R. Blakesley

发表

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

William Stafford Noble, Nancy R. Zhang, Stephen C. J. Parker, 2007, Nature.

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.

Colin N. Dewey, Richard A. Moore, James B. Brown, 2007, Genome research.

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

Lisa M. D'Souza, Colin N. Dewey, Martin S. Taylor, 2004, Nature.

The ENCODE (ENCyclopedia Of DNA Elements) Project

Paul T. Groth, William Stafford Noble, Colin N. Dewey, 2004, Science.

Comparative analyses of multi-species sequences from targeted genomic regions

Nancy F. Hansen, J. W. Thomas, D. Haussler, 2003, Nature.

Topographical and Temporal Diversity of the Human Skin Microbiome

C. Deming, S. Conlan, H. Kong, 2009, Science.

An intermediate grade of finished genomic sequence suitable for comparative analyses.

Bradley I. Coleman, J. Mullikin, N. Hansen, 2004, Genome research.

Research in Genomic Medicine the Clinseq Project: Piloting Large-scale Genome Sequencing for Material Supplemental

Alexander F. Wilson, A. F. Wilson, J. Mullikin, 2009 .

Systematic sequencing of cDNA clones using the transposon Tn5.

E. Green, M. Marra, G. Bouffard, 2002, Nucleic acids research.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

G. Rubin, S. Altschul, K. McKernan, 2002, Proceedings of the National Academy of Sciences of the United States of America.

The completion of the Mammalian Gene Collection (MGC)

Richard A. Moore, Lillian D. Riddick, Charles L. G. Comstock, 2009 .

Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes

Morgan Park, R. Blakesley, M. Martindale, 2012, BMC Biology.

Gene-Based Sequencing Identifies Lipid-Influencing Variants with Ethnicity-Specific Effects in African Americans

Nancy F. Hansen, C. Rotimi, A. Adeyemo, 2014, PLoS genetics.

Maturation and Diversity of the VRC01-Antibody Lineage over 15 Years of Chronic HIV-1 Infection

Young Do Kwon, Tongqing Zhou, Baoshan Zhang, 2015, Cell.

A diversity profile of the human skin microbiota.

Gabriel Renaud, T. Wolfsberg, H. Kong, 2008, Genome research.

Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling.

Sarah Barber, Lukas Wagner, Malachi Griffith, 2006, Genome research.

Generation and comparative analysis of approximately 3.3 Mb of mouse genomic sequence orthologous to the region of human chromosome 7q11.23 implicated in Williams syndrome.

Jeffrey W Touchman, Webb Miller, Scott Schwartz, 2002, Genome research.

Antibiotic induced electrophoretic mobility shifts of DNA restriction fragments.

R. Blakesley, R. Wells, J. Van De Sande, 1979, Nucleic acids research.

Linear amplification DNA sequencing directly from single phage plaques and bacterial colonies.

R. Blakesley, D. Berg, B. R. Krishnan, 1991, Nucleic acids research.

Purification of nucleic acids by RPC-5 ANALOG chromatography: peristaltic and gravity-flow applications.

R. Blakesley, R. Wells, J. Thompson, 1983, Methods in enzymology.

pDUAL: a transposon-based cosmid cloning vector for generating nested deletions and DNA sequencing templates in vivo.

R. Blakesley, D. Berg, C. M. Berg, 1993, Proceedings of the National Academy of Sciences of the United States of America.

Cycle sequencing.

R. Blakesley, 1993, Methods in molecular biology.

A new staining technique for proteins in polyacrylamide gels using coomassie brilliant blue G250.

R. Blakesley, J. Boezi, 1977, Analytical biochemistry.

Marek's Disease Herpesvirus-Induced DNA Polymerase

R. Blakesley, M. Koenig, H. Towle, 1974, Journal of virology.

Guide to the use of type II restriction endonucleases.

R. Blakesley, R. Fuchs, 1983, Methods in enzymology.

Personalized genomic medicine: lessons from the exome.

Nancy F. Hansen, J. Mullikin, N. Hansen, 2011, Molecular genetics and metabolism.

Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae

Jonas Korlach, David K. Henderson, James C. Mullikin, 2014, Science Translational Medicine.

Separation of different physical forms of plasmid DNA using a combination of low electric field strength and flow in porous media: Effect of different field gradients and porosity of the media

R. Blakesley, K. Cole, C. M. Tellez, 2000, Electrophoresis.

The role of DNA structure in genetic regulation.

P. V. von Hippel, K. Jensen, R. Blakesley, 1977, CRC critical reviews in biochemistry.

RSITE: a computer program to predict the recognition sequence of a restriction enzyme

C. M. Tolstoshev, R. W. Blakesley, R. Blakesley, 1982, Nucleic Acids Res..

Pericentromeric duplications in the laboratory mouse.

E. Green, G. Bouffard, J. Idol, 2003, Genome research.

Generation and Comparative Analysis of ∼3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome

Webb Miller, Jeffrey W. Touchman, Scott Schwartz, 2002 .

Effort required to finish shotgun-generated genome sequences differs significantly among vertebrates

Nancy F. Hansen, Eric D Green, Nancy F Hansen, 2010, BMC Genomics.

TTC21B contributes both causal and modifying alleles across the ciliopathy spectrum

Colin A. Johnson, Nancy F. Hansen, R. Gibbs, 2011, Nature Genetics.

Duplex regions in "single-stranded" phiX174 DNA are cleaved by a restriction endonuclease from Haemophilus aegyptius.

R. Blakesley, J. Dodgson, I. Nes, 1977, Journal of Biological Chemistry.

Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites.

Alice Young, Eric D Green, James C Mullikin, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates

Michael Otto, S. Conlan, H. Kong, 2012, Genome Biology.

Whole-Exome Sequencing Identifies Homozygous AFG3L2 Mutations in a Spastic Ataxia-Neuropathy Syndrome Linked to Mitochondrial m-AAA Proteases

Anthony Sandler, Nancy F. Hansen, Jamie K. Teer, 2011, PLoS genetics.

Correction: Whole-Exome Sequencing Identifies Homozygous AFG3L2 Mutations in a Spastic Ataxia-Neuropathy Syndrome Linked to Mitochondrial m-AAA Proteases

J. Mullikin, E. Rugarli, N. Hansen, 2013, PLoS Genetics.

Genetic organization of the KpnI restriction--modification system.

R. Blakesley, G. Gerard, D. K. Chatterjee, 1991, Nucleic acids research.

A kinetic and structural characterization of adenosine-5'-triphosphate: ribonucleic acid adenylyltransferase from Pseudomonas putida.

R. Blakesley, J. Boezi, 1975, Biochimica et biophysica acta.

‘Single-stranded’ DNA from φX174 and M13 is cleaved by certain restriction endonucleases

R. Blakesley, R. Wells, 1975, Nature.

Analysis of immunoglobulin transcripts and hypermutation following SHIVAD8 infection and protein-plus-adjuvant immunization

T. Kepler, J. Mullikin, J. Mascola, 2015, Nature Communications.

Sequence-specific endonuclease Bam HI. Effect of hydrophobic reagents on sequence recognition and catalysis.

J. G. Chirikjian, R. Blakesley, J. George, 1980, The Journal of biological chemistry.

Preparation and properties of immobilized sequence specific endonucleases.

J. G. Chirikjian, R. Blakesley, L. Smith, 1980, Methods in enzymology.

Preparation and properties of insolubilized restriction endonucleases.

J. G. Chirikjian, R. Blakesley, L. Smith, 1978, Nucleic Acids Research.

The completion of the Mammalian Gene Collection (MGC).

Ryan D. Morin, Richard A. Moore, Lillian D. Riddick, 2009, Genome research.

Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants

Stephen C. J. Parker, A. Visel, F. Collins, 2013, Proceedings of the National Academy of Sciences.

Mining the antibodyome for HIV-1–neutralizing antibodies with next-generation sequencing and phylogenetic pairing of heavy/light chains

Baoshan Zhang, Peter D. Kwong, John R. Mascola, 2013, Proceedings of the National Academy of Sciences.

The ClinSeq Project: piloting large-scale genome sequencing for research in genomic medicine.

Nancy F. Hansen, Alexander F. Wilson, J. Mullikin, 2009, Genome research.