P. Flicek
发表
William Stafford Noble,
Nancy R. Zhang,
Stephen C. J. Parker,
2007,
Nature.
D. Koller,
P. Deloukas,
S. Tavaré,
2007,
Nature Genetics.
G. McVean,
Z. Iqbal,
P. Flicek,
2011,
Nature Genetics.
P. Flicek,
B. Ballester,
Nathan Johnson,
2010,
BMC Genomics.
Raymond K. Auerbach,
William Stafford Noble,
Stephen C. J. Parker,
2012,
Nature.
R. E. Tully,
E. Birney,
F. Cunningham,
2010,
Genome Medicine.
Pedro G. Ferreira,
M. Pirinen,
P. Donnelly,
2013,
Nature.
Ryan L. Collins,
Mark J. P. Chaisson,
Peter A. Audano,
2017,
bioRxiv.
Gabor T. Marth,
Hugo Y. K. Lam,
Miriam K. Konkel,
2015,
Nature.
E. Birney,
M. Ashburner,
S. Lewis,
2006,
Genome Biology.
M. Brent,
P. Flicek,
Paul Flicek,
2006,
Genome Biology.
Shane C. Dillon,
E. Birney,
Z. Weng,
2007,
Genome research.
Michael D. Wilson,
Petra C. Schwalie,
D. Odom,
2010,
Science.
Ronald P. Schuyler,
E. Raineri,
S. Heath,
2017
.
Ronald P. Schuyler,
E. Raineri,
S. Heath,
2016
.
Ronald P. Schuyler,
E. Raineri,
S. Heath,
2016,
Cell reports.
Christopher D. Brown,
Katherine H. Huang,
Christopher M. Lee,
2019,
Cell.
Steve D. M. Brown,
Julius O. B. Jacobsen,
Jacqueline K. White,
2017,
Nature Genetics.
Karen Eilbeck,
Paul Flicek,
Fiona Cunningham,
2010,
Genome Biology.
Gabor T. Marth,
Uday S. Evani,
H. Kang,
2013,
Science.
Boris Lenhard,
Paul Flicek,
Rachel Patton McCord,
2013,
Genome research.
J. L. Mateo,
Debbie L C van den Berg,
P. Robson,
2015,
Genome research.
Paul Flicek,
Stefan Engelen,
Adriana Alberti,
2019,
Molecular ecology resources.
Magnus Rattray,
Thomas Lengauer,
Haralampos Karanikas,
2016,
Genome Medicine.
R. Durbin,
E. Birney,
T. Hubbard,
2008,
Nature Biotechnology.
Gary D Bader,
Benjamin J. Raphael,
Joshua M. Stuart,
2010,
Nature.
Michael D. Wilson,
Andre J. Faure,
W. McLaren,
2014,
eLife.
J. T. Erichsen,
Tim F. Rayner,
D. Odom,
2015,
Cell.
Bianca M. Schmitt,
D. Odom,
P. Flicek,
2015,
Genome research.
Matthew T. Maurano,
Warren A. Cheung,
Klaudia Walter,
2016,
Cell.
Paul Flicek,
Michael D. Wilson,
Stephen Watt,
2012
.
S. Searle,
G. Weinstock,
R. Gibbs,
2013,
Genome Biology.
D. Odom,
P. Flicek,
D. Villar,
2014,
Nature Reviews Genetics.
Mark Gerstein,
Kevin Struhl,
Zhiping Weng,
2008,
Genome research.
Peter W. Harrison,
G. Cochrane,
P. Flicek,
2018,
Animal genetics.
Steven J. M. Jones,
Nuno A. Fonseca,
Icgc,
2020,
Nature.
The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery
Steven J. M. Jones,
Marcel H. Schulz,
Richard A. Moore,
2016,
Cell.
Steve D. M. Brown,
Lisa X. Yu,
Jacqueline K. White,
2016,
Nature.
Steve D. M. Brown,
David G. Melvin,
P. Flicek,
2012,
Mammalian Genome.
Brendan W. Vaughan,
R. Leinonen,
S. Sherry,
2012,
Nature Methods.
P. Flicek,
M. Reinders,
S. Gräf,
2010,
Molecular cell.
Petra C. Schwalie,
Andre J. Faure,
D. Odom,
2013,
Genome Biology.
P. Flicek,
A. Kwitek,
David Thybert,
2017,
bioRxiv.
E. Birney,
R. Guigó,
M. Bihoreau,
2008,
Nature Genetics.
Thomas M. Keane,
A. Dominiczak,
E. Petretto,
2013
.
Michael D. Wilson,
D. Odom,
J. Marioni,
2013,
Cell.
S. Heath,
P. Flicek,
A. Merkel,
2019,
Cell reports.
P. Flicek,
Paul Flicek,
2009,
Genome Biology.
Petra C. Schwalie,
D. Odom,
P. Flicek,
2010,
Genome research.
E. Birney,
P. Flicek,
I. Holmes,
2008,
Genome research.
Albert J. Vilella,
Andrew D. Yates,
S. Searle,
2016,
Database : the journal of biological databases and curation.
Tom R. Gaunt,
Hashem A. Shihab,
Gail P. Clement,
2016
.
Gary D Bader,
Lincoln D. Stein,
C. Sander,
2013,
Nature Methods.
P. Taberlet,
F. Pompanon,
P. Flicek,
2018,
Nature Communications.
E. Zeggini,
G. Ritchie,
I. Dunham,
2014,
Nature Methods.
Albert J. Vilella,
Gregory E. Jordan,
Petra C. Schwalie,
2012,
Nature.
August E. Woerner,
Matthew W. Hahn,
Miriam K. Konkel,
2014
.
Michael D. Wilson,
Petra C. Schwalie,
D. Odom,
2012,
Cell.
Osagie G. Izuogu,
Fergal J. Martin,
D. Odom,
2020,
bioRxiv.
Ronald P. Schuyler,
A. Valencia,
E. Raineri,
2015,
Nature Genetics.
E. Raineri,
S. Heath,
R. Siebert,
2015,
Genome research.
R. Guigó,
D. Torrents,
S. Heath,
2018,
Nature Medicine.
E. Birney,
N. Carter,
T. Hubbard,
2008,
Genome research.
Boris Lenhard,
Paul Flicek,
Thomas Carroll,
2015
.
Paul Flicek,
Laurence Ettwiller,
Gregory E. Crawford,
2015,
Cell reports.
Li Ding,
Amina Noor,
Ali Bashir,
2018,
Nature Communications.
Arcadi Navarro,
Søren Brunak,
Jaap Heringa,
2019,
Nature Reviews Genetics.
Pedro G. Ferreira,
M. Rivas,
R. Guigó,
2016,
Scientific Reports.
Paul Flicek,
Simon Heath,
Angelika Merkel,
2015,
Genome research.
Warren A. Cheung,
R. Siebert,
P. Flicek,
2015,
Genome Biology.
Jonathan M. Mudge,
Osagie G. Izuogu,
Fergal J. Martin,
2020,
Haematologica.
Jonathan M. Mudge,
Osagie G. Izuogu,
Fergal J. Martin,
2019,
bioRxiv.
Paul Flicek,
Kristian Cibulskis,
Gabor T Marth,
2011,
Genome Biology.
Mark W. Moore,
J. Eppig,
M. Ringwald,
2016
.
Mark Gerstein,
Paul Flicek,
Rob Knight,
2011,
Genome Biology.
Mark Gerstein,
Benedict Paten,
Paul Flicek,
2017,
bioRxiv.
Son K. Pham,
Ian T. Fiddes,
Bronwen L. Aken,
2017,
bioRxiv.
William T. Harvey,
Ira M. Hall,
Ryan E. Mills,
2020,
bioRxiv.
Colin N. Dewey,
James B. Brown,
Anason S. Halees,
2007
.
R. Durbin,
R. Wilson,
T. Hubbard,
2016,
bioRxiv.
Steve D. M. Brown,
N. Karp,
J. Mason,
2017,
Nature Communications.
Stephen R. Williams,
Hagen U. Tilgner,
A. Frankish,
2020,
bioRxiv.
Andrew C. Nelson,
P. Flicek,
D. Stemple,
2014,
BMC Biology.
Klaudia Walter,
K. Downes,
Avik Datta,
2019,
bioRxiv.
John P. Didion,
T. A. Bell,
L. McMillan,
2016,
Genetics.
D. Odom,
P. Flicek,
J. Horvath,
2017,
bioRxiv.
Rare Variant Analysis of Human and Rodent Obesity Genes in Individuals with Severe Childhood Obesity
Tom R. Gaunt,
Thomas M. Keane,
Hashem A. Shihab,
2017,
Scientific Reports.
Gabor T. Marth,
Shane A. McCarthy,
Alissa M. Resch,
2015,
Nature.
P. Flicek,
L. Clarke,
Magali Ruffier,
2021
.
Jonathan M. Mudge,
Dmitri D. Pervouchine,
J. Harrow,
2019,
npj Genomic Medicine.
Jonathan M. Mudge,
Dmitri D. Pervouchine,
J. Harrow,
2019,
bioRxiv.
P. Flicek,
A. Kwitek,
David Thybert,
2017,
bioRxiv.
Wan Choi,
Oliver Hofmann,
Roland Eils,
2017,
bioRxiv.
Anirvan M. Sengupta,
K. Rohr,
R. Eils,
2015,
BMC Genomics.
Steve D. M. Brown,
Jacqueline K. White,
F. Mammano,
2020,
Genome Biology.
Tom R. Gaunt,
Thomas M. Keane,
Hashem A. Shihab,
2019
.
Tom R. Gaunt,
Hashem A. Shihab,
Gail P. Clement,
2018,
bioRxiv.
E. Giné,
E. Raineri,
W. Wilson,
2016,
Cancer cell.
Thomas M. Keane,
Ian T. Fiddes,
M. Gerstein,
2018,
bioRxiv.
William J. Astle,
Asif U. Tamuri,
Sjoert B. G. Jansen,
2014
.
Martin S. Taylor,
Andrew D. Yates,
Tim F. Rayner,
2019,
bioRxiv.
Martin S. Taylor,
Andrew D. Yates,
Tim F. Rayner,
2019,
Nature.
A. Valencia,
S. Heath,
W. Ouwehand,
2018,
bioRxiv.
Thomas M. Keane,
Daniel L. Koller,
R. Gibbs,
2014,
Scientific Data.
Jonathan M. Mudge,
D. Odom,
P. Flicek,
2020,
bioRxiv.
Ian T. Fiddes,
M. Gerstein,
J. Harrow,
2020,
Nature Communications.
Martin S. Taylor,
Michael D. Nicholson,
D. Odom,
2022,
bioRxiv.
Michael D. Wilson,
Petra C. Schwalie,
D. Odom,
2022
.
Daniel L. Koller,
R. Gibbs,
M. Bihoreau,
2014,
Scientific Data.
Thomas M. Keane,
Daniel L. Koller,
R. Gibbs,
2014,
Scientific Data.
William T. Harvey,
Jordan M. Eizenga,
Adam M. Novak,
2022,
bioRxiv.
D. Koller,
P. Deloukas,
S. Tavaré,
2007,
Nature Genetics.
Steve D. M. Brown,
Jacqueline K. White,
Mark W. Moore,
2017,
Nature.
John P. Didion,
T. A. Bell,
L. McMillan,
2016,
Genetics.
Jonathan M. Cairns,
D. Zerbino,
W. Ouwehand,
2016,
Cell.
Inanç Birol,
Edwin Cuppen,
Paul Flicek,
2010,
Genome research.
Victor de la Torre,
A. Valencia,
D. Torrents,
2022
.
Jonathan M. Mudge,
M. Gerstein,
A. Frankish,
2018,
bioRxiv.
Roland Eils,
Paul Flicek,
Helene Kretzmer,
2015,
Nature Genetics.
E. Campo,
P. Flicek,
F. Prósper,
2019,
bioRxiv.
Paul Flicek,
Rory Stark,
Michael D. Wilson,
2013,
Molecular cell.
D. Odom,
P. Flicek,
J. Taipale,
2022,
bioRxiv.
Maria Cerezo,
Paul Flicek,
Yaniv Erlich,
2016,
Nature Genetics.
Son K. Pham,
Thomas M. Keane,
Fengtang Yang,
2016,
bioRxiv.
Jonathan M. Mudge,
Nicholas T. Ingolia,
A. Frankish,
2022,
Nature Biotechnology.
Tom R. Gaunt,
Thomas M. Keane,
Hashem A. Shihab,
2019,
Nature Communications.
E. Birney,
S. Brunak,
H. Parkinson,
2019,
Nature Reviews Genetics.
Gail Clement,
Jie Huang,
Antonio Ciampi,
2014,
Nature Communications.
James C. Wright,
Jonathan M. Mudge,
Andrew D. Yates,
2022,
Nucleic Acids Res..
Albert J. Vilella,
Andrew D. Yates,
S. Searle,
2016,
Database J. Biol. Databases Curation.
William T. Harvey,
Rupesh K. Kesharwani,
Mitchell R. Vollger,
2022,
bioRxiv.
Bret A. Moore,
Jason D. Heaney,
F. Mammano,
2022,
Scientific Reports.
Tom R. Gaunt,
Thomas M. Keane,
Hashem A. Shihab,
2018,
bioRxiv.
P. Flicek,
S. Mikalsen,
J. A. Jacobsen,
2020,
Journal of fish biology.
Jonathan M. Mudge,
Andrew D. Yates,
José Carlos Marugán,
2022,
Nucleic Acids Res..
D. Odom,
P. Flicek,
Klara Stefflova,
2019,
Genome Biology.
Klaudia Walter,
K. Downes,
Avik Datta,
2021,
Nature Communications.
A. Valencia,
S. Heath,
W. Ouwehand,
2018,
Cell reports.
Tom R. Gaunt,
Klaudia Walter,
Nicholas J Timpson,
2015,
Nature Communications.
D. Koller,
P. Deloukas,
S. Tavaré,
2007
.
F. Cunningham,
W. McLaren,
P. Flicek,
2018,
Nature Communications.
Paul Flicek,
Ernesto Lowy,
Anne-Marie Tassé,
2016,
Nucleic Acids Res..
A gene regulatory network directed by zebrafish No tail accounts for its roles in mesoderm formation
Paul Flicek,
Damian Keefe,
Michael J Gilchrist,
2009,
Proceedings of the National Academy of Sciences.
Nicola J. Rinaldi,
Ian C. McDowell,
Christopher D. Brown,
2017,
Nature.
Vivien A. C. Schoonenberg,
M. Netea,
S. Heath,
2016,
Cell.
Kenny Q. Ye,
Mauricio O. Carneiro,
Francisco M. De La Vega,
2012,
Nature.
Mark Gerstein,
Tomás Di Domenico,
Jane Loveland,
2018,
Nucleic Acids Res..
Randy J. Read,
William J. Astle,
Paul Flicek,
2014,
Science.
Petra C. Schwalie,
Andre J. Faure,
D. Odom,
2013,
Genome Biology.
Lusy Handoko,
Paul Flicek,
Thomas LaFramboise,
2010,
PLoS genetics.
P. Flicek,
G. Crawford,
Chia-Lin Wei,
2010
.
Jun S. Song,
Xiaoqin,
Xiao-qin,
2008
.
Osagie G. Izuogu,
Fergal J. Martin,
D. Odom,
2021,
Genome biology.
F. Cunningham,
W. McLaren,
G. Ritchie,
2016,
Genome Biology.
Helen E. Parkinson,
Paul Flicek,
Laura Clarke,
2016,
Nucleic Acids Res..
Gao Wang,
Mary Goldman,
Brian Craft,
2016,
Nature.
Magnus Rattray,
Thomas Lengauer,
Haralampos Karanikas,
2016,
Genome Medicine.
Tim F. Rayner,
Bianca M. Schmitt,
D. Odom,
2016,
Nature Communications.
Bianca M. Schmitt,
D. Odom,
J. Marioni,
2016
.
Jonathan M. Mudge,
Nicholas T. Ingolia,
M. Gerstein,
2021,
bioRxiv.
Gautier Koscielny,
Henrik Westerberg,
Damian Smedley,
2013,
Nucleic Acids Res..
The International Genome Sample Resource (IGSR) collection of open human genomic variation resources
Paul Flicek,
Emily Perry,
Susan Fairley,
2019,
Nucleic Acids Res..
Christopher D. Brown,
Katherine H. Huang,
Christopher M. Lee,
2021,
Cell.
Ira M. Hall,
Wayne E. Clarke,
Allison A. Regier,
2021,
Cell.
Damian Smedley,
Mary E. Dickinson,
Helen E. Parkinson,
2019,
bioRxiv.
E. Birney,
W. McLaren,
K. Rockland,
2010
.
Paul Flicek,
P. Flicek,
2007,
Genome Biology.
Nuno A. Fonseca,
Gary D Bader,
Benjamin J. Raphael,
2020,
Nature.
William T. Harvey,
Ira M. Hall,
Ryan E. Mills,
2021,
Science.
Paul Flicek,
Bo Li,
Bronwen L. Aken,
2015,
Genome Biology.
James E. Allen,
P. Flicek,
B. Contreras-Moreira,
2021,
The plant genome.
James E. Allen,
Paul Flicek,
Guy Naamati,
2021,
bioRxiv.
Jan H Bergmann,
Paul Flicek,
John C Marioni,
2014,
Developmental cell.
Thomas Lengauer,
A. Valencia,
R. Guigó,
2017,
bioRxiv.
Joshua F. McMichael,
Hanlee P. Ji,
Adam M. Novak,
2022,
Nature.
Paul Flicek,
Ian Dunham,
Shane C. Dillon,
2009,
Genome research.
James C. Wright,
Jonathan M. Mudge,
Andrew D. Yates,
2020,
Nucleic Acids Res..
Paul Flicek,
Steve D. M. Brown,
Hiroshi Masuya,
2018,
Nature Communications.
Alison L. Van Eenennaam,
Hans H. Cheng,
P. Flicek,
2021,
Nature Communications.
D. Odom,
P. Flicek,
J. Horvath,
2016,
Genome Biology.
Michael D. Wilson,
Petra C. Schwalie,
Andre J. Faure,
2012,
Genome research.
P. Flicek,
M. Lawniczak,
P. Korlević,
2021,
bioRxiv.
P. Flicek,
G. Maccari,
D. J. Barker,
2022,
Nucleic Acids Res..
Alfonso Valencia,
David Richardson,
Romina Royo,
2016,
Cell systems.
Rare Variant Analysis of Human and Rodent Obesity Genes in Individuals with Severe Childhood Obesity
Tom R. Gaunt,
Thomas M. Keane,
Hashem A. Shihab,
2017,
Scientific Reports.
Nuno A. Fonseca,
Gary D Bader,
Benjamin J. Raphael,
2020,
Nature Communications.
Paul Flicek,
David Richardson,
Laura Clarke,
2017,
GigaScience.
P. Flicek,
R. Lang,
Joerg Mages,
2007,
BMC Genomics.
Paul Flicek,
G. Ritchie,
P. Flicek,
2014,
Genome Medicine.
Ryan L. Collins,
Mark J. P. Chaisson,
R. Handsaker,
2020,
BMC Genomics.
Mark Gerstein,
Jane Loveland,
Dent Earl,
2018,
Nature Genetics.
William J. Astle,
Jonathan M. Cairns,
Benjamin B. Sun,
2017,
Nature Communications.
P. Flicek,
D. Zerbino,
P. Flicek,
2015,
Genome Biology.
Ryan L. Collins,
Mark J. P. Chaisson,
R. Handsaker,
2019,
Nature Communications.
Jeremy D. DeBarry,
Gloria I. Giraldo-Calderón,
Mikkel B. Christensen,
2021,
Nucleic Acids Res..
Anton I. Petrov,
E. Birney,
A. Bateman,
2021,
Nucleic Acids Res..
Lauren A. Fromont,
R. Guigó,
H. Parkinson,
2021,
Nucleic Acids Res..
Thomas M. Keane,
S. Hunt,
H. Parkinson,
2021,
Nucleic Acids Res..
David Haussler,
Angela Page,
Mikael Linden,
2019,
Nature Biotechnology.
Jonathan M. Mudge,
Daniel N. Murphy,
Kelly M. McGarvey,
2022,
Nature.
James E. Allen,
Andrew D. Yates,
Mikkel B. Christensen,
2021,
Nucleic Acids Res..
Son K. Pham,
Thomas M. Keane,
Ian T. Fiddes,
2018,
Nature Genetics.
Warren A. Cheung,
K. Downes,
Avik Datta,
2017,
Genome Biology.
Paul Flicek,
Nicole Soranzo,
Simon Heath,
2016,
Nature Communications.
D. Odom,
J. Marioni,
A. Brazma,
2015,
PloS one.
Xiaoqian Jiang,
Lucila Ohno-Machado,
Jean-Pierre Hubaux,
2017,
J. Am. Medical Informatics Assoc..
Mark Gerstein,
Jane Loveland,
Dent Earl,
2018,
bioRxiv.
D. Odom,
J. Marioni,
P. Flicek,
2018,
Genome Biology.
P. Flicek,
B. Ballester,
A. Werner,
2009,
Nucleic acids research.
A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain
Stephen R. Williams,
Weill Cornell Medicine,
Hagen U. Tilgner,
2021,
Nature Communications.
P. Flicek,
S. Mikalsen,
J. A. Jacobsen,
2019,
Scientific Reports.
E. Nielsen,
P. Flicek,
T. Als,
2022,
Fisheries research.
Xintao Wei,
Christopher B. Burge,
Jason Liu,
2020,
Nature.
Paul Flicek,
Alvis Brazma,
Klara Stefflova,
2012,
Genome research.
Warren A. Cheung,
K. Downes,
Avik Datta,
2017,
Genome Biology.
Anirvan M. Sengupta,
K. Rohr,
R. Eils,
2015,
BMC Genomics.
Robert L. Grossman,
Oliver Hofmann,
Roland Eils,
2020,
Nature Biotechnology.
Paul Flicek,
Fiona Cunningham,
William Spooner,
2018,
Nature Communications.
Paul Flicek,
Magali Ruffier,
Laura Clarke,
2019,
Wellcome open research.
Bret A. Moore,
F. Mammano,
C. Murphy,
2019,
Scientific Reports.
Jonathan M. Mudge,
J. Harrow,
A. Frankish,
2019,
npj Genomic Medicine.
Thomas M. Keane,
Daniel L. Koller,
R. Gibbs,
2013,
Nature Genetics.
Irina M. Armean,
A. Frankish,
F. Cunningham,
2021,
Molecular genetics & genomic medicine.
Paul Flicek,
G. Ritchie,
P. Flicek,
2015
.
P. Flicek,
R. Lang,
Joerg Mages,
2007,
BMC genomics.
P. Taberlet,
F. Pompanon,
P. Flicek,
2015,
Front. Genet..
P. Flicek,
S. Fairley,
E. Lowy,
2021,
Wellcome Open Research.
Identification of genes required for eye development by high-throughput screening of mouse knockouts
Steve D. M. Brown,
Jacqueline K. White,
Bret A. Moore,
2018,
Communications Biology.
P. Taberlet,
F. Pompanon,
P. Flicek,
2021,
bioRxiv.
Paul Flicek,
Dina Halai,
Nadège Presneau,
2012,
The Journal of pathology.
Michael D. Wilson,
Petra C. Schwalie,
D. Odom,
2012,
Cell.
R. Guigó,
D. Torrents,
S. Heath,
2018,
Nature Medicine.
Nicola J. Rinaldi,
Ian C. McDowell,
Christopher D. Brown,
2018,
Nature Communications.
S. Heath,
P. Flicek,
E. Novellino,
2018,
Oncotarget.
Peter W. Harrison,
G. Cochrane,
D. Zerbino,
2021,
Frontiers in Genetics.
Damian Smedley,
Paul Flicek,
Steve D. M. Brown,
2018,
Conservation Genetics.
Paul Flicek,
Magali Ruffier,
Laura Clarke,
2019,
Wellcome open research.
Nuno A. Fonseca,
Gary D Bader,
Benjamin J. Raphael,
2017,
bioRxiv.
P. Flicek,
S. Dyer,
B. Contreras-Moreira,
2023,
bioRxiv.
Nuno A. Fonseca,
Gary D Bader,
Benjamin J. Raphael,
2023,
Nature.
Alan C. Evans,
J. D. Spalding,
A. Philippakis,
2018,
European Journal of Human Genetics.
Irene Papatheodorou,
Lincoln D Stein,
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