D. Trede

发表

A new classification method for MALDI imaging mass spectrometry data acquired on formalin-fixed paraffin-embedded tissue samples.

R. Casadonte, M. Kriegsmann, J. Kriegsmann, 2017, Biochimica et Biophysica Acta - Proteins and Proteomics.

Greedy solution of ill-posed problems: error bounds and exact inversion

D. Lorenz, D. Trede, L. Denis, 2009, 0904.0154.

Where imaging mass spectrometry stands: here are the numbers

Andrew D. Palmer, D. Trede, Andrew Palmer, 2016, Metabolomics.

MRI-compatible pipeline for three-dimensional MALDI imaging mass spectrometry using PAXgene fixation.

Stefan Heldmann, Michael Becker, Theodore Alexandrov, 2013, Journal of proteomics.

MALDI mass spectrometric imaging based identification of clinically relevant signals in prostate cancer using large‐scale tissue microarrays

Malte Buchholz, Michael Becker, Dennis Trede, 2013, International journal of cancer.

Hybrid Regularization and Sparse Reconstruction of Imaging Mass Spectrometry Data

D. Trede, P. Maass, T. Alexandrov, 2013 .

The challenge of on-tissue digestion for MALDI MSI— a comparison of different protocols to improve imaging experiments

D. Trede, Birte Beine, C. Henkel, 2015, Analytical and Bioanalytical Chemistry.

2D and 3D MALDI-imaging: conceptual strategies for visualization and data mining.

Stefan Heldmann, Bernd Fischer, Herbert Thiele, 2014, Biochimica et biophysica acta.

Histomolecular interpretation of pleomorphic adenomas of the salivary gland by matrix‐assisted laser desorption ionization imaging and spatial segmentation

D. Trede, M. Becker, L. Hauberg-Lotte, 2015, Head & neck.

Mass Spectrometry Imaging of Microbial Interactions using Matrix-Enhanced Laser Desorption/Ionization Fourier-Transform Ion Cyclotron Resonance Mass Spectrometry

D. Trede, L. Paša-Tolić, R. Chu, 2015 .

Spatial segmentation and metabolite annotation involved in sperm maturation in the rat epididymis by MALDI imaging mass spectrometry.

J. H. Kobarg, Andrew D. Palmer, D. Trede, 2020, Journal of mass spectrometry : JMS.

Exact Support Recovery for Linear Inverse Problems with Sparsity Constraints

D. Trede, 2011 .

Spatial Segmentation of MALDI FT-ICR MSI Data: A Powerful Tool to Explore the Head and Neck Tumor In Situ Lipidome

D. Trede, V. Havlíček, O. Guntinas-Lichius, 2014, Journal of The American Society for Mass Spectrometry.

Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry

Franziska Hoffmann, Orlando Guntinas-Lichius, Kirill Veselkov, 2015, GigaScience.

Benchmark datasets for 3 D MALDI-and DESI-imaging mass spectrometry

Franziska Hoffmann, Orlando Guntinas-Lichius, Michael Becker, 2015 .

Unraveling local tissue changes within severely injured skeletal muscles in response to MSC-based intervention using MALDI Imaging mass spectrometry

J. H. Kobarg, D. Trede, G. Duda, 2018, Scientific Reports.

MALDI imaging mass spectrometry: Discrimination of pathophysiological regions in traumatized skeletal muscle by characteristic peptide signatures

J. Oetjen, D. Trede, G. Duda, 2014, Proteomics.

Three-Dimensional Mass Spectrometry Imaging Identifies Lipid Markers of Medulloblastoma Metastasis

Dennis Trede, Facundo M. Fernández, Ron M. A. Heeren, 2019, Scientific Reports.

Transcriptomic, peptidomic, and mass spectrometry imaging analysis of the brain in the ant Cataglyphis nodus

D. Trede, W. Rössler, Jens Habenstein, 2021, Journal of neurochemistry.

Lipid Changes Associated with Traumatic Brain Injury Revealed by 3D MALDI-MSI.

I. Fournier, D. Trede, F. Kobeissy, 2018, Analytical chemistry.

Sparsity and Compressed Sensing in Inverse Problems

Dirk A. Lorenz, Gerd Teschke, Dennis Trede, 2014 .

Compressed sensing in imaging mass spectrometry

Peter Maaß, Theodore Alexandrov, Dennis Trede, 2013 .

Inline hologram reconstruction with sparsity constraints.

Loïc Denis, Corinne Fournier, Dirk Lorenz, 2009, Optics letters.

Exploring three-dimensional matrix-assisted laser desorption/ionization imaging mass spectrometry data: three-dimensional spatial segmentation of mouse kidney.

Stefan Heldmann, Michael Becker, Theodore Alexandrov, 2012, Analytical chemistry.

Targeted Feature Extraction in MALDI Mass Spectrometry Imaging to Discriminate Proteomic Profiles of Breast and Ovarian Cancer

Dennis Trede, Janina Oetjen, Peter Maass, 2019, Proteomics. Clinical applications.

Integration of 3D multimodal imaging data of a head and neck cancer and advanced feature recognition.

Franziska Hoffmann, Stefan Heldmann, Orlando Guntinas-Lichius, 2017, Biochimica et biophysica acta. Proteins and proteomics.

Super-resolution segmentation of imaging mass spectrometry data: Solving the issue of low lateral resolution.

T. Alexandrov, S. Meding, D. Trede, 2011, Journal of proteomics.

Unraveling local tissue changes within severely injured skeletal muscles in response to MSC-based intervention using MALDI Imaging mass spectrometry

J. H. Kobarg, D. Trede, G. Duda, 2018, Scientific Reports.

On the Importance of Mathematical Methods for Analysis of MALDI-Imaging Mass Spectrometry Data

Theodore Alexandrov, Herbert Thiele, Dennis Trede, 2012, J. Integr. Bioinform..

On the Importance of Mathematical Methods for Analysis of MALDI-Imaging Mass Spectrometry Data

J. H. Kobarg, J. Oetjen, D. Trede, 2012, Journal of integrative bioinformatics.

Mathematical Methods for Imaging Mass Spectrometry

Theodore Alexandrov, Dennis Trede, Jan Hendrik Kobarg, 2011 .

Optimal convergence rates for Tikhonov regularization in Besov scales

D. Lorenz, D. Trede, 2008, 0806.0951.

Where imaging mass spectrometry stands: here are the numbers

Andrew D. Palmer, D. Trede, T. Alexandrov, 2016, Metabolomics.

Magnification of Label Maps With a Topology-Preserving Level-Set Method

Chen Sagiv, Theodore Alexandrov, Dennis Trede, 2012, IEEE Transactions on Image Processing.

Method and apparatus for computer-assisted processing of a digitized image as well as machine-readable data carrier

Theodore Alexandrov, Peter Maass, Dennis Trede, 2011 .

Topology‐Preserving Geodesic Active Contours for Segmentation of High Content Fluorescent Cellular Images

D. Lorenz, D. Trede, P. Maass, 2008 .

Detection of small molecule concentration gradients in ocular tissues and humours.

D. Trede, S. Swearer, N. Demarais, 2020, Journal of mass spectrometry : JMS.

C-Curve: A Finite Alphabet Based Parameter Choice Rule for Elastic-Net in Sporadic Communication

Carsten Bockelmann, Armin Dekorsy, Henning F. Schepker, 2014, IEEE Communications Letters.