLMI@MICCAI.

Longitudinal Development of Cortical and Subcortical Gray Matter from Birth to 2 Years

J. Gilmore, R. Hamer, Weili Lin, 2012 .

A SPARSE REDUCED RANK FRAMEWORK FOR GROUP ANALYSIS OF FUNCTIONAL NEUROIMAGING DATA.

Hongtu Zhu, Weili Lin, Mihye Ahn, 2015, Statistica Sinica.

Real-Time Quality Assessment of Pediatric MRI via Semi-Supervised Deep Nonlocal Residual Neural Networks

Dinggang Shen, Siyuan Liu, Kim-Han Thung, 2019, IEEE Transactions on Image Processing.

Deep Granular Feature-Label Distribution Learning for Neuroimaging-Based Infant Age Prediction

Dan Hu, Dinggang Shen, Zhengwang Wu, 2019, MICCAI.

Unpaired Deep Cross-Modality Synthesis with Fast Training

Dinggang Shen, Yang Li, Qian Wang, 2018, DLMIA/ML-CDS@MICCAI.

Locality Adaptive Multi-modality GANs for High-Quality PET Image Synthesis

Dinggang Shen, Lei Wang, Yan Wang, 2018, MICCAI.

Benchmark on Automatic Six-Month-Old Infant Brain Segmentation Algorithms: The iSeg-2017 Challenge

Gang Li, Dinggang Shen, Guoyan Zheng, 2019, IEEE Transactions on Medical Imaging.

A Deep Learning Framework for Noise Component Detection from Resting-State Functional MRI

Yujie Liu, Han Zhang, Dinggang Shen, 2019, MICCAI.

Artery and vein separation using susceptibility‐dependent phase in contrast‐enhanced MRA

E M Haacke, J J Brown, Weili Lin, 2000, Journal of magnetic resonance imaging : JMRI.

Surface-Volume Consistent Construction of Longitudinal Atlases for the Early Developing Brain

Pew-Thian Yap, Dinggang Shen, Zhengwang Wu, 2019, MICCAI.

Subject-Specific Estimation of Missing Cortical Thickness Maps in Developing Infant Brains

Yaozong Gao, Dinggang Shen, John H. Gilmore, 2015, MCV@MICCAI.

Visualization of perivascular spaces in the human brain at 7T: sequence optimization and morphology characterization

Dinggang Shen, Sang Hyun Park, Weili Lin, 2016, NeuroImage.

Developmental Patterns Based Individualized Parcellation of Infant Cortical Surface

Dinggang Shen, Li Wang, Weili Lin, 2017, MICCAI.

Asymmetrical ventricular enlargement in Parkinson's disease

Yueh Z. Lee, M. McKeown, M. Styner, 2007, Movement disorders : official journal of the Movement Disorder Society.

The Synchronization within and Interaction between the Default and Dorsal Attention Networks in Early Infancy

J. Gilmore, Weili Lin, D. Shen, 2012 .

Longitudinal Prediction of Infant Diffusion MRI Data via Graph Convolutional Adversarial Networks

Pew-Thian Yap, Weili Lin, Dinggang Shen, 2019, IEEE Transactions on Medical Imaging.

The potential of infant fMRI research and the study of early life stress as a promising exemplar

Jennifer H. Pfeifer, D. Fair, Weili Lin, 2014, Developmental Cognitive Neuroscience.

Vascular Attributes and Malignant Brain Tumors

Guido Gerig, Stephen R. Aylward, Weili Lin, 2003, MICCAI.

Ultra-Fast T2-Weighted MR Reconstruction Using Complementary T1-Weighted Information

Dinggang Shen, Yong Chen, Qian Wang, 2018, MICCAI.

Dynamic perfusion and diffusion MRI of cortical spreading depolarization in photothrombotic ischemia

Weili Lin, Hsin-Yi Lai, Yen-Yu Ian Shih, 2014, Neurobiology of Disease.

Synergy of Image Analysis for Animal and Human Neuroimaging Supports Translational Research on Drug Abuse

Guido Gerig, Ipek Oguz, Weili Lin, 2011, Front. Psychiatry.

Automatic Segmentation of Neonatal Brain MRI

John H. Gilmore, Guido Gerig, Weili Lin, 2004, MICCAI.

Assessing Early Brain Development in Neonates by Segmentation of High-Resolution 3T MRI

John H. Gilmore, Guido Gerig, Weili Lin, 2003, MICCAI.

Noninvasive Measurements of Cerebral Blood Flow, Oxygen Extraction Fraction, and Oxygen Metabolic Index in Human with Inhalation of Air and Carbogen using Magnetic Resonance Imaging

Yasheng Chen, H. An, Weili Lin, 2012, Translational Stroke Research.

XQ-SR: Joint x-q space super-resolution with application to infant diffusion MRI

Dinggang Shen, Yong Zhang, Pew-Thian Yap, 2019, Medical Image Anal..

Angular Upsampling in Infant Diffusion MRI Using Neighborhood Matching in x-q Space

Weili Lin, D. Shen, P. Yap, 2018, Front. Neuroinform..

Temporal and Spatial Development of Axonal Maturation and Myelination of White Matter in the Developing Brain

J K Smith, G Gerig, J. Gilmore, 2008, American Journal of Neuroradiology.

Submillimeter MR fingerprinting using deep learning–based tissue quantification

Weili Lin, Dinggang Shen, Zhenghan Fang, 2019, Magnetic resonance in medicine.

Common variants contribute to intrinsic human brain functional networks

Weili Lin, Hongtu Zhu, Yun Li, 2022, Nature Genetics.

Principles of magnetic resonance imaging: a signal processing perspective [Book Review]

Weili Lin, 2000, IEEE Engineering in Medicine and Biology Magazine.

Disentangled Intensive Triplet Autoencoder for Infant Functional Connectome Fingerprinting

Dan Hu, Dinggang Shen, Zhengwang Wu, 2020, MICCAI.

Longitudinally-Consistent Parcellation of Infant Population Cortical Surfaces Based on Functional Connectivity

Dazhe Zhao, Dinggang Shen, Yu Meng, 2017, MLMI@MICCAI.

Parcellation of Infant Surface Atlas Using Developmental Trajectories of Multidimensional Cortical Attributes

Dinggang Shen, John H. Gilmore, Li Wang, 2015, MICCAI.

Development of Thalamocortical Connectivity during Infancy and Its Cognitive Correlations

J. Gilmore, Weili Lin, Wei Gao, 2014, The Journal of Neuroscience.

Longitudinal Parcellation of the Infant Cortex Using Multi-modal Connectome Harmonics

Zhengwang Wu, Khoi Minh Huynh, Sahar Ahmad, 2021, Computational Diffusion MRI.

Resting-state functional MRI studies on infant brains: A decade of gap-filling efforts

Weili Lin, D. Shen, Han Zhang, 2019, NeuroImage.

Reperfusion Beyond 6 Hours Reduces Infarct Probability in Moderately Ischemic Brain Tissue

Yasheng Chen, H. An, Weili Lin, 2016, Stroke.

Neonatal brain MRI segmentation by building multi-region-multi-reference atlases

J. Gilmore, Weili Lin, D. Shen, 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

A new framework for analyzing white matter maturation in early brain development

John H. Gilmore, Guido Gerig, Weili Lin, 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

A Deep Spatial Context Guided Framework for Infant Brain Subcortical Segmentation

Dan Hu, Li Wang, Liangjun Chen, 2020, MICCAI.

Deep Learning for Fast and Spatially Constrained Tissue Quantification From Highly Accelerated Data in Magnetic Resonance Fingerprinting

Yong Chen, Weili Lin, D. Shen, 2019, IEEE Transactions on Medical Imaging.

Semi-supervised VAE-GAN for Out-of-Sample Detection Applied to MRI Quality Control

Martin Styner, Joseph Blocher, Mark Foster, 2019, MICCAI.

Quantitative Comparison of Misregistration in Abdominal and Pelvic Organs Between PET/MRI and PET/CT: Effect of Mode of Acquisition and Type of Sequence on Different Organs.

Weili Lin, Arif Sheikh, Weili Lin, 2015, AJR. American journal of roentgenology.

MRI based attenuation correction for PET/MRI via MRF segmentation and sparse regression estimated CT

Dinggang Shen, Yi Su, Weili Lin, 2014, 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI).

Multiscale adaptive generalized estimating equations for longitudinal neuroimaging data

M. Styner, J. Gilmore, Weili Lin, 2013, NeuroImage.

Prediction of Standard-Dose PET Image by Low-Dose PET and MRI Images

Yaozong Gao, Dinggang Shen, Feng Shi, 2014, MLMI.

Early Brain Functional Segregation and Integration Predict Later Cognitive Performance

Dinggang Shen, Han Zhang, Weili Lin, 2017, CNI@MICCAI.

White matter abnormalities revealed by diffusion tensor imaging in non-demented and demented HIV+ patients

Yasheng Chen, H. An, Weili Lin, 2009, NeuroImage.

Spatial Patterns, Longitudinal Development, and Hemispheric Asymmetries of Cortical Thickness in Infants from Birth to 2 Years of Age

J. Gilmore, Gang Li, Weili Lin, 2015, The Journal of Neuroscience.

Altered structural connectivity in neonates at genetic risk for schizophrenia: A combined study using morphological and white matter networks

J. Gilmore, Weili Lin, D. Shen, 2012, NeuroImage.

Prenatal and neonatal brain structure and white matter maturation in children at high risk for schizophrenia.

J. Lieberman, M. Styner, J. Gilmore, 2010, The American journal of psychiatry.

Cortical thickness and surface area in neonates at high risk for schizophrenia

J. Gilmore, Gang Li, Weili Lin, 2014, Brain Structure and Function.

Signal and Noise

Weili Lin, Azim Celik, Weili Lin, 2001 .

Multi-task Learning for Neonatal Brain Segmentation Using 3D Dense-Unet with Dense Attention Guided by Geodesic Distance

Toan Duc Bui, Dinggang Shen, Li Wang, 2019, DART/MIL3ID@MICCAI.

Benchmark on Automatic Six-Month-Old Infant Brain Segmentation Algorithms: The iSeg-2017 Challenge

Ismail Ben Ayed, Vladimir S Fonov, J. Pluim, 2019, IEEE Transactions on Medical Imaging.

An independent component analysis approach to perfusion weighted imaging

H. An, H. Krim, Weili Lin, 2005, Proceedings. (ICASSP '05). IEEE International Conference on Acoustics, Speech, and Signal Processing, 2005..

Estimating Tissue Microstructure with Undersampled Diffusion Data via Graph Convolutional Neural Networks

Jaeil Kim, Dinggang Shen, Geng Chen, 2020, MICCAI.

Spatiotemporal Uptake Characteristics of [18]F-2-Fluoro-2-Deoxy-D-Glucose in a Rat Middle Cerebral Artery Occlusion Model

H. An, Weili Lin, D. Shen, 2013, Stroke.

Automatic segmentation of neonatal images using convex optimization and coupled level sets

J. Gilmore, Weili Lin, D. Shen, 2011, NeuroImage.

FRATS: Functional Regression Analysis of DTI Tract Statistics

M. Styner, J. Gilmore, Weili Lin, 2010, IEEE Transactions on Medical Imaging.

LSTGEE: longitudinal analysis of neuroimaging data

Dinggang Shen, John H. Gilmore, Hongtu Zhu, 2009, Medical Imaging.

1 Longitudinal regression analysis of spatial-temporal growth patterns of geometrical 2 diffusion measures in early postnatal brain development with diffusion

J. Gilmore, Weili Lin, 2011 .

Denoising of Diffusion MRI Data via Graph Framelet Matching in x-q Space

Yong Zhang, Pew-Thian Yap, Weili Lin, 2019, IEEE Transactions on Medical Imaging.

Volume-Based Analysis of 6-Month-Old Infant Brain MRI for Autism Biomarker Identification and Early Diagnosis

Han Zhang, Gang Li, Weili Lin, 2018, MICCAI.

Local polynomial regression for symmetric positive definite matrices

Weili Lin, Hongtu Zhu, Ying Yuan, 2012, Journal of the Royal Statistical Society. Series B, Statistical methodology.

Construction of 4D high-definition cortical surface atlases of infants: Methods and applications

J. Gilmore, Gang Li, Weili Lin, 2015, Medical Image Anal..

Defining the Ischemic Penumbra Using Hyperacute Neuroimaging: Deriving Quantitative Ischemic Thresholds

H. An, Weili Lin, J. Lee, 2012, Translational Stroke Research.

Fetal and neonatal brain development.

Guido Gerig, Weili Lin, John H Gilmore, 2006, The American journal of psychiatry.