A. Dunker

发表

Natively Disordered Proteins

P. Romero, Z. Obradovic, A. Dunker, 2008, Applied bioinformatics.

Rational drug design via intrinsically disordered protein.

Marc S. Cortese, Christopher J. Oldfield, P. Romero, 2006, Trends in biotechnology.

The power to detect recombination using the coalescent.

C. Brown, A. Dunker, E. Garner, 2001, Molecular biology and evolution.

Protein flexibility and intrinsic disorder

P. Radivojac, S. Vucetic, Z. Obradovic, 2004, Protein science : a publication of the Protein Society.

Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling

Christopher J. Oldfield, A. Dunker, C. Oldfield, 2005, Journal of molecular recognition : JMR.

Intrinsically disordered protein.

Christopher J. Oldfield, K. W. Hipps, C. Brown, 2001, Journal of molecular graphics & modelling.

Flavors of protein disorder

S. Vucetic, Z. Obradovic, A. Dunker, 2003, Proteins.

Flexible nets

Marc S. Cortese, L. Iakoucheva, P. Romero, 2005, The FEBS journal.

Coupled folding and binding with alpha-helix-forming molecular recognition elements.

Marc S. Cortese, Christopher J. Oldfield, P. Romero, 2005, Biochemistry.

Coupled folding and binding with α-helix-forming molecular recognition elements

Marc S. Cortese, Christopher J. Oldfield, P. Romero, 2005 .

Disorder and sequence repeats in hub proteins and their implications for network evolution.

A. Dunker, P. Tompa, J. Chen, 2006, Journal of proteome research.

Addressing the intrinsic disorder bottleneck in structural proteomics

Christopher J. Oldfield, A. Dunker, Y. Cheng, 2005, Proteins.

Improved amino acid flexibility parameters

P. Radivojac, Z. Obradovic, A. Dunker, 2003, Protein science : a publication of the Protein Society.

PROTEINS: Structure, Function, and Bioinformatics Suppl 7:176–182 (2005) Exploiting Heterogeneous Sequence Properties Improves Prediction of Protein Disorder

P. Radivojac, S. Vucetic, Z. Obradovic, 2022 .

Intrinsic disorder and functional proteomics.

Christopher J. Oldfield, L. Iakoucheva, P. Radivojac, 2007, Biophysical journal.

Use of conditional probabilities for determining relationships between amino acid sequence and protein secondary structure

A. Dunker, S. Johns, G. Arnold, 1992, Proteins.

PONDR-FIT: a meta-predictor of intrinsically disordered amino acids.

Roland L. Dunbrack, Robert W. Williams, A. Dunker, 2010, Biochimica et biophysica acta.

A computational investigation of allostery in the catabolite activator protein.

A Keith Dunker, Vladimir N Uversky, Samy O Meroueh, 2007, Journal of the American Chemical Society.

Binding promiscuity of unfolded peptides

Christopher J. Oldfield, A. Dunker, C. Oldfield, 2012 .

Intrinsically disordered proteins and their recognition functions

A. Dunker, P. Tompa, C. Oldfield, 2009 .

Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners

Christopher J. Oldfield, Jack Y. Yang, A. Dunker, 2008, BMC Genomics.

Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions.

Christopher J. Oldfield, L. Iakoucheva, S. Vucetic, 2007, Journal of proteome research.

3.9 Intrinsically Disordered Proteins

A. Dunker, V. Uversky, 2012 .

Proline RichMotifs as Drug Targets in ImmuneMediated Disorders

A. Dunker, M. Srinivasan, 2014 .

Intrinsically disordered regions of p53 family are highly diversified in evolution.

A. Dunker, V. Uversky, Celeste J. Brown, 2013, Biochimica et biophysica acta.

Proline Rich Motifs as Drug Targets in Immune Mediated Disorders

A. Dunker, M. Srinivasan, A. K. Dunker, 2012, International journal of peptides.

Function and Structure of Inherently Disordered Proteins This Review Comes from a Themed Issue on Proteins Edited Prediction of Non-folding Proteins and Regions Frequency of Disordered Regions Protein Evolution Partitioning Unstructured Proteins and Regions into Groups Involvement of Inherently Diso

M. Bolognesi, A. Dunker, J. Sussman, 2022 .

Intrinsic disorder in transcription factors.

Christopher J. Oldfield, A. Dunker, C. Oldfield, 2006, Biochemistry.

Analysis of molecular recognition features (MoRFs).

Marc S. Cortese, Christopher J. Oldfield, V. Vacic, 2006, Journal of molecular biology.

Characterization of molecular recognition features, MoRFs, and their binding partners.

A Keith Dunker, Vladimir Vacic, Predrag Radivojac, 2007, Journal of proteome research.

The importance of intrinsic disorder for protein phosphorylation.

L. Iakoucheva, P. Radivojac, Z. Obradovic, 2004, Nucleic acids research.

Intrinsic disorder in scaffold proteins: getting more from less.

A Keith Dunker, Marc S. Cortese, Vladimir N Uversky, 2008, Progress in biophysics and molecular biology.

A creature with a hundred waggly tails: intrinsically disordered proteins in the ribosome

Lukasz Kurgan, Zhenling Peng, A. Keith Dunker, 2013, Cellular and Molecular Life Sciences.

Why are we Interested in the Unfolded Peptides and Proteins

A. Dunker, V. Uversky, A. K. Dunker, 2012 .

Sequence complexity of disordered protein

P. Romero, Z. Obradovic, A. Dunker, 2001, Proteins.

Thousands of proteins likely to have long disordered regions.

A K Dunker, P. Romero, Z. Obradovic, 1998, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

Exploring the molecular design of protein interaction sites with molecular dynamics simulations and free energy calculations.

A Keith Dunker, Wei-Lun Hsu, Shide Liang, 2009, Biochemistry.

The alphabet of intrinsic disorder

A Keith Dunker, Peter Tompa, Vladimir N Uversky, 2013, Intrinsically disordered proteins.

Rethinking gene regulatory networks in light of alternative splicing, intrinsically disordered protein domains, and post-translational modifications

Stuart A. Newman, A. Keith Dunker, Karl J. Niklas, 2015, Front. Cell Dev. Biol..

Intrinsic disorder and protein function.

A Keith Dunker, Zoran Obradović, Lilia M Iakoucheva, 2002, Biochemistry.

Protein intrinsic disorder and induced pluripotent stem cells.

Christopher J. Oldfield, A. Dunker, C. Oldfield, 2012, Molecular bioSystems.

1 DO VIRAL PROTEINS POSSESS UNIQUE FEATURES ?

Robert W. Williams, Gerard Kian-Meng Goh, A. Dunker, 2011 .

Do Viral Proteins Possess Unique Features

Robert W. Williams, Gerard Kian-Meng Goh, A. Dunker, 2011 .

Protein intrinsic disorder and influenza virulence: the 1918 H1N1 and H5N1 viruses

Gerard Kian-Meng Goh, A. Dunker, V. Uversky, 2009, Virology Journal.

Protein intrinsic disorder toolbox for comparative analysis of viral proteins

A Keith Dunker, Vladimir N Uversky, Gerard Kian-Meng Goh, 2008, BMC Genomics.

Intrinsically Disordered Protein Analysis

A. Dunker, V. Uversky, J. Walker, 2012, Methods in Molecular Biology.

Identification of intrinsic order and disorder in the DNA repair protein XPA

Richard D. Smith, L. Iakoucheva, C. Brown, 2001, Protein science : a publication of the Protein Society.

Musite, a Tool for Global Prediction of General and Kinase-specific Phosphorylation Sites*

Dong Xu, A. Dunker, Jianjiong Gao, 2010, Molecular & Cellular Proteomics.

Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins.

Christopher J. Oldfield, L. Iakoucheva, S. Vucetic, 2007, Journal of proteome research.

Learning an Objective Alphabet of Amino Acid Conformations in Protein1

A. Dunker, R. Douthart, Robert T. Miller, 1993 .

Sweeping away protein aggregation with entropic bristles: intrinsically disordered protein fusions enhance soluble expression.

A. Dunker, Ya-Yue J Van, V. Uversky, 2012, Biochemistry.

An alphabet of amino acid conformations in protein

R. J. Douthart, A. Dunker, R. Douthart, 1993, [1993] Proceedings of the Twenty-sixth Hawaii International Conference on System Sciences.

Intrinsic Disorder and Protein Function

L. Iakoucheva, Z. Obradovic, A. Dunker, 2002 .

Intrinsically disordered proteins in human diseases: introducing the D2 concept.

Christopher J. Oldfield, A. Dunker, C. Oldfield, 2008, Annual review of biophysics.

Understanding protein non-folding.

A. Dunker, V. Uversky, 2010, Biochimica et biophysica acta.

Comparing and combining predictors of mostly disordered proteins.

Marc S. Cortese, Christopher J. Oldfield, A. Dunker, 2005, Biochemistry.

Controlled Chaos

A. Dunker, V. Uversky, 2008, Science.

Intrinsic protein disorder in complete genomes.

C. Brown, P. Romero, Z. Obradovic, 2000, Genome informatics. Workshop on Genome Informatics.

Predicting intrinsic disorder in proteins: an overview

A. Dunker, V. Uversky, B. Xue, 2009, Cell Research.

Classification of Intrinsically Disordered Regions and Proteins

Christopher J. Oldfield, Philip M. Kim, Robert J. Weatheritt, 2014, Chemical reviews.

Intrinsically disordered proteins and multicellular organisms.

Christopher J. Oldfield, A. Dunker, C. Oldfield, 2015, Seminars in cell & developmental biology.

Abundance of intrinsic disorder in protein associated with cardiovascular disease.

A. Dunker, Y. Cheng, T. LeGall, 2006, Biochemistry.

Folding minimal sequences: the lower bound for sequence complexity of globular proteins

P. Romero, Z. Obradovic, A. Dunker, 1999, FEBS letters.

Identification and functions of usefully disordered proteins.

Z. Obradovic, A. Dunker, Celeste J. Brown, 2002, Advances in protein chemistry.

Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions.

P. Romero, A. Dunker, V. Uversky, 2006, Journal of Proteome Research.

The unfoldomics decade: an update on intrinsically disordered proteins

Christopher J. Oldfield, Jack Y. Yang, V. Vacic, 2008, BMC Genomics.

Retro-MoRFs: Identifying Protein Binding Sites by Normal and Reverse Alignment and Intrinsic Disorder Prediction

A. Dunker, V. Uversky, B. Xue, 2010, International journal of molecular sciences.

Evolution and disorder.

A. Dunker, Audra K. Johnson, Celeste J. Brown, 2011, Current opinion in structural biology.

Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life

A. Dunker, V. Uversky, B. Xue, 2012, Journal of biomolecular structure & dynamics.

Stochastic machines as a colocalization mechanism for scaffold protein function

P. Romero, A. Dunker, Lukasz Kurgan, 2013, FEBS letters.

Exploring the binding diversity of intrinsically disordered proteins involved in one‐to‐many binding

Christopher J. Oldfield, P. Romero, A. Dunker, 2013, Protein science : a publication of the Protein Society.

Sequence fingerprints distinguish erroneous from correct predictions of Intrinsically Disordered Protein Regions

Konda Mani Saravanan, A. Dunker, S. Krishnaswamy, 2017, bioRxiv.

Sequence fingerprints distinguish erroneous from correct predictions of Intrinsically Disordered Protein Regions

Konda Mani Saravanan, A. Dunker, S. Krishnaswamy, 2017, bioRxiv.

DisProt 7.0: a major update of the database of disordered proteins

Sonia Longhi, Silvio C. E. Tosatto, Arne Elofsson, 2016, Nucleic Acids Res..

Unfoldomics of human diseases: linking protein intrinsic disorder with diseases

A Keith Dunker, Zoran Obradovic, Slobodan Vucetic, 2009, BMC Genomics.

DisProt: intrinsic protein disorder annotation in 2020

Silvio C. E. Tosatto, Arne Elofsson, Marco Necci, 2019, Nucleic Acids Res..

Mining α-Helix-Forming Molecular Recognition Features with Cross Species Sequence Alignments†

A. Keith Dunker, Vladimir N. Uversky, Christopher J. Oldfield, 2007 .

Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms.

A Keith Dunker, Zoran Obradovic, Predrag Radivojac, 2006, Proceedings of the National Academy of Sciences of the United States of America.

Enzyme catalysis prior to aromatic residues: reverse engineering of a dephosphoCoA kinase

A. Dunker, J. Meng, J. Vondrášek, 2020, bioRxiv.

Order, disorder, and flexibility: prediction from protein sequence.

A Keith Dunker, Lilia M Iakoucheva, L. Iakoucheva, 2003, Structure.

Natively Disordered Proteins

A Keith Dunker, Zoran Obradovic, Pedro Romero, 2004, Applied bioinformatics.

Drugs for 'protein clouds': targeting intrinsically disordered transcription factors.

A Keith Dunker, Vladimir N Uversky, A. Dunker, 2010, Current opinion in pharmacology.

SPINE-D: Accurate Prediction of Short and Long Disordered Regions by a Single Neural-Network Based Method

A Keith Dunker, Vladimir N Uversky, Bin Xue, 2012, Journal of biomolecular structure & dynamics.

Evidence that the A2 fragment of Shiga-like toxin type I is required for holotoxin integrity

A. Dunker, P. Jablonski, C. J. Hovde, 1994, Infection and immunity.

Back to the Future: Nuclear Magnetic Resonance and Bioinformatics Studies on Intrinsically Disordered Proteins.

Christopher J. Oldfield, A. Dunker, C. Oldfield, 2015, Advances in experimental medicine and biology.

An assignment of intrinsically disordered regions of proteins based on NMR structures.

A Keith Dunker, Motonori Ota, Ryotaro Koike, 2013, Journal of structural biology.

Changes in predicted protein disorder tendency may contribute to disease risk

A. Dunker, Yadong Wang, Yunlong Liu, 2011, BMC Genomics.

Functional anthology of intrinsic disorder. 2. Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions.

A Keith Dunker, Zoran Obradovic, Slobodan Vucetic, 2007, Journal of proteome research.

Predicting intrinsic disorder from amino acid sequence

Zoran Obradovic, Slobodan Vucetic, Predrag Radivojac, 2003, Proteins.

Identification of a gene signature in cell cycle pathway for breast cancer prognosis using gene expression profiling data

A. Dunker, A. Campen, Jiangang Liu, 2008, BMC Medical Genomics.

Investigation of transmembrane proteins using a computational approach

Jack Y. Yang, A. Dunker, Youping Deng, 2008, BMC Genomics.

Analysis of structured and intrinsically disordered regions of transmembrane proteins.

A Keith Dunker, Vladimir N Uversky, Bin Xue, 2009, Molecular bioSystems.

Functional fragments of disorder in outer membrane β barrel proteins

A. Dunker, S. Krishnaswamy, K. Kurup, 2013, Intrinsically disordered proteins.

Combining prediction, computation and experiment for the characterization of protein disorder.

A Keith Dunker, Lilia M Iakoucheva, Clay Bracken, 2004, Current opinion in structural biology.

Abundance and functional roles of intrinsic disorder in allergenic proteins and allergen representative peptides

A. Dunker, V. Uversky, B. Xue, 2011, Proteins.

Viral disorder or disordered viruses: do viral proteins possess unique features?

Christopher J Oldfield, Christopher J. Oldfield, Vladimir N Uversky, 2010, Protein and peptide letters.

Nipah shell disorder, modes of infection, and virulence

Gerard Kian-Meng Goh, James A. Foster, A. Dunker, 2020, Microbial Pathogenesis.

Zika and Flavivirus Shell Disorder: Virulence and Fetal Morbidity

Gerard Kian-Meng Goh, James A. Foster, A. Dunker, 2019, Biomolecules.

Intrinsic disorder mediates hepatitis C virus core–host cell protein interactions

Patrick T. Dolan, A. Dunker, R. Sun, 2015, Protein science : a publication of the Protein Society.

Prediction of Intrinsic Disorder in MERS-CoV/HCoV-EMC Supports a High Oral-Fecal Transmission

Gerard Kian-Meng Goh, A. Dunker, V. Uversky, 2013, PLoS currents.

Protein Disorder and Human Genetic Disease

L. Iakoucheva, A. Dunker, V. Uversky, 2012 .

Time, space, and disorder in the expanding proteome universe

A. Dunker, K. Lilley, David‐Paul Minde, 2017, Proteomics.

A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis

Richard Bonneau, D. Koller, L. Iakoucheva, 2012, Cell.

2 K 09 and Thereafter : The Coming Era of Integrative Bioinformatics

Jack Y. Yang, R. Bajcsy, M. Borodovsky, 2010 .

Evidence for a Strong Correlation Between Transcription Factor Protein Disorder and Organismic Complexity

Christopher J. Oldfield, K. Niklas, A. Dunker, 2017, Genome biology and evolution.

Isolation and characterization of cDNAs expressed in the early stages of flavonol-induced pollen germination in petunia.

A. Dunker, E. Garner, V. Guyon, 2000, Plant physiology.

Intrinsically disordered domains: Sequence ➔ disorder ➔ function relationships

A. Dunker, C. Oldfield, Bairong Shen, 2019, Protein science : a publication of the Protein Society.

N-terminal Domains of DELLA Proteins Are Intrinsically Unstructured in the Absence of Interaction with GID1/Gibberellic Acid Receptors*

Christopher J. Oldfield, A. Dunker, C. Oldfield, 2010, The Journal of Biological Chemistry.

Evolution of Protein Ductility in Duplicated Genes of Plants

K. Niklas, A. Dunker, B. Contreras-Moreira, 2018, Front. Plant Sci..

Protein disorder is positively correlated with gene expression in Escherichia coli.

A. Dunker, Y. Cheng, V. Uversky, 2008, Journal of proteome research.

Sequences and topology: intrinsic disorder in the evolving universe of protein structure.

J. Gough, A. Dunker, K. Dunker, 2011, Current opinion in structural biology.

Identification of Intrinsic Disorder in Complexes from the Protein Data Bank

A. Dunker, C. Oldfield, Bairong Shen, 2018, ACS omega.

Distribution and cluster analysis of predicted intrinsically disordered protein Pfam domains

Robert W. Williams, A. Dunker, V. Uversky, 2013, Intrinsically disordered proteins.

Intrinsically Disordered Proteins: An Update Keynote Paper of IEEE 7 th BIBE, Oct. 14-17 Harvard Medical School Conference Center

Jack Y. Yang, P. Romero, Z. Obradovic, 2007 .

Protein disorder in the human diseasome: unfoldomics of human genetic diseases

A Keith Dunker, Zoran Obradovic, Christopher J Oldfield, 2009, BMC Genomics.

High-throughput characterization of intrinsic disorder in proteins from the Protein Structure Initiative.

Marc S. Cortese, A. Dunker, C. Oldfield, 2012, Journal of structural biology.

Intrinsically disordered proteins and their recognition functions

A. Dunker, P. Tompa, C. Oldfield, 2009 .

Comparing NMR and X-ray protein structure: Lindemann-like parameters and NMR disorder

A. Dunker, J. Sussman, A. Kloczkowski, 2018, Journal of biomolecular structure & dynamics.

Shell Disorder Models Detect That Omicron Has Harder Shells with Attenuation but Is Not a Descendant of the Wuhan-Hu-1 SARS-CoV-2

James A. Foster, A. Dunker, V. Uversky, 2022, Biomolecules.

Unfoldomics of human genetic diseases: illustrative examples of ordered and intrinsically disordered members of the human diseasome.

A Keith Dunker, Zoran Obradovic, Christopher J Oldfield, 2009, Protein and peptide letters.

Intrinsically Disordered Proteins in Human Diseases.

A. Dunker, C. Oldfield, V. Uversky, 2007 .

Calmodulin signaling: Analysis and prediction of a disorder‐dependent molecular recognition

A Keith Dunker, Zoran Obradovic, Slobodan Vucetic, 2006, Proteins.

On the Importance of Computational Biology and Bioinformatics to the Origins and Rapid Progression of the Intrinsically Disordered Proteins Field

P. Radivojac, A. Dunker, Lukasz Kurgan, 2019 .

37 – THE SEQUENCE ATTRIBUTES METHOD FOR DETERMINING CORRELATIONS BETWEEN AMINO ACID SEQUENCE AND PROTEIN SECONDARY STRUCTURE

A. Dunker, S. Johns, G. Arnold, 1990 .

Another disordered chameleon: the Micro-Exon Gene 14 protein from Schistosomiasis.

A. Dunker, 2013, Biophysical journal.

OP-NARE130962 326..335

D. Wishart, A. Dunker, P. Wright, 2013 .

Shell Disorder Models Detect that Attenuated Omicron has Harder Shells but is not a Descendant of the Wuhan (SARS-CoV-2) Strain

James A. Foster, A. Dunker, V. Uversky, 2022 .

The evolutionary origins of cell type diversification and the role of intrinsically disordered proteins

K. Niklas, A. Dunker, I. Yruela, 2018, Journal of experimental botany.

DisProt 7.0: a major update of the database of disordered proteins

Daniel B. Roche, Damiano Piovesan, A. Dunker, 2016, Nucleic Acids Res..

DisProt 7.0: a major update of the database of disordered proteins

Daniel B. Roche, Damiano Piovesan, A. Dunker, 2016, Nucleic acids research.

A Study on the Nature of SARS-CoV-2 Using the Shell Disorder Models: Reproducibility, Evolution, Spread, and Attenuation

James A. Foster, A. Dunker, V. Uversky, 2022, Biomolecules.

Intrinsically disordered proteins and intrinsically disordered protein regions.

A Keith Dunker, Christopher J Oldfield, Christopher J. Oldfield, 2014, Annual review of biochemistry.

Mining α -helix-forming molecular recognition features ( α -MoRFs) with cross species sequence alignments †

Christopher J. Oldfield, P. Romero, A. Dunker, 2008 .

Intrinsically Disordered Proteins Link Alternative Splicing and Post-translational Modifications to Complex Cell Signaling and Regulation.

A. Dunker, Suwen Zhao, Jianhong Zhou, 2018, Journal of molecular biology.

Improving Protein Secondary-Structure Prediction by Predicting Ends of Secondary-Structure Segments

Zoran Obradovic, A. Keith Dunker, Uros Midic, 2005, IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.

Engineering productive enzyme confinement.

A. Dunker, Ariel Fernández, 2007, Trends in biotechnology.

Overlapping Genes Produce Proteins with Unusual Sequence Properties and Offer Insight into De Novo Protein Creation

A. Keith Dunker, David G. Karlin, P. Romero, 2009, Journal of Virology.

Intrinsically Disordered Protein Analysis

A. Dunker, V. Uversky, J. Walker, 2012, Methods in Molecular Biology.

A Novel Strategy for the Development of Vaccines for SARS-CoV-2 (COVID-19) and Other Viruses Using AI and Viral Shell Disorder

James A. Foster, A. Dunker, V. Uversky, 2020, Journal of proteome research.

DisProt: a database of protein disorder

Zoran Obradovic, Slobodan Vucetic, Vladimir Vacic, 2005, Bioinform..

Classification and knowledge discovery in protein databases

Nitesh V. Chawla, Zoran Obradovic, Predrag Radivojac, 2004, J. Biomed. Informatics.

Multiparametric analysis of intrinsically disordered proteins: looking at intrinsic disorder through compound eyes.

A Keith Dunker, Vladimir N Uversky, A. Dunker, 2012, Analytical chemistry.

DisProt: the Database of Disordered Proteins

Zoran Obradovic, Vladimir Vacic, Peter Tompa, 2006, Nucleic Acids Res..

Interplay between estrogen receptor and AKT in Estradiol-induced alternative splicing

A. Dunker, J. Carroll, V. Uversky, 2013, BMC Medical Genomics.

Close encounters of the third kind: disordered domains and the interactions of proteins

Monika Fuxreiter, Peter Tompa, A. Keith Dunker, 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.

The structural and functional signatures of proteins that undergo multiple events of post‐translational modification

Predrag Radivojac, Fuxiao Xin, Wei‐Lun Hsu, 2014, Protein science : a publication of the Protein Society.

Archaic chaos: intrinsically disordered proteins in Archaea

Bin Xue, Robert W. Williams, A. Keith Dunker, 2010, BMC Systems Biology.

Intrinsic Disorder and Prote in Modifications: Building an SVM Predictor for Methylation

Predrag Radivojac, A. Keith Dunker, Kenneth Daily, 2005, 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.

Isolation and Characterization of cDNAs Expressed in the Early Stages of Flavonol-Induced Pollen Germination in Petunia 1

A. Dunker, E. Garner, V. Guyon, 2000 .

2K09 and thereafter : the coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research

Yunlong Liu, A Keith Dunker, Ruzena Bajcsy, 2010, BMC Genomics.

The emerging genomics and systems biology research lead to systems genomics studies

Jun S. Liu, Jack Y. Yang, A. Niemierko, 2014, BMC Genomics.

MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins

Lukasz A. Kurgan, Bin Xue, A. Keith Dunker, 2012, Bioinform..

Short Linear Motifs recognized by SH2, SH3 and Ser/Thr Kinase domains are conserved in disordered protein regions

A Keith Dunker, Zoran Obradovic, Siyuan Ren, 2008, BMC Genomics.

Protein sequence alignment and structural disorder: a substitution matrix for an extended alphabet

Zoran Obradovic, A. Keith Dunker, Uros Midic, 2009, StReBio '09.

Intrinsically Disordered Proteins Link Alternative Splicing and Post-translational Modifications to Complex Cell Signaling and Regulation.

A Keith Dunker, Jianhong Zhou, Suwen Zhao, 2018, Journal of molecular biology.

The protein trinity—linking function and disorder

Zoran Obradovic, A. Keith Dunker, Z. Obradovic, 2001, Nature Biotechnology.

Identification of genes and pathways involved in kidney renal clear cell carcinoma

Yunlong Liu, Dong Xu, Hamid R. Arabnia, 2014, BMC Bioinformatics.

The Protein Non-Folding Problem: Amino Acid Determinants of Intrinsic Order and Disorder

Zoran Obradovic, A. Keith Dunker, Celeste J. Brown, 2000, Pacific Symposium on Biocomputing.

A functionally required unfoldome from the plant kingdom: intrinsically disordered N-terminal domains of GRAS proteins are involved in molecular recognition during plant development

A. Keith Dunker, Vladimir N. Uversky, William T. Jones, 2011, Plant Molecular Biology.

Length-dependent prediction of protein intrinsic disorder

Zoran Obradovic, Slobodan Vucetic, Predrag Radivojac, 2006, BMC Bioinformatics.

The Roles of Intrinsic Disorder in Orchestrating the Wnt-Pathway

A. Dunker, V. Uversky, B. Xue, 2012, Journal of biomolecular structure & dynamics.

Intrinsically disordered proteins play diverse roles in cell signaling

A. Dunker, V. Uversky, S. Bondos, 2022, Cell communication and signaling : CCS.

Intrinsic Disorder in the Protein Data Bank

A. Keith Dunker, Marc S. Cortese, Vladimir N. Uversky, 2007, Journal of biomolecular structure & dynamics.

Protein disorder and the evolution of molecular recognition: theory, predictions and observations.

A K Dunker, P. Romero, Z. Obradovic, 1998, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

Identifying disordered regions in proteins from amino acid sequence

A.K. Dunker, Z. Obradovic, P. Romero, 1997, Proceedings of International Conference on Neural Networks (ICNN'97).

Utilization of protein intrinsic disorder knowledge in structural proteomics.

A Keith Dunker, Christopher J Oldfield, Christopher J. Oldfield, 2013, Biochimica et biophysica acta.

DescribePROT: database of amino acid-level protein structure and function predictions

A Keith Dunker, Zoran Obradovic, Lukasz Kurgan, 2020, Nucleic Acids Res..

Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms

Yunlong Liu, Dong Xu, Hamid R. Arabnia, 2014, BMC Bioinformatics.

What’s in a name? Why these proteins are intrinsically disordered

Sonia Longhi, Burkhard Rost, Zoran Obradovic, 2013, Intrinsically disordered proteins.

Shell disorder, immune evasion and transmission behaviors among human and animal retroviruses.

A. Dunker, V. Uversky, G. Goh, 2015, Molecular bioSystems.

Alternative splicing of intrinsically disordered regions and rewiring of protein interactions.

A Keith Dunker, Alex Bateman, Monika Fuxreiter, 2013, Current opinion in structural biology.

Intrinsically Disordered Proteins: An Update

Zoran Obradovic, Jack Y. Yang, A. Keith Dunker, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

Molecular recognition features (MoRFs) in three domains of life.

A Keith Dunker, Lukasz Kurgan, Jing Yan, 2016, Molecular bioSystems.

TOP-IDP-scale: a new amino acid scale measuring propensity for intrinsic disorder.

A Keith Dunker, Vladimir N Uversky, Jingwei Meng, 2008, Protein and peptide letters.

D2P2: database of disordered protein predictions

Lukasz A. Kurgan, Mohamed F. Ghalwash, Zoran Obradovic, 2012, Nucleic Acids Res..

Critical assessment of protein intrinsic disorder prediction

M. Y. Lobanov, David C. Jones, K. Paliwal, 2021, Nature Methods.

Introduction to intrinsically disordered proteins and regions

Christopher J. Oldfield, A. Dunker, Lukasz Kurgan, 2019, Intrinsically Disordered Proteins.

Uncertainty analysis in protein disorder prediction.

Mohamed F Ghalwash, A Keith Dunker, Zoran Obradović, 2012, Molecular bioSystems.

Prediction of intrinsic disorder and its use in functional proteomics.

A Keith Dunker, Zoran Obradovic, Predrag Radivojac, 2007, Methods in molecular biology.

Optimizing Long Intrinsic Disorder Predictors with Protein Evolutionary Information

Zoran Obradovic, Slobodan Vucetic, Predrag Radivojac, 2005, J. Bioinform. Comput. Biol..

Comparing predictors of disordered protein.

A K Dunker, C. Brown, Z. Obradovic, 2000, Genome informatics. Workshop on Genome Informatics.

Composition Profiler: a tool for discovery and visualization of amino acid composition differences

Vladimir Vacic, Stefano Lonardi, A. Keith Dunker, 2007, BMC Bioinformatics.

Prostate-associated gene 4 (PAGE4), an intrinsically disordered cancer/testis antigen, is a novel therapeutic target for prostate cancer

A. Dunker, J. Orban, Prakash Kulkarni, 2016, Asian journal of andrology.

A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants

Dong Xu, Zoran Obradovic, A. Keith Dunker, 2009, BICoB.

A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis

Lilia M. Iakoucheva, Richard Bonneau, Kahn Rhrissorrakrai, 2008, Cell.

The case for intrinsically disordered proteins playing contributory roles in molecular recognition without a stable 3D structure

A. Keith Dunker, Vladimir N. Uversky, A. Dunker, 2013, F1000 biology reports.

Structural Disorder in Matrix Proteins of HIV-Related Viruses

A. Dunker, V. Uversky, B. Xue, 2011 .

In-silico prediction of disorder content using hybrid sequence representation

Lukasz A. Kurgan, Yaoqi Zhou, Tuo Zhang, 2011, BMC Bioinformatics.

Large-Scale Identification of Intrinsically Disordered Proteins

Marc S. Cortese, A. Dunker, P. Tompa, 2010 .

SPA: Short peptide analyzer of intrinsic disorder status of short peptides

A. Dunker, V. Uversky, B. Xue, 2010, Genes to cells : devoted to molecular & cellular mechanisms.

CDF it all: Consensus prediction of intrinsically disordered proteins based on various cumulative distribution functions

A Keith Dunker, Christopher J Oldfield, Christopher J. Oldfield, 2009, FEBS letters.

A comparative analysis of viral matrix proteins using disorder predictors

A Keith Dunker, Vladimir N Uversky, Gerard Kian-Meng Goh, 2008, Virology Journal.

Signal transduction via unstructured protein conduits.

A Keith Dunker, Vladimir N Uversky, A. Dunker, 2008, Nature chemical biology.

Intrinsic Disorder in Protein-Protein Interaction Networks: Case Studies of Complexes Involving p53 and 14-3-3

Jack Y. Yang, A. Keith Dunker, Vladimir N. Uversky, 2007, BIOCOMP.

Protein intrinsic disorder and human papillomaviruses: increased amount of disorder in E6 and E7 oncoproteins from high risk HPVs.

A Keith Dunker, Christopher J Oldfield, Christopher J. Oldfield, 2006, Journal of proteome research.

Conservation of intrinsic disorder in protein domains and families: II. functions of conserved disorder.

A Keith Dunker, Vladimir N Uversky, Pedro Romero, 2006, Journal of proteome research.

Computational, Experimental, and Clinical Evidence of a Specific but Peculiar Evolutionary Nature of (COVID-19) SARS-CoV-2

James A. Foster, A. Dunker, V. Uversky, 2022, Journal of proteome research.

Erratum to: Improving protein order-disorder classification using charge-hydropathy plots

Li Shen, Fei Huang, Bin Xue, 2015, BMC Bioinformatics.

Improving protein order-disorder classification using charge-hydropathy plots

Fei Huang, A. Keith Dunker, Wei-Lun Hsu, 2014, BMC bioinformatics.

Intrinsic Protein Disorder and Protein-Protein Interactions

Fei Huang, Bin Xue, A. Keith Dunker, 2012, Pacific Symposium on Biocomputing.

Intrinsic protein disorder and protein-protein interactions.

Wei-Lun Hsu, Vladimir N. Uversky, Christopher J. Oldfield, 2011, PSB 2011.

Malleable Machines in Transcription Regulation: The Mediator Complex

István Simon, A. Keith Dunker, Vladimir N. Uversky, 2008, PLoS Comput. Biol..

Intrinsic disorder in pathogenic and non-pathogenic microbes: discovering and analyzing the unfoldomes of early-branching eukaryotes.

A Keith Dunker, Predrag Radivojac, Vladimir N Uversky, 2008, Molecular bioSystems.

DISORDER AND FLEXIBILITY IN PROTEIN STRUCTURE AND FUNCTION

A. Keith Dunker, Malin M. Young, Clay Bracken, 2000 .

Computational Prediction of Intrinsic Disorder in Protein Sequences with the disCoP Meta-predictor.

A Keith Dunker, Lukasz Kurgan, Christopher J Oldfield, 2020, Methods in molecular biology.

Structural Disorder in Proteins from Influenza Virus

A. Dunker, V. Uversky, B. Xue, 2011 .

On the roles of intrinsically disordered proteins and regions in cell communication and signaling

A. Dunker, V. Uversky, S. Bondos, 2021, Cell Communication and Signaling.

Understanding Viral Transmission Behavior via Protein Intrinsic Disorder Prediction: Coronaviruses

A. Dunker, V. Uversky, G. Goh, 2012, Journal of pathogens.

Assessing secondary structure assignment of protein structures by using pairwise sequence‐alignment benchmarks

A Keith Dunker, Yaoqi Zhou, Wei Zhang, 2008, Proteins.

pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins

Dmitri I. Svergun, Pierre Lebrun, David S. Wishart, 2013, Nucleic Acids Res..

Simultaneous quantification of protein order and disorder.

Sonia Longhi, Silvio C. E. Tosatto, A Keith Dunker, 2017, Nature chemical biology.

Uncovering the unfoldome: enriching cell extracts for unstructured proteins by acid treatment.

A. Dunker, M. Cortese, V. Uversky, 2005, Journal of proteome research.

HIV Vaccine Mystery and Viral Shell Disorder

James A. Foster, A. Dunker, V. Uversky, 2019, Biomolecules.

Mining alpha-helix-forming molecular recognition features with cross species sequence alignments.

A Keith Dunker, Christopher J Oldfield, Christopher J. Oldfield, 2007, Biochemistry.

The number of cell types, information content, and the evolution of complex multicellularity

K. Niklas, A. Dunker, Edward D. Cobb, 2014 .

Improving protein order-disorder classification using charge-hydropathy plots

Christopher J. Oldfield, Fei Huang, P. Romero, 2014, BMC Bioinformatics.

Subclassifying Disordered Proteins by the CH-CDF Plot Method

Fei Huang, Bin Xue, A. Keith Dunker, 2011, Pacific Symposium on Biocomputing.

Prediction of Boundaries Between Intrinsically Ordered and Disordered Protein Regions

Zoran Obradovic, Predrag Radivojac, A. Keith Dunker, 2002, Pacific Symposium on Biocomputing.

Enzyme catalysis prior to aromatic residues: Reverse engineering of a dephospho‐CoA kinase

A. Dunker, J. Vondrášek, P. Srb, 2021, Protein science : a publication of the Protein Society.

Improving Sequence Alignments For Intrinsically Disordered Proteins

Zoran Obradovic, Predrag Radivojac, A. Keith Dunker, 2001, Pacific Symposium on Biocomputing.

Characterization of intrinsically disordered regions in proteins informed by human genetic diversity

A. Dunker, S. Iqbal, Mohammad Sohel Rahman, 2022, PLoS Comput. Biol..

Entropy, Fluctuations, and Disordered Proteins

Eshel Faraggi, Robert L. Jernigan, A. Keith Dunker, 2019, Entropy.

Regulating Protein Function by Delayed Folding.

A. Dunker, Jianhong Zhou, 2018, Structure.

Identifying repeated structural elements in folded proteins

A. Keith Dunker, Richard J. Douthart, R. T. Miller, 1994, 1994 Proceedings of the Twenty-Seventh Hawaii International Conference on System Sciences.

Disorder to Order, Nonlife to Life: In the Beginning There Was a Mistake

E. Trifonov, A. Dunker, E. Mauro, 2012 .

Per Aspera ad Chaos: Vladimir Uversky’s Odyssey through the Strange World of Intrinsically Disordered Proteins

A. Dunker, S. Longhi, S. Brocca, 2023, Biomolecules.

Identification of Intrinsic Disorder in Complexes from the Protein Data Bank

Jianhong Zhou, Bairong Shen, Fei Huang, 2018, 2018 IEEE 8th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Shell Disorder Analysis Suggests That Pangolins Offered a Window for a Silent Spread of an Attenuated SARS-CoV-2 Precursor among Humans

James A. Foster, A. Dunker, V. Uversky, 2020, Journal of proteome research.

The complexity of disorder

P. Romero, Z. Obradovic, A. Dunker, 1999 .

Feature Selection Filters Based on the Permutation Test

Zoran Obradovic, Slobodan Vucetic, Predrag Radivojac, 2004, ECML.

Rigidity of the Outer Shell Predicted by a Protein Intrinsic Disorder Model Sheds Light on the COVID-19 (Wuhan-2019-nCoV) Infectivity

A Keith Dunker, Vladimir N Uversky, Gerard Kian-Meng Goh, 2020, Biomolecules.

Regions of intrinsic disorder help identify a novel nuclear localization signal in Toxoplasma gondii histone acetyltransferase TgGCN5-B.

A. Dunker, V. Uversky, Stacy E Dixon, 2011, Molecular and biochemical parasitology.

Lipopolysaccharide treatment induces genome-wide pre-mRNA splicing pattern changes in mouse bone marrow stromal stem cells

A. Dunker, Weixing Feng, Yunlong Liu, 2016, BMC Genomics.

Potato virus A genome-linked protein VPg is an intrinsically disordered molten globule-like protein with a hydrophobic core.

A. Dunker, V. Uversky, P. Permi, 2008, Virology.

Intrinsic disorder in cell-signaling and cancer-associated proteins.

L. Iakoucheva, Z. Obradovic, A. Dunker, 2002, Journal of molecular biology.

Critical assessment of protein intrinsic disorder prediction

Silvio C. E. Tosatto, Marco Necci, Damiano Piovesan, 2020, Nature Methods.

Sequence Data Analysis for Long Disordered Regions Prediction in the Calcineurin Family.

Romero, Obradovic, Dunker, 1997, Genome informatics. Workshop on Genome Informatics.

Determination of the secondary structure of proteins from the amide I band of the laser Raman spectrum.

A. Dunker, A. Dunker, R. Williams, 1981, Journal of molecular biology.

Aromatic and Cystine Side-Chain Circular Dichroism in Proteins

A. Dunker, A. Dunker, R. Woody, 1996 .

Sequences and topology: disorder, modularity, and post/pre translation modification.

A Keith Dunker, Julian Gough, J. Gough, 2013, Current opinion in structural biology.

Correlating Flavivirus virulence and levels of intrinsic disorder in shell proteins: protective roles vs. immune evasion.

A. Dunker, V. Uversky, G. Goh, 2016, Molecular bioSystems.

Clusterin, a binding protein with a molten globule-like region.

C. Brown, A. Dunker, A. Dunker, 2001, Biochemistry.

Understanding Protein Non-folding

A. Dunker, V. Uversky, 1985 .

Correlating Flavivirus virulence and levels of intrinsic disorder in shell proteins: protective roles vs. immune evasion.

A. Dunker, V. Uversky, G. Goh, 2016, Molecular bioSystems.

Understanding protein non-folding.

A. Dunker, V. Uversky, 2010, Biochimica et biophysica acta.

Calmodulin signaling: Analysis and prediction of a disorder‐dependent molecular recognition

P. Radivojac, S. Vucetic, Z. Obradovic, 2006, Proteins.

Intelligent Data Analysis for Protein Disorder Prediction

Zoran Obradovic, A. Keith Dunker, Pedro Romero, 2000, Artificial Intelligence Review.

Conservation of intrinsic disorder in protein domains and families: II. functions of conserved disorder.

P. Romero, A. Dunker, V. Uversky, 2006, Journal of proteome research.

Controlled Chaos

A. Dunker, V. Uversky, 2008, Science.

The orderly chaos of proteins.

A Keith Dunker, A. Dunker, R. Kriwacki, 2011, Scientific American.

A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis

Richard Bonneau, D. Koller, L. Iakoucheva, 2008, Cell.

Sequence fingerprints distinguish erroneous from correct predictions of Intrinsically Disordered Protein Regions

Konda Mani Saravanan, A. Dunker, S. Krishnaswamy, 2017, bioRxiv.

Predicting Disordered Regions from Amino Acid Sequence: Common Themes Despite Differing Structural Characterization.

Obradovic, Dunker, P. Romero, 1998, Genome informatics. Workshop on Genome Informatics.