V. Vega

发表

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

William Stafford Noble, Nancy R. Zhang, Stephen C. J. Parker, 2007, Nature.

Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells

N. D. Clarke, Hock Chuan Yeo, X. Chen, 2008, Cell.

A Global Map of p53 Transcription-Factor Binding Sites in the Human Genome

Z. Weng, Yutao Fu, E. Liu, 2006, Cell.

Comment on " 'Stemness': Transcriptional Profiling of Embryonic and Adult Stem Cells" and "A Stem Cell Molecular Signature" (I)

Philip M. Long, H. Otu, T. Libermann, 2003, Science.

An Oestrogen Receptor α-bound Human Chromatin Interactome

E. Liu, W. Sung, H. Ooi, 2009, Nature.

The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

X. Chen, J. George, P. Robson, 2006, Nature Genetics.

An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival.

P. Hall, Y. Pawitan, J. Bergh, 2005, Proceedings of the National Academy of Sciences of the United States of America.

ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing

W. Sung, H. Ooi, Chia-Lin Wei, 2010, Genome Biology.

Genome-wide statistical analysis of multiple transcription factor binding sites obtained by chip-seq technologies

Yuriy L. Orlov, Vinsensius B. Vega, N. D. Clarke, 2009, CompBio '09.

A human in vitro model system for investigating genome-wide host responses to SARS coronavirus infection

Martin L Hibberd, Edison T Liu, E. Liu, 2004, BMC infectious diseases.

An expression signature for p 53 status in human breast cancer predicts mutation status , transcriptional effects , and patient survival

P. Hall, Y. Pawitan, J. George, 2005 .

Tracking the evolution of the SARS coronavirus using high-throughput, high-density resequencing arrays.

Christopher W. Wong, D. Cutler, E. Liu, 2004, Genome research.

Evolution of the mammalian transcription factor binding repertoire via transposable elements.

E. Liu, K. Srinivasan, Chia-Lin Wei, 2008, Genome research.

Whole-Genome Cartography of Estrogen Receptor α Binding Sites

F. Stossi, B. Katzenellenbogen, Tao Zhang, 2007, PLoS genetics.

Conservation of gene expression signatures between zebrafish and human liver tumors and tumor progression

Huiqing Zhan, Zhiyuan Gong, Yan Tong, 2006, Nature Biotechnology.

Discovery of estrogen receptor α target genes and response elements in breast tumor cells

Allen Chong, Vladimir B Bajic, Suisheng Tang, 2004, Genome Biology.

Laboratory-acquired severe acute respiratory syndrome.

Christopher W. Wong, Y. Ruan, V. Vega, 2004, The New England journal of medicine.

cis-regulatory region analysis using BEARR.

V. Vega, 2006, Methods in molecular biology.

De-Novo Identification of PPARγ/RXR Binding Sites and Direct Targets during Adipogenesis

E. Liu, K. Chiu, Chia-Lin Wei, 2009, PloS one.

COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY VOLUME LXXIII

R. Young, R. Tjian, G. Daley, 2009 .

CORRECTIONS

Y. Pawitan, E. Liu, V. Vega, 1994, The Lancet.

Identification of discriminators of hepatoma by gene expression profiling using a minimal dataset approach

Philip M. Long, Paul B S Lai, Edison T Liu, 2004, Hepatology.

Genome-wide mapping of RELA(p65) binding identifies E2F1 as a transcriptional activator recruited by NF-kappaB upon TLR4 activation.

Joshy George, Wing-Kin Sung, Yijun Ruan, 2007, Molecular cell.

Reprogramming of fibroblasts into induced pluripotent stem cells with orphan nuclear receptor Esrrb

Thomas Lufkin, Vinsensius B. Vega, Huck-Hui Ng, 2009, Nature Cell Biology.

Transcriptional regulatory networks in embryonic stem cells.

V. Vega, H. Ng, X. Chen, 2008, Cold Spring Harbor symposia on quantitative biology.

Gene expression preferentially regulated by tamoxifen in breast cancer cells and correlations with clinical outcome.

Chin-Yo Lin, Jonas Bergh, Barry Komm, 2006, Cancer research.

BEARR: Batch Extraction and Analysis of cis-Regulatory Regions

Lance D. Miller, Edison T. Liu, Chin-Yo Lin, 2004, Nucleic Acids Res..

Comparative full-length genome sequence analysis of 14 SARS coronavirus isolates and common mutations associated with putative origins of infection

Philip M. Long, Yijun Ruan, Edison T Liu, 2003, The Lancet.

Inherent Signals in Sequencing-Based Chromatin-ImmunoPrecipitation Control Libraries

Wing-Kin Sung, Edwin Cheung, Nallasivam Palanisamy, 2009, PloS one.

Mutational dynamics of the SARS coronavirus in cell culture and human populations isolated in 2003

Tao Zhang, Philip M. Long, Jianjun Liu, 2004, BMC infectious diseases.

Inhibitory effects of estrogen receptor beta on specific hormone-responsive gene expression and association with disease outcome in primary breast cancer

J. Bergh, E. Liu, V. Vega, 2007, Breast Cancer Research.

Multiplatform genome-wide identification and modeling of functional human estrogen receptor binding sites

Guillaume Bourque, Chin-Yo Lin, Edison T Liu, 2006, Genome Biology.

Zebrafish Whole-Adult-Organism Chemogenomics for Large-Scale Predictive and Discovery Chemical Biology

R. Krishna Murthy Karuturi, Edison T. Liu, Vinsensius B. Vega, 2008, PLoS genetics.

Genome-wide expression profiling; a panel of mouse tissues discloses novel biological functions of liver X receptors in adrenals.

E. Liu, V. Vega, J. Gustafsson, 2004, Journal of molecular endocrinology.

A Streamlined and Generalized Analysis of Chromatin ImmunoPrecipitation Paired-End diTag Data

Wing-Kin Sung, Yijun Ruan, Vinsensius B. Vega, 2008, ICCS.

Heterogeneity detector: finding heterogeneous positions in Phred/Phrap assemblies

W. H. Lee, V. B. Vega, V. Vega, 2004, Bioinform..

Comparative full-length genome sequence analysis of 14 SARS coronavirus isolates and common mutations associated with putative origins of infection

Philip M. Long, E. Liu, Chia-Lin Wei, 2003, The Lancet.

Friendly neighbors method for unsupervised determination of gene significance in time-course microarray data

Karuturi R. Krishna Murthy, Vinsensius B. Vega, V. Vega, 2004, Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering.