Thomas Zeng

发表

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

Allen D. Delaney, Steven J. M. Jones, O. Griffith, 2007, Nature Methods.

Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding.

Anthony P. Fejes, M. Krzywinski, M. Snyder, 2008, Genome research.

Feature-based classifiers for somatic mutation detection in tumour–normal paired sequencing data

Gholamreza Haffari, Anne Condon, Sohrab P. Shah, 2011, Bioinform..

Mutation of FOXL2 in granulosa-cell tumors of the ovary.

Ryan D. Morin, A. deFazio, D. Bowtell, 2009, The New England journal of medicine.

Frequent mutation of histone modifying genes in non-Hodgkin lymphoma

Steven J. M. Jones, Shaun D. Jackman, Ryan D. Morin, 2011, Nature.

ARID1A mutations in endometriosis-associated ovarian carcinomas.

Richard A. Moore, S. Fereday, D. Bowtell, 2010, The New England journal of medicine.

Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells.

Ryan D. Morin, Allen D. Delaney, M. Marra, 2008, Genome research.

Comprehensive molecular characterization of human colon and rectal cancer

Steven J. M. Jones, Joshua M. Stuart, Brian D. O’Connor, 2012, Nature.

Comprehensive genomic characterization of squamous cell lung cancers

Steven J. M. Jones, Joshua M. Stuart, Brian D. O’Connor, 2012, Nature.

BMC Genomics BioMed Central Methodology article

Steven J. M. Jones, Malachi Griffith, Thomas Zeng, 2006 .

Next-generation tag sequencing for cancer gene expression profiling.

Ryan D. Morin, Allen D. Delaney, M. Marra, 2009, Genome research.

Alternative expression analysis by RNA sequencing

Steven J. M. Jones, Ryan D. Morin, Trevor J Pugh, 2010, Nature Methods.

The clonal and mutational evolution spectrum of primary triple-negative breast cancers

Irmtraud M. Meyer, A. Bashashati, I. Birol, 2012, Nature.

Mutation Discovery in Regions of Segmental Cancer Genome Amplifications with CoNAn-SNV: A Mixture Model for Next Generation Sequencing of Tumors

Allen D. Delaney, M. Marra, M. Hirst, 2012, PloS one.

Complete genomic landscape of a recurring sporadic parathyroid carcinoma

Steven J. M. Jones, Inanc Birol, Thomas Zeng, 2013, The Journal of pathology.

Comprehensive molecular portraits of human breast tumors

Steven J. M. Jones, Andrew H. Beck, Joshua F. McMichael, 2012, Nature.

Divergent clonal selection dominates medulloblastoma at recurrence

Gary D. Bader, Steven J. M. Jones, Gary D Bader, 2016, Nature.

The Molecular Taxonomy of Primary Prostate Cancer

Steven J. M. Jones, Joshua M. Stuart, Richard A. Moore, 2015, Cell.

ALEXA: a microarray design platform for alternative expression analysis

O. Griffith, M. Marra, M. Hirst, 2008, Nature Methods.

Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes.

Richard A. Moore, Thomas Zeng, R. Holt, 2011, Genome research.

The Completion of the Mammalian Gene Collection (mgc) Recommended Citation

Richard A. Moore, Lillian D. Riddick, Charles L. G. Comstock, 2022 .

Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling

Ali Bashashati, Thomas Zeng, Stephen Yip, 2013, The Journal of pathology.

Interfaces of Malignant and Immunologic Clonal Dynamics in Ovarian Cancer

Wyeth W. Wasserman, Sohrab P. Shah, Ali Bashashati, 2018, Cell.

Novel Avian Influenza H7N3 Strain Outbreak

M. Marra, M. Hirst, Thomas Zeng, 2004 .

Systematic recovery and analysis of full-ORF human cDNA clones.

O. Griffith, M. Marra, Thomas Zeng, 2004, Genome research.

And Discovery in Human Embryonic Stem Cells Application of Massively Parallel Sequencing to Microrna Profiling Material Supplemental

Ryan D. Morin, M. Marra, M. Hirst, 2022 .

Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

Thomas Zeng, Richard Varhol, Martin Hirst, 2008, Nucleic acids research.

Evolution of an adenocarcinoma in response to selection by targeted kinase inhibitors

Steven J. M. Jones, Inanc Birol, Malachi Griffith, 2010, Genome Biology.

Identification and characterization of Hoxa9 binding sites in hematopoietic cells.

A. Hero, Steven J. M. Jones, Yongsheng Huang, 2012, Blood.

In-depth characterization of the microRNA transcriptome in a leukemia progression model.

Malachi Griffith, Thomas Zeng, Ryan D. Morin, 2008, Genome research.

Retinoblastoma-binding proteins 4 and 9 are important for human pluripotent stem cell maintenance.

Elizabeth D. Wederell, Allen D. Delaney, M. Marra, 2011, Experimental hematology.

LongSAGE profiling of nine human embryonic stem cell lines

Steven J. M. Jones, Ryan D. Morin, Allen D. Delaney, 2007, Genome Biology.

The interface of malignant and immunologic clonal dynamics in high-grade serous ovarian cancer

Richard A. Moore, Yi Kan Wang, Scott D. Brown, 2017, bioRxiv.

Use of mutation profiles to refine the classification of endometrial carcinomas

Thomas Zeng, Martin Hirst, Kane Tse, 2012, The Journal of pathology.

A clinically validated diagnostic second-generation sequencing assay for detection of hereditary BRCA1 and BRCA2 mutations.

Steven J. M. Jones, Richard A. Moore, I. Birol, 2013, The Journal of molecular diagnostics : JMD.

Clonal analysis via barcoding reveals diverse growth and differentiation of transplanted mouse and human mammary stem cells.

M. Hirst, Yongjun Zhao, Thomas Zeng, 2014, Cell stem cell.

Clonal evolution of high‐grade serous ovarian carcinoma from primary to recurrent disease

Yongjun Zhao, Thomas Zeng, R. Holt, 2013, The Journal of pathology.

MEN1 mutations in Hürthle cell (oncocytic) thyroid carcinoma.

Steven J. M. Jones, Richard A. Moore, S. Wiseman, 2015, The Journal of clinical endocrinology and metabolism.

Preparation and analysis of microRNA libraries using the Illumina massively parallel sequencing technology.

M. Marra, M. Hirst, Yongjun Zhao, 2010, Methods in molecular biology.

Novel Avian Influenza H7N3 Strain Outbreak, British Columbia

M. Marra, M. Hirst, Thomas Zeng, 2004, Emerging infectious diseases.

Genomic analysis of a rare human tumor

Inanç Birol, Obi L. Griffith, Steven J. M. Jones, 2010, BMC Bioinformatics.

Sample Tracking Using Unique Sequence Controls.

Thomas Zeng, Richard A. Moore, Irene Li, 2019, The Journal of molecular diagnostics : JMD.

The completion of the Mammalian Gene Collection (MGC).

Ryan D. Morin, Richard A. Moore, Lillian D. Riddick, 2009, Genome research.

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach

Steven J. M. Jones, E. Mardis, M. Marra, 2006 .

No nodule left behind: evaluating lung nodule malignancy classification with different stratification schemes

Roselyne B. Tchoua, Thomas Zeng, J. Furst, 2023, Medical Imaging.

ARID1A mutations in endometriosis-associated ovarian carcinomas.

Richard A. Moore, Allen D. Delaney, S. Fereday, 2010, The New England journal of medicine.

Comprehensive genomic characterization of squamous cell lung cancers

Joshua M. Stuart, Brian D. O’Connor, Charles J. Vaske, 2012, Nature.