Jenn-Kang Hwang

发表

Relationship between local structural entropy and protein thermostabilty

Chenhsiung Chan, Han-Kuen Liang, Nai-Wan Hsiao, 2004, Proteins.

Three-Dimensional Reconstruction of Brain-wide Wiring Networks in Drosophila at Single-Cell Resolution

Guan-Yu Chen, A. Chiang, Jenn-Kang Hwang, 2011, Current Biology.

Simulation of free energy relationships and dynamics of SN2 reactions in aqueous solution

S. Creighton, A. Warshel, Jenn-Kang Hwang, 1988 .

Predicting subcellular localization of proteins for Gram‐negative bacteria by support vector machines based on n‐peptide compositions

Jenn-Kang Hwang, Chin-Sheng Yu, Chih‐Jen Lin, 2004, Protein science : a publication of the Protein Society.

On the Structural Characteristics of the Protein Active Sites and Their Relation to Thermal Fluctuations

Shao-Wei Huang, Jenn-Kang Hwang, Jenn-Kang Hwang, 2011 .

Prediction of Protein-Protein Interaction Sites from Three-Dimensional Structure

Jenn-Kang Hwang, 黃存操, Tsun-Tsao Huang, 2004 .

The fragment transformation method to detect the protein structural motifs

Jenn-Kang Hwang, Chin-Sheng Yu, Shifan Chang, 2006, Proteins.

On the relationship between the sequence conservation and the packing density profiles of the protein complexes

Chih-Min Chang, Jenn-Kang Hwang, Jenn-Kang Hwang, 2013, Proteins.

Amino acid coupling patterns in thermophilic proteins

Ming-Tat Ko, Jenn-Kang Hwang, Han-Kuen Liang, 2005, Proteins.

Protein Thermal Stability Enhancement by Designing Salt Bridges: A Combined Computational and Experimental Study

Jenn-Kang Hwang, Ching-Ping Tseng, Chi-Wen Lee, 2014, PloS one.

Structure-stability-activity relationship in covalently cross-linked N-carbamoyl D-amino acid amidohydrolase and N-acylamino acid racemase.

Jenn-Kang Hwang, Wei-Chun Chiu, Jenn-Kang Hwang, 2006, Journal of molecular biology.

Prediction of protein subcellular localization

Jenn-Kang Hwang, Chin-Sheng Yu, Chih-Hao Lu, 2006, Proteins.

Evolutionary information hidden in a single protein structure

Chih-Min Chang, Jenn-Kang Hwang, Wei-Cheng Lo, 2012, Proteins.

Site-specific structural constraints on protein sequence evolutionary divergence: local packing density versus solvent exposure.

Jenn-Kang Hwang, Julian Echave, Sung-Huan Yu, 2014, Molecular biology and evolution.

Detection and Alignment of 3D Domain Swapping Proteins Using Angle-Distance Image-Based Secondary Structural Matching Techniques

Chuan Yi Tang, Tun-Wen Pai, Ping-Chiang Lyu, 2010, PloS one.

On the Relationship Between Residue Solvent Exposure and Thermal Fluctuations in Proteins

Jenn-Kang Hwang, Shao-Wei Huang, Yu-Tung Chien, 2012 .

Membrane protein-regulated networks across human cancers

Jenn-Kang Hwang, Jinn-Moon Yang, Y. Ho, 2019, Nature Communications.

CELLO2GO: A Web Server for Protein subCELlular LOcalization Prediction with Functional Gene Ontology Annotation

Jenn-Kang Hwang, Chin-Sheng Yu, Shao-Wei Huang, 2014, PloS one.

Relationship between protein structures and disulfide‐bonding patterns

P. Lyu, Jenn-Kang Hwang, Chao-Chun Chuang, 2003, Proteins.

Predicting disulfide connectivity patterns

Jenn-Kang Hwang, Chin-Sheng Yu, Jenn-Kang Hwang, 2007, Proteins.

GEM: A Gaussian evolutionary method for predicting protein side‐chain conformations

Cheng-Yan Kao, Ming-Jing Hwang, Chi-Hung Tsai, 2002, Protein science : a publication of the Protein Society.

Prediction of the bonding states of cysteines Using the support vector machines based on multiple feature vectors and cysteine state sequences

Jenn-Kang Hwang, Chih‐Jen Lin, Yeong-shin Lin, 2004, Proteins.

Prediction of disulfide connectivity from protein sequences

Jenn-Kang Hwang, Jenn-Kang Hwang, Yu‐Ching Chen, 2005, Proteins.

Structural Bioinformatics Core Fine-grained Protein Fold Assignment by Support Vector Machines using generalized n −peptide Coding Schemes and jury voting from multiple parameter sets

Jenn-Kang Hwang, H. Chu, 2003 .

The conservation profile of a protein bears the imprint of the molecule that is evolutionarily coupled to the protein

Jenn-Kang Hwang, Chih-Min Chang, Yu-Wen Huang, 2015, Proteins.

Sequence Conservation, Radial Distance and Packing Density in Spherical Viral Capsids

Jenn-Kang Hwang, Tsun-Tsao Huang, Chih-Min Chang, 2015, PloS one.

Computational Analysis of KRAS Mutations: Implications for Different Effects on the KRAS p.G12D and p.G13D Mutations

Jenn-Kang Hwang, M. Herreros-Villanueva, T. Er, 2013, PloS one.

Prediction of NMR order parameters in proteins using weighted protein contact-number model

Shao-Wei Huang, Jenn-Kang Hwang, Jenn-Kang Hwang, 2008 .

How Important Are Quantum Mechanical Nuclear Motions in Enzyme Catalysis

Arieh Warshel, Jenn-Kang Hwang, A. Warshel, 1996 .

Deciphering the Preference and Predicting the Viability of Circular Permutations in Proteins

P. Lyu, Jenn-Kang Hwang, Wei-Cheng Lo, 2012, PloS one.

pKNOT v.2: the protein KNOT web server

Chih-Chieh Chen, Jenn-Kang Hwang, Yan-Long Lai, 2012, Nucleic Acids Res..

Functional Investigation of Transmembrane Helix 3 in H+-Translocating Pyrophosphatase

Jenn-Kang Hwang, Yih-Jiuan Pan, Shih-Ming Lin, 2013, The Journal of Membrane Biology.

Calcium binding mode of γ-carboxyglutamic acids in conantokins

P. Lyu, Jenn-Kang Hwang, C. H. Lin, 1999 .

gkv 454 ( PS ) 2 : protein structure prediction server version 3 . 0

Jenn-Kang Hwang, Tsun-Tsao Huang, Chi-Wen Lee, 2015 .

Reassessment of morphological characteristics in freshwater eels (genus Anguilla, Anguillidae) shows congruence with molecular phylogeny estimates

Jenn-Kang Hwang, Yeong-shin Lin, C. Tzeng, 2005 .

Ubiquitin-coated nanodiamonds bind to autophagy receptors for entry into the selective autophagy pathway

Jenn-Kang Hwang, Kuang-Kai Liu, Jui‐I Chao, 2017, Autophagy.

Crystal Structure of Helicobacter pylori Formamidase AmiF Reveals a Cysteine-Glutamate-Lysine Catalytic Triad*

Jenn-Kang Hwang, Wen-Ching Wang, Shao-Wei Huang, 2007, Journal of Biological Chemistry.

Deriving correlated motions in proteins from X-ray structure refinement by using TLS parameters.

Jenn-Kang Hwang, Chien-Hua Shih, Chih-Chieh Chen, 2013, Gene.

Simulations of quantum mechanical corrections for rate constants of hydride-transfer reactions in enzymes and solutions

Arieh Warshel, Jenn-Kang Hwang, A. Warshel, 1991 .

On the relationship between the protein structure and protein dynamics

Jenn-Kang Hwang, Shao-Wei Huang, Chih-Hao Lu, 2008, Proteins.

A shortcut for multidimensional quantization. The average partial actions method

A. Warshel, Jenn-Kang Hwang, 1985 .

On the packing density of the unbound protein-protein interaction interface and its implications in dynamics

Jenn-Kang Hwang, Tsun-Tsao Huang, Jau-Ji Lin, 2015, BMC Bioinformatics.

Structural transformations in dinuclear zinc complexes involving Zn-Zn bonds.

Jen-Shiang K. Yu, Jenn-Kang Hwang, Y. Tsai, 2007, Chemical communications.

A three-coordinate and quadruply bonded Mo-Mo complex.

Jen-Shiang K. Yu, Jenn-Kang Hwang, Y. Tsai, 2006, Journal of the American Chemical Society.

KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns

Hsien-Da Huang, Tzong-Yi Lee, Ming-Tat Ko, 2007, Nucleic Acids Res..

pKNOT: the protein KNOT web server

Jenn-Kang Hwang, Yan-Long Lai, Shih-Chung Yen, 2007, Nucleic Acids Res..

Classical Trajectory Mapping Approach for Simulations of Chemical Reactions in Solution and in Enzymes

Jenn-Kang Hwang, J. Pan, 1996 .

Simulating the dynamics of the primary charge separation process in bacterial photosynthesis

S. Creighton, A. Warshel, Jenn-Kang Hwang, 1988 .

(PS)2: protein structure prediction server version 3.0

Chih-Chieh Chen, Jenn-Kang Hwang, Chih-Sheng Chu, 2015, Nucleic Acids Res..

Prediction of Protein Subcellular Localizations

Jenn-Kang Hwang, Chin-Sheng Yu, Jenn-Kang Hwang, 2008, 2008 Eighth International Conference on Intelligent Systems Design and Applications.

Relationships between residue Voronoi volume and sequence conservation in proteins.

Jenn-Kang Hwang, Jen-wei Liu, Chih-Wen Cheng, 2018, Biochimica et biophysica acta. Proteins and proteomics.

Local Packing Density Is the Main Structural Determinant of the Rate of Protein Sequence Evolution at Site Level

Jenn-Kang Hwang, Julian Echave, Sung-Huan Yu, 2014, BioMed research international.

A mechanistic stress model of protein evolution accounts for site-specific evolutionary rates and their relationship with packing density and flexibility

Jenn-Kang Hwang, Julian Echave, Tsun-Tsao Huang, 2014, BMC Evolutionary Biology.

Proportion of solvent-exposed amino acids in a protein and rate of protein evolution.

Wei-Lun Hsu, Jenn-Kang Hwang, Jenn-Kang Hwang, 2007, Molecular biology and evolution.

Codon-usage bias versus gene conversion in the evolution of yeast duplicate genes

J. Byrnes, Jenn-Kang Hwang, Wen-Hsiung Li, 2006, Proceedings of the National Academy of Sciences.

Protein complexity, gene duplicability and gene dispensability in the yeast genome.

Jenn-Kang Hwang, Wen-Hsiung Li, Yeong-Shin Lin, 2007, Gene.

MIB: Metal Ion-Binding Site Prediction and Docking Server

Yu-Feng Lin, Jenn-Kang Hwang, Chih-Wen Cheng, 2016, J. Chem. Inf. Model..

Protein subcellular localization prediction based on compartment-specific features and structure conservation

Wen-Lian Hsu, Emily Chia-Yu Su, Ting-Yi Sung, 2007, BMC Bioinformatics.

CPred: a web server for predicting viable circular permutations in proteins

Ping-Chiang Lyu, Jenn-Kang Hwang, Tian Dai, 2012, Nucleic Acids Res..

Structure Entropy of Peptide Fragments

Jenn-Kang Hwang, 2002 .

Deriving protein dynamical properties from weighted protein contact number

Shao-Wei Huang, Jenn-Kang Hwang, Yan-Long Lai, 2008, Proteins.

Why ion pair reversal by protein engineering is unlikely to succeed

A. Warshel, Jenn-Kang Hwang, 1988, Nature.

(PS)2-v2: template-based protein structure prediction server

Chih-Chieh Chen, Jinn-Moon Yang, Jenn-Kang Hwang, 2009, BMC Bioinformatics.

Computational analysis of a novel mutation in ETFDH gene highlights its long-range effects on the FAD-binding motif

Jenn-Kang Hwang, Y. Chien, Y. Jong, 2011, BMC Structural Biology.

(PS)2: protein structure prediction server

Chih-Chieh Chen, Jinn-Moon Yang, Jenn-Kang Hwang, 2006, Nucleic Acids Res..

Quantized semiclassical trajectory approach for evaluation of vibronic transitions in anharmonic molecules

A. Warshel, Jenn-Kang Hwang, 1985 .

Effects of solute–solvent coupling and solvent saturation on solvation dynamics of charge transfer reactions

S. Creighton, A. Warshel, Jenn-Kang Hwang, 1988 .

GEMSCORE: A New Empirical Energy Function for Protein Folding

Jinn-Moon Yang, Jenn-Kang Hwang, Yi-Yuan Chiu, 2005, 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.

Microscopic examination of free-energy relationships for electron transfer in polar solvents

A. Warshel, Jenn-Kang Hwang, 1987 .

A Quantized Classical Path Approach for Calculations of Quantum Mechanical Rate Constants

Arieh Warshel, Jenn-Kang Hwang, A. Warshel, 1993 .

Predicting RNA-binding sites of proteins using support vector machines and evolutionary information

Wen-Lian Hsu, Emily Chia-Yu Su, Ting-Yi Sung, 2008, BMC Bioinformatics.

Computation of conformational entropy from protein sequences using the machine‐learning method—Application to the study of the relationship between structural conservation and local structural stability

Jenn-Kang Hwang, Shao-Wei Huang, Shao‐Wei Huang, 2005, Proteins.

Simulation of the dynamics of electron transfer reactions in polar solvents: Semiclassical trajectories and dispersed polaron approaches

A. Warshel, Jenn-Kang Hwang, 1986 .

Computation of the protein structure entropy and its applications to protein folding processes

Chenhsiung Chan, P. Lyu, Jenn-Kang Hwang, 2003 .

On the relationship between the dispersed polaron and spin-boson models

A. Warshel, Jenn-Kang Hwang, 1997 .

The amino acid-coupling sequence patterns in thermophilic and mesophilic proteomes

Ming-Tat Ko, Jenn-Kang Hwang, Han-Kuen Liang, 2004, 7th International Symposium on Parallel Architectures, Algorithms and Networks, 2004. Proceedings..

Membrane protein-regulated networks across human cancers

Jenn-Kang Hwang, Jinn-Moon Yang, Y. Ho, 2019, Nature Communications.

Functional Investigation of Transmembrane Helix 3 in H+-Translocating Pyrophosphatase

Jenn-Kang Hwang, Shih-Ming Lin, Yen-Wei Chen, 2013, Journal of Membrane Biology.

Molecular dynamics simulation of the enhancement of cobra cardiotoxin and E6 protein binding on mixed self-assembled monolayer molecules

Ching-Chang Chieng, Shih-Wei Hung, Jenn-Kang Hwang, 2006, Nanotechnology.

How do serine proteases really work?

A. Warshel, Jenn-Kang Hwang, A. Warshel, 1989, Biochemistry.

Protein subcellular localization prediction based on compartment-specific features and structure conservation

Jenn-Kang Hwang, W. Hsu, Ting-Yi Sung, 2007, BMC Bioinformatics.

A mechanistic stress model of protein evolution accounts for site-specific evolutionary rates and their relationship with packing density and flexibility

Jenn-Kang Hwang, J. Echave, Tsun-Tsao Huang, 2014, BMC Evolutionary Biology.

Analysis of Binding of Cobra Cardiotoxins to Heparin Reveals a New β-Sheet Heparin-binding Structural Motif*

Jenn-Kang Hwang, J. K. Hwang, Wen‐guey Wu, 1997, The Journal of Biological Chemistry.

Simulation of chemical reactions in solution by a combination of classical and quantum mechanical approach

Jenn-Kang Hwang, J. Pan, 1995 .

MIB: Metal Ion-Binding Site Prediction and Docking Server

Jenn-Kang Hwang, Chin-Sheng Yu, Chih-Hao Lu, 2016, J. Chem. Inf. Model..

On the relationship between catalytic residues and their protein contact number.

Shao-Wei Huang, Jenn-Kang Hwang, Sung-Huan Yu, 2011, Current protein & peptide science.

Quantitative Sequence/Conformation Relationship The Quantitative Relationship between Amino Acid Sequence and its Local Conformation

Chenhsiung Chan, P. Lyu, Jenn-Kang Hwang, 2002 .