J. Kawai

发表

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

William Stafford Noble, Nancy R. Zhang, Stephen C. J. Parker, 2007, Nature.

The Transcriptional Landscape of the Mammalian Genome

S. Salzberg, C. Bult, S. Batalov, 2005, Science.

Initial sequencing and comparative analysis of the mouse genome.

Colin N. Dewey, Simon C. Potter, James A. Cuff, 2002 .

Exploration of novel motifs derived from mouse cDNA sequences.

Y. Matsuo, H. Matsuda, J. Kawai, 2002, Genome research.

Hidden layers of human small RNAs

A. Sandelin, C. Kai, J. Kawai, 2008, BMC Genomics.

An atlas of active enhancers across human cell types and tissues

T. Meehan, C. Mungall, A. Sandelin, 2014, Nature.

Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome

Joseph M. Dale, Nancy F. Hansen, Ronald W. Davis, 2003, Science.

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

E. Birney, E. Lander, C. Bult, 2002, Nature.

Functional annotation of a full-length mouse cDNA collection

C. Bult, S. Batalov, Y. Matsuo, 2001, Nature.

A genome-wide and nonredundant mouse transcription factor database.

J. Kawai, Y. Hayashizaki, Harukazu Suzuki, 2004, Biochemical and biophysical research communications.

Genome-wide analysis of mammalian promoter architecture and evolution

Martin S. Taylor, Sin Lam Tan, V. Bajic, 2006, Nature Genetics.

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

Ariel S. Schwartz, S. Teichmann, V. Bajic, 2010, Cell.

A Simple Physical Model Predicts Small Exon Length Variations

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, PLoS genetics.

G alpha14 is a candidate mediator of sweet/umami signal transduction in the posterior region of the mouse tongue.

J. Kawai, Piero Carninci, Y. Hayashizaki, 2008, Biochemical and biophysical research communications.

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

Thomas J. Ha, Kelly J. Morris, Louise N. Winteringham, 2015, Science.

Antisense Transcription in the Mammalian Transcriptome

S. Batalov, A. Sandelin, J. Kawai, 2005, Science.

Complex Loci in Human and Mouse Genomes

Sin Lam Tan, S. Batalov, V. Bajic, 2006, PLoS genetics.

Tiny RNAs associated with transcription start sites in animals

J. Kawai, J. Mattick, Piero Carninci, 2009, Nature Genetics.

Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia.

M. Fagiolini, T. Hensch, W. Pavan, 2003, Genome research.

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

J. Kawai, Piero Carninci, Y. Hayashizaki, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Discrimination of Non-Protein-Coding Transcripts from Protein-Coding mRNA

C. Bult, G. Pesole, John Quackenbush, 2006, RNA biology.

System-wide analysis of the transcriptional network of human myelomonocytic leukemia cells predicts attractor structure and phorbol-ester-induced differentiation and dedifferentiation transitions

J. Kawai, Harukazu Suzuki, H. Ishii, 2015, Scientific Reports.

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

Martin S. Taylor, Denis C. Bauer, Andrew M. Waterhouse, 2009, Nature Genetics.

Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray

K. Akiyama, T. Sakurai, J. Kawai, 2002 .

The ORFeome Collaboration: a genome-scale human ORF-clone resource

M. Diekhans, T. Moore, M. Vidal, 2016, Nature Methods.

Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High-Throughput Sequencing Approach

J. Kawai, Y. Hayashizaki, N. Maeda, 2009, PloS one.

The regulated retrotransposon transcriptome of mammalian cells

J. Kawai, Piero Carninci, Y. Hayashizaki, 2009, Nature Genetics.

Functional Annotation of a Full-Length Arabidopsis cDNA Collection

K. Akiyama, T. Sakurai, J. Kawai, 2002, Science.

Mice and Men: Their Promoter Properties

Sin Lam Tan, V. Bajic, C. Kai, 2006, PLoS genetics.

Transcript Annotation in FANTOM3: Mouse Gene Catalog Based on Physical cDNAs

C. Bult, S. Batalov, D. Hill, 2006, PLoS genetics.

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data

Piotr J. Balwierz, E. van Nimwegen, J. Kawai, 2009, Genome Biology.

Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters

A. Sandelin, C. Kai, J. Kawai, 2006, Genome Biology.

Genome-wide analysis of mammalian promoter architecture and evolution based upon human and mouse CAGE data, Supplementary Data

Martin S. Taylor, Nakamura, V. Bajic, 2006 .

Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray.

K. Akiyama, T. Sakurai, J. Kawai, 2002, The Plant journal : for cell and molecular biology.

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries.

J. Kawai, J. Mattick, Piero Carninci, 2010, Genome research.

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

Ariel S. Schwartz, S. Teichmann, E. van Nimwegen, 2010, Cell.

Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray

K. Akiyama, T. Sakurai, J. Kawai, 2002, Functional & Integrative Genomics.

Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice

J. Kawai, Piero Carninci, Y. Hayashizaki, 2003, Science.

TeraFly: real-time three-dimensional visualization and annotation of terabytes of multidimensional volumetric images

Yanhui Hu, Lukas Wagner, David E Hill, 2017 .

Insights into social insects from the genome of the honeybee Apis mellifera

Ying Wang, Michal Linial, Andrew G. Clark, 2006, Nature.

Chromosomal-scale de novo genome assemblies of Cynomolgus Macaque and Common Marmoset

Y. Sakakibara, J. Kawai, H. Kawaji, 2020, bioRxiv.

Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis

Y. Sakakibara, A. Iriki, H. Okano, 2015, Scientific Reports.

Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas

J. Kawai, Piero Carninci, Y. Hayashizaki, 2004, Nature Methods.

Heterotachy in Mammalian Promoter Evolution

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, PLoS genetics.

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan

Carsten O. Daub, Philipp Kapranov, Thomas R. Gingeras, 2010, Nature Methods.

Gene Organization in Rice Revealed by Full-Length cDNA Mapping and Gene Expression Analysis through Microarray

Shoshi Kikuchi, Yoshiaki Nagamura, Mayu Yamamoto, 2007, PloS one.

A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

J. Kawai, Y. Hayashizaki, M. Tagami, 2010, BMC Genomics.

Absolute expression values for mouse transcripts: re‐annotation of the READ expression database by the use of CAGE and EST sequence tags

Kazuro Shimokawa, Jun Kawai, Piero Carninci, 2004, FEBS letters.

S. Seno, Y. Takenaka, H. Matsuda, 2006, PLoS genetics.

A PCR-mediated method for cloning spot DNA on restriction landmark genomic scanning (RLGS) gel.

J. Kawai, H. Suzuki, C. Taga, 1994, DNA research : an international journal for rapid publication of reports on genes and genomes.

Effects of the turn-back primer on intermediate product generation in isothermal DNA amplification.

J. Kawai, Y. Hayashizaki, M. Tagami, 2010, BioTechniques.

Correlation between sequence conservation of the 5' untranslated region and codon usage bias in Mus musculus genes.

M. Tomita, J. Kawai, Piero Carninci, 2001, Gene.

Transcriptome of Homoeolo-gous Genes Deduced from the Full-Length cDNA Clones of Common Wheat , Triticum aes

Naoko, J. Kawai, M. Tagami, 2019 .

FANTOM5 CAGE profiles of human and mouse samples

Jay W. Shin, Thomas J. Ha, Kelly J. Morris, 2017, Scientific Data.

Promoter architecture of mouse olfactory receptor genes.

J. Kawai, Piero Carninci, Y. Hayashizaki, 2012, Genome research.

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE

J. Kawai, Piero Carninci, Y. Hayashizaki, 2010, Nucleic acids research.

George MW, Gene ER. Insights into social insects from the genome of the honeybee Apis mellifera. Nature

Ying Wang, Michal Linial, Peer Bork, 2006 .

Comprehensive Functional Analyses of Expressed Sequence Tags in Common Wheat

J. Kawai, K. Yano, K. Mochida, 2015 .

A computer-based method of selecting clones for a full-length cDNA project: simultaneous collection of negligibly redundant and variant cDNAs.

J. Kawai, Piero Carninci, Y. Hayashizaki, 2002, Genome research.

GENOME SCIENCE OF VERTEBRATE

J. Kawai, Y. Hayashizaki, N. Osato, 2011 .

Direct detection and isolation of restriction landmark genomic scanning (RLGS) spot DNA markers tightly linked to a specific trait by using the RLGS spot-bombing method.

J. Kawai, Y. Okazaki, A. Yoshiki, 1995, Proceedings of the National Academy of Sciences of the United States of America.

RLCS, Restriction Landmark cDNA Scanning

J. Kawai, Harukazu Suzuki, Sachihiko Watanabe, 1997 .

Removal of polyA tails from full-length cDNA libraries for high-efficiency sequencing.

J. Kawai, Piero Carninci, Y. Hayashizaki, 2001, BioTechniques.

Comparison ofDNA Methylation Patterns among MouseCell Lines byRestriction LandmarkGenomicScanning

J. Kawai, Y. Hayashizaki, A. Hara, 1994 .

Diversity of Ca2+-activated K+ channel transcripts in inner ear hair cells.

C. Kai, J. Kawai, Piero Carninci, 2007, Gene.

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

Ariel S. Schwartz, S. Teichmann, E. van Nimwegen, 2010, Cell.

Ion extraction from the surface ablated materials in electric fields using an intense femtosecond laser pulse

J. Kawai, Y. Hayashizaki, Y. Okamura-Oho, 2008 .

Time-of-flight detection of monoatomic ions generated by femtosecond laser ablation from large molecules

J. Kawai, Y. Hayashizaki, R. Oyama, 2008 .

Wavelength-dependent fragmentation and clustering observed after femtosecond laser ablation of solid C60.

J. Kawai, Y. Hayashizaki, T. Kobayashi, 2007, The Journal of chemical physics.

Kinetic energy of ions produced with first-, second-, and multi-shot femtosecond laser ablation on a solid surface

J. Kawai, Y. Hayashizaki, Y. Matsuo, 2007 .

Ionization and fragmentation of solid C60 by femtosecond laser ablation.

J. Kawai, Y. Hayashizaki, T. Kobayashi, 2007, The Journal of chemical physics.

Simultaneous atomization and ionization of large organic molecules using femtosecond laser ablation

J. Kawai, Y. Hayashizaki, K. Midorikawa, 2002 .

Stac, a novel neuron-specific protein with cysteine-rich and SH3 domains.

J. Kawai, Y. Hayashizaki, H. Suzuki, 1996, Biochemical and biophysical research communications.

Substrate dependence of ion motion in femtosecond laser ablation cloud observed by planar laser-induced fluorescence

J. Kawai, Y. Hayashizaki, Y. Okamura-Oho, 2008 .

Restriction landmark cDNA scanning (RLCS): a novel cDNA display system using two-dimensional gel electrophoresis.

G. Kuwajima, J. Kawai, H. Suzuki, 1996, Nucleic acids research.

Protein-protein interactions of the hyperthermophilic archaeon Pyrococcus horikoshii OT3

C. Kai, J. Kawai, Piero Carninci, 2005, Genome Biology.

Transcriptome-based systematic identification of extracellular matrix proteins

J. Kawai, Y. Hayashizaki, S. Fukuda, 2008, Proceedings of the National Academy of Sciences.

Subcellular Localization of Mammalian Type II Membrane Proteins

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, Traffic.

Metagenomic Diagnosis of Bacterial Infections

Jun Kawai, Yoshihide Hayashizaki, Toshihiro Horii, 2008, Emerging infectious diseases.

A promoter-level mammalian expression atlas

Cesare Furlanello, Finn Drabløs, Carsten O. Daub, 2015 .

Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.

Shoshi Kikuchi, Kazuo Murakami, Jun Kawai, 2003, DNA research : an international journal for rapid publication of reports on genes and genomes.

Identiﬁcation and characterization of photomedins: novel olfactomedin-domain-containing proteins with chondroitin sulphate-E-binding activity

J. Kawai, Y. Hayashizaki, S. Fukuda, 2022 .

Comparison of DNA methylation patterns among mouse cell lines by restriction landmark genomic scanning

J. Kawai, Y. Hayashizaki, A. Hara, 1994, Molecular and cellular biology.

High Sensitivity TSS Prediction: Estimates of Locations Where TSS Cannot Occur

Vladimir B. Bajic, Jun Kawai, Piero Carninci, 2010, PloS one.

Mutation of Dock5, a member of the guanine exchange factor Dock180 superfamily, in the rupture of lens cataract mouse.

J. Kawai, Y. Hayashizaki, K. Kinoshita, 2008, Experimental eye research.

Antisense transcripts with rice full-length cDNAs

Shoshi Kikuchi, Kazuo Murakami, Jun Kawai, 2003, Genome Biology.

Sequencing of Isotope-Labeled Small RNA Using Femtosecond Laser Ablation Time-of-Flight Mass Spectrometry

J. Kawai, Y. Hayashizaki, Harukazu Suzuki, 2010 .

Evolutionary turnover of mammalian transcription start sites.

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, Genome research.

Systemic identification of estrogen-regulated genes in breast cancer cells through cap analysis of gene expression mapping.

J. Kawai, Piero Carninci, Y. Hayashizaki, 2014, Biochemical and biophysical research communications.

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Martin S. Taylor, Jay W. Shin, Thomas J. Ha, 2021, Nature Communications.

Alternate transcription of the Toll-like receptor signaling cascade

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, Genome Biology.

Novel biomarkers that assist in accurate discrimination of squamous cell carcinoma from adenocarcinoma of the lung

Kenji Suzuki, J. Kawai, Y. Hayashizaki, 2016, BMC Cancer.

Nonimmunoglobulin target loci of activation-induced cytidine deaminase (AID) share unique features with immunoglobulin genes

T. Kawaguchi, J. Kawai, Y. Hayashizaki, 2012, Proceedings of the National Academy of Sciences.

Non-immunoglobulin AID target loci share unique features with immunoglobulin genes

T. Kawaguchi, J. Kawai, Y. Hayashizaki, 2018 .

The Abundance of Short Proteins in the Mammalian Proteome

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, PLoS genetics.

Automated filtration-based high-throughput plasmid preparation system.

J. Kawai, Piero Carninci, Y. Hayashizaki, 1999, Genome research.

Accessibility to tissue‐specific genes from methylation profiles of mouse brain genomic DNA

J. Kawai, Y. Hayashizaki, H. Suzuki, 1995, Electrophoresis.

Asb4, Ata3, and Dcn are novel imprinted genes identified by high-throughput screening using RIKEN cDNA microarray.

Jun Kawai, Yoshihide Hayashizaki, Tomohiro Kono, 2002, Biochemical and biophysical research communications.

Pseudo–Messenger RNA: Phantoms of the Transcriptome

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, PLoS genetics.

Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays

M B Eisen, P. Brown, V. Iyer, 2001, Proceedings of the National Academy of Sciences of the United States of America.

BMC Bioinformatics BioMed Central Methodology article Large-scale clustering of CAGE tag expression data

Takio Kurita, Martin C. Frith, Kazuro Shimokawa, 2007 .

Mouse Full-Length cDNA Encyclopedia Targeting a Complex Transcriptome: The Construction of the

M. Fagiolini, T. Hensch, W. Pavan, 2006 .

Development of a spot reliability evaluation score for DNA microarrays.

J. Kawai, Y. Hayashizaki, Y. Tateno, 2005, Gene.

Genomics approach to abscisic acid- and gibberellin-responsive genes in rice.

J. Kawai, Piero Carninci, Y. Hayashizaki, 2003, DNA research : an international journal for rapid publication of reports on genes and genomes.

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2009, Genome research.

Clusters of Internally Primed Transcripts Reveal Novel Long Noncoding RNAs

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, PLoS genetics.

Restriction Landmark Genomic and cDNA Scanning

J. Kawai, Y. Hayashizaki, Y. Okazaki, 2006 .

Identification of a novel member of the snail/Gfi-1 repressor family, mlt 1, which is methylated and silenced in liver tumors of SV40 T antigen transgenic mice.

J. Kawai, Y. Hayashizaki, Y. Okazaki, 2001, Cancer research.

Tumors of SV 40 T Antigen Transgenic Mice Which Is Methylated and Silenced in Liver mlt 1 , Family , Repressor Snail / Gfi-1 Identification of a Novel Member of the Updated Version

J. Kawai, Y. Hayashizaki, Y. Okazaki, 2001 .

Comparative analysis of mouse NotI linking clones with mouse and human genomic sequences and transcripts.

V. Chapman, C. Plass, J. Kawai, 1995, DNA research : an international journal for rapid publication of reports on genes and genomes.

Mapping of 19032 mouse cDNAs on mouse chromosomes

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2002, Journal of Structural and Functional Genomics.

Identification and characterization of nCLP2, a novel C1q family protein expressed in the central nervous system.

J. Kawai, Y. Hayashizaki, S. Fukuda, 2010, Journal of biochemistry.

Methylation profiles of genomic DNA of mouse developmental brain detected by restriction landmark genomic scanning (RLGS) method.

J. Kawai, Y. Hayashizaki, S. Hirotsune, 1993, Nucleic acids research.

Discovery of transcriptional regulators and signaling pathways in the developing pituitary gland by bioinformatic and genomic approaches.

D. Ghosh, J. Kawai, Piero Carninci, 2009, Genomics.

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2005, Nucleic Acids Res..

Computational analysis of full-length mouse cDNAs compared with human genome sequences

Jun Kawai, Yoshihide Hayashizaki, Tetsuya Saito, 2001, Mammalian Genome.

Differential Use of Signal Peptides and Membrane Domains Is a Common Occurrence in the Protein Output of Transcriptional Units

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, PLoS genetics.

A genetic linkage map of the mouse using restriction landmark genomic scanning (RLGS).

J. Kawai, Y. Hayashizaki, Y. Okazaki, 1994, Genetics.

Methylation and downregulated expression of mac25/insulin-like growth factor binding protein-7 is associated with liver tumorigenesis in SV40T/t antigen transgenic mice, screened by restriction landmark genomic scanning for methylation (RLGS-M).

J. Kawai, Y. Hayashizaki, Y. Okazaki, 2000, Biochemical and biophysical research communications.

Evaluation of off‐target effects of gapmer antisense oligonucleotides using human cells

J. Kawai, H. Kawaji, M. Naito, 2019, Genes to cells : devoted to molecular & cellular mechanisms.

CXCL4/PF4 is a predictive biomarker of cardiac differentiation potential of human induced pluripotent stem cells

J. Kawai, M. Itoh, H. Kawaji, 2019, Scientific Reports.

Constructing ORFeome resources with removable termination codons.

J. Kawai, Piero Carninci, Y. Hayashizaki, 2006, BioTechniques.

FXYD6, a Na,K-ATPase Regulator, Is Expressed in Type II Taste Cells

J. Kawai, Piero Carninci, Y. Hayashizaki, 2011, Bioscience, biotechnology, and biochemistry.

Dynamic usage of transcription start sites within core promoters

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2006, Genome Biology.

NanoCAGE analysis of the mouse olfactory epithelium identifies the expression of vomeronasal receptors and of proximal LINE elements

J. Kawai, Piero Carninci, Y. Hayashizaki, 2013, Front. Cell. Neurosci..

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns

Masaru Tomita, Jun Kawai, Piero Carninci, 2010, BMC Genomics.

Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes

Liang Yang, Vladimir B. Bajic, Jun Kawai, 2006, BMC Bioinformatics.

A novel feature of microsatellites in plants: a distribution gradient along the direction of transcription

Masaru Tomita, Kenichi Higo, Shoshi Kikuchi, 2003, FEBS letters.

Solution Structure of the SEA Domain from the Murine Homologue of Ovarian Cancer Antigen CA125 (MUC16)*

Y. Matsuo, J. Kawai, Piero Carninci, 2004, Journal of Biological Chemistry.

Increased specificity of reverse transcription priming by trehalose and oligo-blockers allows high-efficiency window separation of mRNA display.

J. Kawai, Piero Carninci, Y. Hayashizaki, 1999, Nucleic acids research.

Splicing bypasses 3' end formation signals to allow complex gene architectures.

C. Kai, J. Kawai, J. Mattick, 2007, Gene.

Transcriptomics resources for functional genomics.

J. Kawai, Piero Carninci, Y. Hayashizaki, 2007, Briefings in functional genomics & proteomics.

Informatic and genomic analysis of melanocyte cDNA libraries as a resource for the study of melanocyte development and function.

Benjamin J. Hsu, T. Wolfsberg, L. Umayam, 2007, Pigment cell research.

Mouse genome encyclopedia and genome network

J. Kawai, Y. Hayashizaki, 2004 .

Identification of unique transcripts from a mouse full-length, subtracted inner ear cDNA library.

J. Kawai, Piero Carninci, Y. Hayashizaki, 2004, Genomics.

Subtraction of cap-trapped full-length cDNA libraries to select rare transcripts.

M. Fagiolini, T. Hensch, J. Kawai, 2003, BioTechniques.

Multiple tissue-specific promoters control expression of the murine tartrate-resistant acid phosphatase gene.

J. Kawai, Piero Carninci, Y. Hayashizaki, 2003, Gene.

LOCATE: a mouse protein subcellular localization database

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2005, Nucleic Acids Res..

Antisense Transcription in the Mammalian Transcriptome RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium

Boris Lenhard, Martin C. Frith, Jun Kawai, 2005 .

Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases

Geoffrey J Faulkner, Jun Kawai, Piero Carninci, 2006, Genome Biology.

Comparative analysis of plant and animal calcium signal transduction element using plant full-length cDNA data.

Shoshi Kikuchi, Kazuo Murakami, Jun Kawai, 2004, Molecular biology and evolution.

Restriction landmark genomic scanning method and its various applications

Jun Kawai, Yoshihide Hayashizaki, Yasushi Okazaki, 1993, Electrophoresis.

The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations.

J. Kawai, Piero Carninci, Y. Hayashizaki, 2014, Blood.

Improved restriction landmark cDNA scanning and its application to global analysis of genes regulated by nerve growth factor in PC12 cells.

J. Kawai, H. Suzuki, T. Yaoi, 1998, Biochimica et biophysica acta.

Correspondence of RLGS-M spot behavior with tissue expression on mouse homologue of DP1/TB2 gene.

J. Kawai, H. Suzuki, A. Hara, 1995, Biochemical and biophysical research communications.

Development of a high-throughput method for the systematic identification of human proteins nuclear translocation potential

J. Kawai, Y. Hayashizaki, Harukazu Suzuki, 2009, BMC Cell Biology.

The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells.

Jun Kawai, Yoshihide Hayashizaki, Yuki Hasegawa, 2010, Molecular immunology.

Novel biomarkers that assist in accurate discrimination of squamous cell carcinoma from adenocarcinoma of the lung

Kenji Suzuki, J. Kawai, Y. Hayashizaki, 2016, BMC Cancer.

Solution structure of a BolA‐like protein from Mus musculus

Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, 2004, Protein science : a publication of the Protein Society.

Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa)

Masaru Tomita, Kenichi Higo, Shoshi Kikuchi, 2005, Bioinform..

involved in tissue-specific transcription in rice (Oryza sativa)

M. Tomita, J. Kawai, Piero Carninci, 2005 .

Arabidopsis encyclopedia using full-length cDNAs and its application

J. Kawai, Piero Carninci, Y. Hayashizaki, 2001 .

Assessment of adaptive evolution between wheat and rice as deduced from full-length common wheat cDNA sequence data and expression patterns

Y. Sakaki, C. Kai, J. Kawai, 2009, BMC Genomics.

Explorer Promoter architecture of mouse olfactory receptor genes

J. Kawai, Piero Carninci, Y. Hayashizaki, 2017 .

Comprehensive sequence analysis of translation termination sites in various eukaryotes.

M. Tomita, J. Kawai, Piero Carninci, 2002, Gene.

Role of nitric oxide synthesized by nitric oxide synthase 2 in liver regeneration

J. Kawai, Y. Hayashizaki, H. Shimada, 2008, Liver international : official journal of the International Association for the Study of the Liver.

Chromosomal-scale de novo genome assemblies of Cynomolgus Macaque and Common Marmoset

Y. Sakakibara, J. Kawai, H. Kawaji, 2021, Scientific Data.

Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis.

Shoshi Kikuchi, Kazuo Murakami, Jun Kawai, 2004, Physiological genomics.

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease

Carsten O. Daub, Vladimir B. Bajic, Tom C. Freeman, 2016, bioRxiv.

Multiple Zinc Finger Motifs with Comparison of Plant and Insect

J. Kawai, Piero Carninci, Y. Hayashizaki, 2001 .

Solution structure of the RWD domain of the mouse GCN2 protein

K. Kinoshita, J. Kawai, Piero Carninci, 2004, Protein science : a publication of the Protein Society.

Mammalian class E Vps proteins, SBP1 and mVps2/CHMP2A, interact with and regulate the function of an AAA-ATPase SKD1/Vps4B

Jun Kawai, Yoshihide Hayashizaki, Hideaki Fujita, 2004, Journal of Cell Science.

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, L. K. Nielsen, Kelly J. Hitchens, 2021 .

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, L. K. Nielsen, Kelly J. Hitchens, 2021 .

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan

T. Gingeras, P. Kapranov, I. Bell, 2010, Nature Methods.

Explorer Induction of microRNAs , mir-155 , mir-222 , mir-424 and mir-503 , promotes monocytic differentiation through combinatorial regulation

M Suzuki, Kaiho, J. Kawai, 2010 .

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, L. K. Nielsen, Kelly J. Hitchens, 2022 .

FANTOM5 CAGE profiles of human and mouse samples.

Jay W. Shin, Thomas J. Ha, Kelly J. Morris, 2017, Scientific data.

A new approach to the distribution and storage of genetic resources

Jun Kawai, Yoshihide Hayashizaki, J. Kawai, 2004, Nature Reviews Genetics.

Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa)

M. Tomita, J. Kawai, Piero Carninci, 2005, Bioinform..

CXCL4/PF4 is a predictive biomarker of cardiac differentiation potential of human induced pluripotent stem cells

J. Kawai, M. Itoh, H. Kawaji, 2019, Scientific Reports.

Large-scale collection and characterization of promoters of human and mouse genes

Alexander E. Kel, Kenta Nakai, Toshihisa Takagi, 2004, Silico Biol..

DNA book.

J. Kawai, Y. Hayashizaki, 2003, Genome research.

Comparison of plume expansion in femtosecond laser ablation on oxidized and non-oxidized Sm surfaces

J. Kawai, Y. Hayashizaki, T. Kobayashi, 2008 .

Comparison between femtosecond and nanosecond laser ablation of solution samples applied on a substrate

J. Kawai, Y. Hayashizaki, R. Oyama, 2007 .

Observation of the matrix effect due to the electron transfer in laser ablation plasma

J. Kawai, Y. Hayashizaki, T. Kobayashi, 2008 .

Dynamics of ablation plasma induced by a femtosecond laser pulse in electric fields

J. Kawai, Y. Hayashizaki, Y. Matsuo, 2009 .

LIF observation of neutral atoms and ions produced by femtosecond laser ablation of Sm on a substrate

J. Kawai, Y. Hayashizaki, Y. Matsuo, 2007 .

Induction of microRNAs, mir-155, mir-222, mir-424 and mir-503, promotes monocytic differentiation through combinatorial regulation

J. Kawai, Y. Hayashizaki, Harukazu Suzuki, 2010, Leukemia.

An atlas of active enhancers across human cell types and tissues

T. Meehan, C. Mungall, A. Sandelin, 2014, Nature.

The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations.

Piotr J. Balwierz, J. Kawai, Piero Carninci, 2014, Blood.

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease

Carsten O. Daub, Vladimir B. Bajic, Tom C. Freeman, 2016, bioRxiv.

Metagenomic Diagnosis of Bacterial Infections

J. Kawai, Y. Hayashizaki, N. Maeda, 2008, Emerging infectious diseases.

Tiny RNAs associated with transcription start sites in animals

J. Kawai, J. Mattick, Piero Carninci, 2009, Nature Genetics.

Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa)

M. Tomita, J. Kawai, Piero Carninci, 2005, Bioinform..

Induction of microRNAs, mir-155, mir-222, mir-424 and mir-503, promotes monocytic differentiation through combinatorial regulation

J. Kawai, Y. Hayashizaki, Harukazu Suzuki, 2010, Leukemia.

Discovery of transcriptional regulators and signaling pathways in the developing pituitary gland by bioinformatic and genomic approaches.

D. Ghosh, J. Kawai, Piero Carninci, 2009, Genomics.

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

Martin S. Taylor, Denis C. Bauer, Ariel S. Schwartz, 2009, Nature Genetics.

promoters using DeepCAGE Genome-wide detection and analysis of hippocampus core

Man-Hung Eric Tang, A. Krogh, A. Sandelin, 2009 .

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

A. Sandelin, J. Kawai, Y. Hayashizaki, 2009, Genome research.

Hydrogenation of carbon fragments after femtosecond laser ablation of solid C60

J. Kawai, Y. Hayashizaki, Y. Matsuo, 2009 .

Temporal pulsewidth and the wavelength dependences of the product ions obtained by laser ablation of solid C60

J. Kawai, Y. Hayashizaki, T. Kobayashi, 2008 .

A promoter-level mammalian expression atlas

Martin S. Taylor, Jay W. Shin, Thomas J. Ha, 2014, Nature.

Edinburgh Research Explorer Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes

Sin Lam Tan, C. Kai, J. Kawai, 2022 .

Single-Cell RNA-Seq Reveals LRRC75A-Expressing Cell Population Involved in VEGF Secretion of Multipotent Mesenchymal Stromal/Stem Cells Under Ischemia

Jay W. Shin, J. Kawai, T. Kasukawa, 2023, Stem cells translational medicine.