D. Garfinkel

发表

Functional profiling of the Saccharomyces cerevisiae genome

Ronald W. Davis, J. Hegemann, P. Philippsen, 2002, Nature.

Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination

D. Garfinkel, C. Bergman, D. Bensasson, 2020, PLoS genetics.

Influences of histone stoichiometry on the target site preference of retrotransposons Ty1 and Ty2 in Saccharomyces cerevisiae.

D. Garfinkel, L. Rinckel, 1996, Genetics.

Nucleotide Excision Repair, Genome Stability, and Human Disease: New Insight from Model Systems

D. Garfinkel, A. Bailis, 2002, Journal of biomedicine & biotechnology.

A Mutational and Transcriptional Analysis of a Tumor Inducing Plasmid of Agrobacterium tumefaciens

D. Garfinkel, M. Gordon, E. Nester, 1981 .

Agrobacterium tumefaciens mutants affected in crown gall tumorigenesis and octopine catabolism

D. Garfinkel, E. Nester, 1980, Journal of bacteriology.

Biochemistry and genetics of Klebsiella pneumoniae mutant strains unable to fix N2

W. Brill, H. Johnston, D. Garfinkel, 1975, Journal of bacteriology.

Substrate specificity of Ty1 integrase

D. Garfinkel, S. Moore, M. Powers, 1995, Journal of virology.

Genetic redundancy between SPT23 and MGA2: regulators of Ty-induced mutations and Ty1 transcription in Saccharomyces cerevisiae

D. Garfinkel, I. Yamashita, S. Zhang, 1997, Molecular and cellular biology.

Single-step selection for Ty1 element retrotransposition.

D. Garfinkel, M. Curcio, 1991, Proceedings of the National Academy of Sciences of the United States of America.

Posttranslational control of Ty1 retrotransposition occurs at the level of protein processing

D. Garfinkel, M. Curcio, M. Curcio, 1992, Molecular and cellular biology.

Multimeric arrays of the yeast retrotransposon Ty

D. Garfinkel, J. Strathern, K. Weinstock, 1990, Molecular and cellular biology.

Evolution of Ty1 copy number control in yeast by horizontal transfer of a gag gene

D. Garfinkel, C. Bergman, D. Bensasson, 2019, bioRxiv.

Ty RNA levels determine the spectrum of retrotransposition events that activate gene expression in Saccharomyces cerevisiae

J. Boeke, D. Garfinkel, A. Hedge, 2004, Molecular and General Genetics MGG.

Transpositional competence and transcription of endogenous Ty elements in Saccharomyces cerevisiae: implications for regulation of transposition

D. Garfinkel, M. Curcio, N. J. Sanders, 1988, Molecular and cellular biology.

Functional organization of the retrotransposon Ty from Saccharomyces cerevisiae: Ty protease is required for transposition

D. Garfinkel, J. Boeke, N. J. Sanders, 1988 .

Functional organization of the retrotransposon Ty from Saccharomyces cerevisiae: Ty protease is required for transposition.

J. Boeke, D. Garfinkel, N. J. Sanders, 1988, Molecular and cellular biology.

Ty element transposition: Reverse transcriptase and virus-like particles

G. Fink, J. Boeke, D. Garfinkel, 1985, Cell.

The Genomic RNA in Ty1 Virus-Like Particles Is Dimeric

D. Garfinkel, A. Rein, S. Moore, 2000, Journal of Virology.

Insertional mutagenesis by Ty elements in Saccharomyces cerevisiae.

D. Garfinkel, 1996, Methods in molecular biology.

Heterogeneous functional Ty1 elements are abundant in the Saccharomyces cerevisiae genome.

Joan, D. Garfinkel, M. Curcio, 1994, Genetics.

Ty mutagenesis in Saccharomyces cerevisiae.

D. Garfinkel, J. Strathern, 1991, Methods in enzymology.

Cytokinin/auxin balance in crown gall tumors is regulated by specific loci in the T-DNA.

R. O. Morris, D. Garfinkel, M. Gordon, 1983, Proceedings of the National Academy of Sciences of the United States of America.

Sequences homologous to Agrobacterium rhizogenes T-DNA in the genomes of uninfected plants

D. Garfinkel, F. White, M. Gordon, 1983, Nature.

Characterizing the functions of Ty1 Gag and the Gag-derived restriction factor p22/p18

Katarzyna J Purzycka, D. Garfinkel, Katarzyna Pachulska-Wieczorek, 2016, Mobile genetic elements.

Nucleotide sequence and transcript mapping of the tmr gene of the pTiA6NC octopine Ti-plasmid: a bacterial gene involved in plant tumorigenesis.

D. Garfinkel, H. Klee, M. Gordon, 1984, Journal of molecular and applied genetics.

element cDNA when integration is blocked. Efficient homologous recombination of Ty1

D. Garfinkel, G. Sharon, T. Burkett, 2013 .

A Ty1 Integrase Nuclear Localization Signal Required for Retrotransposition

D. Garfinkel, L. Rinckel, S. Moore, 1998, Molecular and Cellular Biology.

Multimeric Arrays oftheYeastRetrotransposon Ty

D. Garfinkel, J. Strathern, K. Weinstock, 1990 .

Chemical cleavage at aspartyl residues for protein identification.

D. Garfinkel, R. Fisher, R. Sowder, 2001, Analytical chemistry.

CROWN GALL – NATURE'S GENETIC ENGINEER

D. Garfinkel, P. O'Hara, H. Klee, 1982 .

Correct Integration of Model Substrates by Ty1 Integrase

D. Garfinkel, S. Moore, 2000, Journal of Virology.

Cell Compartment-Specific Folding of Ty1 Long Terminal Repeat Retrotransposon RNA Genome

D. Garfinkel, Katarzyna Pachulska-Wieczorek, Małgorzata Zawadzka, 2022, Viruses.

The Ty1 Retrotransposon Restriction Factor p22 Targets Gag

D. Garfinkel, N. Kannan, Jessica M. Tucker, 2015, PLoS genetics.

Disruption of a silencer domain by a retrotransposon.

D. Garfinkel, B. Shafer, J. Strathern, 1992, Genetics.

An Agrobacterium transformation in the evolution of the genus Nicotiana

R. Amasino, D. Garfinkel, M. Gordon, 1986, Nature.

Single-step selection for Tyl element retrotransposition (Saccharomyces cerevisiae/reverse transcription/artificial intron)

D. Garfinkel, M. Curcio, 2016 .

Genetic analysis of crown gall: Fine structure map of the T-DNA by site-directed mutagenesis

D. Garfinkel, F. White, M. Gordon, 1981, Cell.

Retroviral-like determinants and functions required for dimerization of Ty1 retrotransposon RNA

Katarzyna J Purzycka, D. Garfinkel, Katarzyna Pachulska-Wieczorek, 2019, RNA biology.

Regulation of retrotransposition in Saccharomyces cerevisiae

D. Garfinkel, M. Curcio, 1991, Molecular microbiology.

Genetic loose change: how retroelements and reverse transcriptase heal broken chromosomes.

D. Garfinkel, 1997, Trends in microbiology.

MGA2 or SPT23 is required for transcription of the delta9 fatty acid desaturase gene, OLE1, and nuclear membrane integrity in Saccharomyces cerevisiae.

D. Garfinkel, S. Zhang, Y. Skalsky, 1999, Genetics.

Molecular characterization of the SPT23 gene: A dosage‐dependent suppressor of ty‐induced promoter mutations from Saccharomyces cerevisiae

D. Garfinkel, T. Burkett, Thomas J. Burkett, 1994, Yeast.

“y-Glutamyltransferase:Kinetic Properties and Assay ConditionsWhen ‘y-Glutamyl-4-Nitroanilideand Its 3-Carboxy Derivative Are Used as Donor Substrates

D. Garfinkel, J. London, D. Fetterolf, 2004 .

Hybrid Ty1/HIV-1 elements used to detect inhibitors and monitor the activity of HIV-1 reverse transcriptase.

D. Garfinkel, J. Strathern, P. Boyer, 1998, Proceedings of the National Academy of Sciences of the United States of America.

Genome evolution mediated by Ty elements in Saccharomyces

D. Garfinkel, 2005, Cytogenetic and Genome Research.

HIV reverse transcription in yeast

D. Garfinkel, J. Strathern, D. Nissley, 1996, Nature.

Ty elements transpose through an RNA intermediate

G. Fink, J. Boeke, D. Garfinkel, 1985, Cell.

Long-Read Genome Assembly of Saccharomyces uvarum Strain CBS 7001

D. Garfinkel, C. Bergman, Jingxuan Chen, 2022, Microbiology resource announcements.

Transcriptional silencing of Ty1 elements in the RDN1 locus of yeast.

D. Garfinkel, K. Knudsen, M. Curcio, 1997, Genes & development.

RNA-mediated recombination in S. cerevisiae

D. Garfinkel, J. Strathern, L. K. Derr, 1991, Cell.

7 Ty Mutagenesis

D. Garfinkel, M. Curcio, V. Smith, 1998 .

Transposon tagging using Ty elements in yeast.

D. Garfinkel, B. Shafer, J. Strathern, 1988, Genetics.

Reproducible evaluation of short-read transposable element detectors and species-wide data mining of insertion patterns in yeast

D. Garfinkel, C. Bergman, Shunhua Han, 2023, bioRxiv.

Posttranslational Regulation of Ty1 Retrotransposition by Mitogen-Activated Protein Kinase Fus3

D. Garfinkel, D. Conte, M. Curcio, 1998, Molecular and Cellular Biology.

Posttranslational inhibition of Ty1 retrotransposition by nucleotide excision repair/transcription factor TFIIH subunits Ssl2p and Rad3p.

D. Garfinkel, L. Rinckel, M. Curcio, 1998, Genetics.

Ribosomal protein and biogenesis factors affect multiple steps during movement of the Saccharomyces cerevisiae Ty1 retrotransposon

D. Garfinkel, P. Farabaugh, H. Ahn, 2015, Mobile DNA.

Transcriptional silencing of Tyl elements in the RDNl locus of yeast

D. Garfinkel, K. Knudsen, M. Curcio, 2011 .

BUD22 Affects Ty1 Retrotransposition and Ribosome Biogenesis in Saccharomyces cerevisiae

D. Garfinkel, P. Farabaugh, K. Nyswaner, 2010, Genetics.

Post-transcriptional cosuppression of Ty1 retrotransposition.

D. Garfinkel, Jun Wang, Jae-yong Cho, 2003, Genetics.

The Rad27 (Fen-1) nuclease inhibits Ty1 mobility in Saccharomyces cerevisiae.

D. Garfinkel, A. Sundararajan, Bum-Soo Lee, 2003, Genetics.

Genetic redundancy between SPT23 and MGA2: regulators of Ty-induced mutations and Ty1 transcription in Saccharomyces cerevisiae

D. Garfinkel, I. Yamashita, S. Zhang, 1997, Molecular and cellular biology.

Ribosome Biogenesis Modulates Ty1 Copy Number Control in Saccharomyces cerevisiae

D. Garfinkel, Joshua A. Arribere, H. Ahn, 2017, Genetics.

A trans-Dominant Form of Gag Restricts Ty1 Retrotransposition and Mediates Copy Number Control

D. Garfinkel, W. Gilbert, Wendy V. Gilbert, 2015, Journal of Virology.

P-Body Components Are Required for Ty1 Retrotransposition during Assembly of Retrotransposition-Competent Virus-Like Particles

K. Nagashima, D. Garfinkel, S. Lockett, 2009, Molecular and Cellular Biology.

Posttranslational interference of Ty1 retrotransposition by antisense RNAs

D. Garfinkel, Emiko Matsuda, 2009, Proceedings of the National Academy of Sciences.

Chromatin-Associated Genes Protect the Yeast Genome From Ty1 Insertional Mutagenesis

R. Stephens, D. Garfinkel, M. Yi, 2008, Genetics.

S-Phase Checkpoint Pathways Stimulate the Mobility of the Retrovirus-Like Transposon Ty1

D. Garfinkel, M. Curcio, D. Scholes, 2007, Molecular and Cellular Biology.

A rare tRNA-Arg(CCU) that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae.

Y. Nakamura, J. Boeke, D. Garfinkel, 1993, Genetics.

Ty1 Copy Number Dynamics in Saccharomyces

D. Garfinkel, K. Stefanisko, K. Nyswaner, 2005, Genetics.

In vivo structure of the Ty1 retrotransposon RNA genome

D. Garfinkel, Katarzyna Pachulska-Wieczorek, A. Andrzejewska, 2021, Nucleic acids research.

Analysis of a Ty1‐less variant of Saccharomyces paradoxus: the gain and loss of Ty1 elements

D. Garfinkel, G. Liti, K. Stefanisko, 2004, Yeast.

Retroelements in Microorganisms

D. Garfinkel, 1992 .

Ty1 retrovirus-like element Gag contains overlapping restriction factor and nucleic acid chaperone functions

Katarzyna J Purzycka, Julita Gumna, Katarzyna Pachulska-Wieczorek, 2015, Nucleic acids research.

RNA Binding Properties of the Ty1 LTR-Retrotransposon Gag Protein

D. Garfinkel, Katarzyna Pachulska-Wieczorek, Julita Gumna, 2021, International journal of molecular sciences.

A self-encoded capsid derivative restricts Ty1 retrotransposition in Saccharomyces

D. Garfinkel, Katarzyna Pachulska-Wieczorek, Jessica M. Tucker, 2015, Current Genetics.

Ty1 Gag Enhances the Stability and Nuclear Export of Ty1 mRNA

D. Garfinkel, S. Lockett, M. Checkley, 2013, Traffic.

Functional Analysis of N-Terminal Residues of Ty1 Integrase

D. Garfinkel, S. Moore, 2009, Journal of Virology.

Retrotransposon Suicide: Formation of Ty1 Circles and Autointegration via a Central DNA Flap

D. Garfinkel, S. Hughes, Jangsuk Oh, 2006, Journal of Virology.

Nucleotide Excision Repair/TFIIH Helicases Rad3 and Ssl2 Inhibit Short-Sequence Recombination and Ty1 Retrotransposition by Similar Mechanisms

D. Garfinkel, A. Bailis, Bum-Soo Lee, 2000, Molecular and Cellular Biology.

The Saccharomyces cerevisiae DNA recombination and repair functions of the RAD52 epistasis group inhibit Ty1 transposition.

D. Garfinkel, B. Shafer, A. Rattray, 2000, Genetics.

Posttranslational Inhibition of Ty 1 Retrotransposition by Nucleotide Excision Repair / Transcription Factor TFIIH Subunits Ssl 2 p and Rad 3 p

D. Garfinkel, L. Rinckel, M. Curcio, 1998 .

Efficient homologous recombination of Ty1 element cDNA when integration is blocked

D. Garfinkel, G. Sharon, T. Burkett, 1994, Molecular and cellular biology.

Ty element-induced temperature-sensitive mutations of Saccharomyces cerevisiae.

Y. Nakamura, D. Garfinkel, B. Shafer, 1992, Genetics.

Proteolytic processing of pol-TYB proteins from the yeast retrotransposon Ty1

D. Garfinkel, A. Hedge, T. Copeland, 1991, Journal of virology.

The mechanism and consequences of retrotransposition

G. Fink, J. Boeke, D. Garfinkel, 1986 .

An interchangeable prion-like domain is required for Ty1 retrotransposition

D. Garfinkel, Jeannette V. Taylor, Sean L. Beckwith, 2023, bioRxiv.

Genome Assembly of the Ty1-Less Saccharomyces paradoxus Strain DG1768

P. Philippsen, D. Garfinkel, C. Bergman, 2022, Microbiology resource announcements.

p205, A potential tumor suppressor, inhibits cell proliferation via multiple pathways of cell cycle regulation

D. Garfinkel, P. Kaldis, K. Stefanisko, 2006, FEBS letters.

Utilization of microhomologous recombination in yeast to generate targeting constructs for mammalian genes.

I. Khrebtukova, D. Garfinkel, K. Stark, 1998, Mutation research.

Structure of a Ty1 restriction factor reveals the molecular basis of transposition copy number control

D. Garfinkel, I. Taylor, J. Stoye, 2021, Nature Communications.

Tumor Suppressor p 53 Can Participate in Transcriptional Induction of the GADD 45 Promoter in the Absence of Direct DNA Binding

D. Garfinkel, D. Conte, M. Curcio, 1998 .

Influence of RNA structural elements on Ty1 retrotransposition

Jef D. Boeke, Katarzyna J Purzycka, J. Boeke, 2013, Mobile genetic elements.

Exploring Ty1 retrotransposon RNA structure within virus-like particles

Katarzyna J Purzycka, D. Garfinkel, M. Legiewicz, 2012, Nucleic acids research.

Structure of Ty1 Internally Initiated RNA Influences Restriction Factor Expression

Katarzyna J Purzycka, D. Garfinkel, Marcin Biesiada, 2017, Viruses.

Nucleotide sequence of the tms genes of the pTiA6NC octopine Ti plasmid: two gene products involved in plant tumorigenesis.

D. Garfinkel, H. Klee, M. Gordon, 1984, Proceedings of the National Academy of Sciences of the United States of America.

The biology and exploitation of the retrotransposon Ty in Saccharomyces cerevisiae.

D. Garfinkel, M. Curcio, N. J. Sanders, 1989, Genome.

New lines of host defense: inhibition of Ty1 retrotransposition by Fus3p and NER/TFIIH.

D. Garfinkel, M. Curcio, 1999, Trends in genetics : TIG.

Sensitive Phenotypic Detection of Minor Drug-Resistant Human Immunodeficiency Virus Type 1 Reverse Transcriptase Variants

D. Garfinkel, J. Strathern, J. Mellors, 2005, Journal of Clinical Microbiology.

Survival strategies for transposons and genomes

D. Garfinkel, Sandra L. Martin, 2003, Genome Biology.

Reproducible evaluation of transposable element detectors with McClintock 2 guides accurate inference of Ty insertion patterns in yeast

D. Garfinkel, C. Bergman, Shunhua Han, 2023, bioRxiv.

A self-encoded capsid derivative restricts Ty1 retrotransposition in Saccharomyces

Katarzyna J Purzycka, D. Garfinkel, Katarzyna Pachulska-Wieczorek, 2016, Current Genetics.

An interchangeable prion-like domain is required for Ty1 retrotransposition

D. Garfinkel, R. Guerrero-Ferreira, Sean L. Beckwith, 2023, Proceedings of the National Academy of Sciences of the United States of America.

Ty1 escapes restriction by the self-encoded factor p22 through mutations in capsid

D. Garfinkel, Jessica M. Tucker, 2016, Mobile genetic elements.

The boundaries and copy numbers of Ti plasmid T-DNA vary in crown gall tumors

M. Chilton, D. Garfinkel, R. Nutter, 2004, Molecular and General Genetics MGG.

Evolution of a Restriction Factor by Domestication of a Yeast Retrotransposon

D. Garfinkel, Jingxuan Chen, J. A. Hannon-Hatfield, 2024, Molecular biology and evolution.

Horizontal transfer and recombination fuel Ty4 retrotransposon evolution in Saccharomyces

D. Garfinkel, Jingxuan Chen, Casey M. Bergman, 2023, bioRxiv.