Valer Gotea

发表

Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers.

A. Visel, Valer Gotea, John M Westlund, 2010, Genome research.

Evolution of genes and genomes on the Drosophila phylogeny

Melanie A. Huntley, Sonja J. Prohaska, Albert J. Vilella, 2007, Nature.

Pan-cancer stratification of solid human epithelial tumors and cancer cell lines reveals commonalities and tissue-specific features of the CpG island methylator phenotype

Valer Gotea, Francisco Sánchez-Vega, Laura Elnitski, 2015, Epigenetics & Chromatin.

Ascertaining regions affected by GC-biased gene conversion through weak-to-strong mutational hotspots.

L. Elnitski, Valer Gotea, 2014, Genomics.

The functional relevance of somatic synonymous mutations in melanoma and other cancers

Valer Gotea, Laura Elnitski, Yardena Samuels, 2015, Pigment cell & melanoma research.

Transposable elements as a significant source of transcription regulating signals.

Valer Gotea, Wojciech Makałowski, Valer Gotea, 2006, Gene.

Assessing predictions of the impact of variants on splicing in CAGI5

Stephen M. Mount, R. Casadio, J. Gagneur, 2019, Human Mutation.

Characterization and clustering of kinase isoform expression in metastatic melanoma.

David O. Holland, L. Elnitski, Valer Gotea, 2022, PLoS computational biology.

Do transposable elements really contribute to proteomes?

Valer Gotea, W. Makałowski, 2006, Trends in genetics : TIG.

Genome-wide detection of a TFIID localization element from an initial human disease mutation

Jens Lichtenberg, Valer Gotea, Lonnie Welch, 2010, Nucleic acids research.

Whole-genome sequencing identifies a recurrent functional synonymous mutation in melanoma

Stephen C. J. Parker, Valer Gotea, Hannah Carter, 2013, Proceedings of the National Academy of Sciences.

Bidirectional Promoters as Important Drivers for the Emergence of Species-Specific Transcripts

Valer Gotea, Laura Elnitski, L. Elnitski, 2013, PloS one.

Tissue-Specific and Ubiquitous Expression Patterns from Alternative Promoters of Human Genes

Valer Gotea, Edwin Jacox, Ivan Ovcharenko, 2010, PloS one.

Transposable Elements: Classification, Identification, and Their Use As a Tool For Comparative Genomics.

Valer Gotea, Wojciech Makałowski, Amit Pande, 2019, Methods in molecular biology.

Transposable elements and their identification.

Valer Gotea, Wojciech Makałowski, Amit Pande, 2012, Methods in molecular biology.

Spliceosomal small nuclear RNA genes in 11 insect genomes.

Valer Gotea, Stephen M. Mount, Wojciech Makalowski, 2006, RNA.

Significant associations between driver gene mutations and DNA methylation alterations across many cancer types

Valer Gotea, Laura Elnitski, Yun-Ching Chen, 2017, bioRxiv.

Recurrent patterns of DNA methylation in the ZNF154, CASP8, and VHL promoters across a wide spectrum of human solid epithelial tumors and cancer cell lines

L. Elnitski, Valer Gotea, D. Bell, 2013, Epigenetics.

Differential gene expression identifies a transcriptional regulatory network involving ER-alpha and PITX1 in invasive epithelial ovarian cancer

L. Elnitski, Valer Gotea, F. Drews, 2021, BMC Cancer.

CpG island methylator phenotype in adenocarcinomas from the digestive tract: Methods, conclusions, and controversies

L. Elnitski, Valer Gotea, F. Sánchez-Vega, 2017, World journal of gastrointestinal oncology.

Pan-cancer stratification of solid human epithelial tumors and cancer cell lines reveals commonalities and tissue-specific features of the CpG island methylator phenotype

L. Elnitski, Valer Gotea, F. Sánchez-Vega, 2015, Epigenetics & Chromatin.

A Case of IL-7R Deficiency Caused by a Novel Synonymous Mutation and Implications for Mutation Screening in SCID Diagnosis

L. Elnitski, Valer Gotea, Ghadi Rai, 2016, Front. Immunol..

Functional analysis of synonymous substitutions predicted to affect splicing of the CFTR gene.

Alexandra J. Scott, L. Elnitski, Valer Gotea, 2012, Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society.

A novel role for nucleolin in splice site selection

L. Elnitski, Valer Gotea, R. Sperling, 2020, bioRxiv.

Characterization and clustering of kinase isoform expression in metastatic melanoma

David O. Holland, L. Elnitski, Valer Gotea, 2021, bioRxiv.

DiRE: identifying distant regulatory elements of co-expressed genes

Valer Gotea, Ivan Ovcharenko, Valer Gotea, 2008, Nucleic Acids Res..

Human Mutation

L. Elnitski, Valer Gotea, Gennady Margolin, 2019 .

SoMAS: Finding somatic mutations associated with alternative splicing in human cancers

David O. Holland, L. Elnitski, Valer Gotea, 2023, bioRxiv.

Mastering seeds for genomic size nucleotide BLAST searches.

Valer Gotea, Vamsi Veeramachaneni, Wojciech Makałowski, 2003, Nucleic acids research.

CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods

Silvio C. E. Tosatto, Julius O. B. Jacobsen, Nicholas A. Sinnott-Armstrong, 2024, Genome biology.

CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods

Nicholas A. Sinnott-Armstrong, Jonathan M. Mudge, Hui Ting Grace Yeo, 2022, Genome biology.

DiRE: identifying distant regulatory elements of co-expressed genes

Valer Gotea, I. Ovcharenko, 2008, Nucleic Acids Res..