D. Stillman

发表

3 p and Rpd 3 p transcriptional regulators . A large protein complex containing the yeast

M. Kasten, S. Dorland, D. Stillman, 1996 .

Yeast global transcriptional regulators Sin4 and Rgr1 are components of mediator complex/RNA polymerase II holoenzyme.

D. Stillman, R. Kornberg, William Arbuthnot Sir Lane, 1995, Proceedings of the National Academy of Sciences of the United States of America.

ACE2 is required for daughter cell-specific G1 delay in Saccharomyces cerevisiae

Laura L. Newcomb, W. Heideman, Matthew Slattery, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Intramolecular interaction of yeast TFIIB in transcription control.

D. Stillman, X. Zeng, J. Ma, 2000, Nucleic acids research.

The Zap1 transcriptional activator also acts as a repressor by binding downstream of the TATA box in ZRT2

D. Stillman, D. Winge, D. Eide, 2004, The EMBO journal.

The E2F functional analogue SBF recruits the Rpd3(L) HDAC, via Whi5 and Stb1, and the FACT chromatin reorganizer, to yeast G1 cyclin promoters

D. Stillman, David J Stillman, Yaxin Yu, 2009, The EMBO journal.

The transcription factor Swi5 regulates expression of the cyclin kinase inhibitor p40SIC1

K Nasmyth, D. Stillman, K. Nasmyth, 1996, Molecular and cellular biology.

Parallel pathways of gene regulation: homologous regulators SWI5 and ACE2 differentially control transcription of HO and chitinase.

S. Dorland, D. Stillman, D. Thiele, 1992, Genes & development.

Interactions between Pho85 cyclin‐dependent kinase complexes and the Swi5 transcription factor in budding yeast

J. Moffat, B. Andrews, D. Stillman, 2000, Molecular microbiology.

Distinct Regions of the Swi5 and Ace2 Transcription Factors Are Required for Specific Gene Activation*

D. Stillman, Yaxin Yu, Yaxin Yu, 1999, The Journal of Biological Chemistry.

Residues in the Swi5 Zinc Finger Protein That Mediate Cooperative DNA Binding with the Pho2 Homeodomain Protein

D. Stillman, L. Bhoite, David J. Stillman, 1998, Molecular and Cellular Biology.

Characterization of a transcription factor involved in mother cell specific transcription of the yeast HO gene.

A T Bankier, D. Stillman, K. Nasmyth, 1988, The EMBO journal.

Correlation between chromatin association and transcriptional regulation for the Act3p/Arp4 nuclear actin-related protein of Saccharomyces cerevisiae.

D. Stillman, K. Nishimori, Yan Zhang, 2002, Nucleic acids research.

Nucleosomes Are Essential for Proper Regulation of a Multigated Promoter in Saccharomyces cerevisiae

D. Stillman, R. Yarrington, Jenna M Goodrum, 2015, Genetics.

Getting a Transcription Factor to Only One Nucleus Following Mitosis

D. Stillman, Emily J. Parnell, 2008, PLoS biology.

Disruption and mapping of IDI1, the gene for isopentenyl diphosphate isomerase in Saccharomyces cerevisiae

D. Stillman, M. Mayer, C. Poulter, 1992, Yeast.

Multiple actin-related proteins of Saccharomyces cerevisiae are present in the nucleus.

D. Stillman, Y. Zhang, M. Harata, 2000, Journal of biochemistry.

Sds3 (suppressor of defective silencing 3) is an integral component of the yeast Sin3[middle dot]Rpd3 histone deacetylase complex and is required for histone deacetylase activity.

D. Shore, D. Stillman, P. Grant, 2000, The Journal of biological chemistry.

Roles for the Saccharomyces cerevisiae SDS3, CBK1 and HYM1 genes in transcriptional repression by SIN3.

S. Dorland, D. Stillman, M. L. Deegenaars, 2000, Genetics.

New ‘marker swap’ plasmids for converting selectable markers on budding yeast gene disruptions and plasmids

D. Stillman, W. Voth, Yi Wei Jiang, 2003, Yeast.

Regulation of FADD death domain interactions by the death effector domain identified by a modified reverse two-hybrid screen

D. Stillman, A. Thorburn, L. Thomas, 2002 .

Identification and purification of a protein that binds DNA cooperatively with the yeast SWI5 protein

D. Stillman, R. Brazas, 1993 .

Involvement of the SIN4 global transcriptional regulator in the chromatin structure of Saccharomyces cerevisiae

D. Stillman, Y. W. Jiang, Y. Jiang, 1992, Molecular and cellular biology.

The Rts1 Regulatory Subunit of PP2A Phosphatase Controls Expression of the HO Endonuclease via Localization of the Ace2 Transcription Factor*

D. Kellogg, D. Stillman, Lu Bai, 2014, The Journal of Biological Chemistry.

The Rts 1 Regulatory Subunit of PP 2 A Phosphatase Controls Expression of the HO Endonuclease via Localization of the Ace 2 Transcription Factor *

D. Kellogg, D. Stillman, Lu Bai, 2014 .

First time, every time: nucleosomes at a promoter can determine the probability of gene activation.

D. Stillman, W. Voth, 2010, Developmental cell.

FACT activity and histone H3-K56 acetylation promote optimal establishment of chromatin architecture independent of ongoing transcription in Saccharomyces cerevisiae

Laura L. McCullough, D. Stillman, T. Formosa, 2018, bioRxiv.

Role of negative regulation in promoter specificity of the homologous transcriptional activators Ace2p and Swi5p

D. Stillman, W P Voth, D J Stillman, 1996, Molecular and cellular biology.

Establishment and Maintenance of Chromatin Architecture Are Promoted Independently of Transcription by the Histone Chaperone FACT and H3-K56 Acetylation in Saccharomyces cerevisiae

Laura L. McCullough, D. Stillman, T. Formosa, 2019, Genetics.

Genetic Interactions Between Nhp6 and Gcn5 with Mot1 and the Ccr4-Not Complex that Regulate TBP Binding in Saccharomyces cerevisiae

D. Stillman, Debabrata Biswas, Yaxin Yu, 2005 .

Insight Into the Mechanism of Nucleosome Reorganization From Histone Mutants That Suppress Defects in the FACT Histone Chaperone

Laura L. McCullough, D. Stillman, T. Formosa, 2011, Genetics.

Differential binding of a S. cerevisiae RNA polymerase III transcription factor to two promoter segments of a tRNA gene.

D. Stillman, E. Geiduschek, 1984, The EMBO journal.

Mutations in the homologous ZDS1 and ZDS2 genes affect cell cycle progression

D. Stillman, Y. W. Jiang, R. Wellinger, 1996, Molecular and cellular biology.

Both positive and negative regulators of HO transcription are required for mother-cell-specific mating-type switching in yeast

D. Stillman, K. Nasmyth, D. Kipling, 1987, Cell.

A member of the gut mycobiota modulates host purine metabolism exacerbating colitis in mice

Ryan M. O’Connell, D. Stillman, J. Round, 2017, Science Translational Medicine.

Changes in developmental state: demolish the old to construct the new.

D. Stillman, W. Voth, 2003, Genes & development.

The yeast SIN3 gene product negatively regulates the activity of the human progesterone receptor and positively regulates the activities of GAL4 and the HAP1 activator

D. Stillman, B. O’Malley, Z. Nawaz, 1994, Molecular and General Genetics MGG.

Defects in SPT16 or POB3 (yFACT) in Saccharomyces cerevisiae cause dependence on the Hir/Hpc pathway: polymerase passage may degrade chromatin structure.

M. Adams, D. Stillman, T. Formosa, 2002, Genetics.

Coupling Phosphate Homeostasis to Cell Cycle-Specific Transcription: Mitotic Activation of Saccharomyces cerevisiae PHO5 by Mcm1 and Forkhead Proteins

Russell P. Darst, D. Stillman, Archana Dhasarathy, 2009, Molecular and Cellular Biology.

Repressive Chromatin Affects Factor Binding at Yeast HO (Homothallic Switching) Promoter*

D. Stillman, S. Takahata, Yaxin Yu, 2011, The Journal of Biological Chemistry.

PP2ARts1 is a master regulator of pathways that control cell size

S. Gygi, D. Kellogg, Noah Dephoure, 2014, The Journal of cell biology.

A Role for FACT in Repopulation of Nucleosomes at Inducible Genes

D. Stillman, A. Näär, J. L. Nishikawa, 2014, PloS one.

Transcriptional repression in Saccharomyces cerevisiae by a SIN3-LexA fusion protein

H. Wang, D. Stillman, D J Stillman, 1993, Molecular and cellular biology.

In vitro regulation of a SIN3-dependent DNA-binding activity by stimulatory and inhibitory factors.

H. Wang, D. Stillman, 1990, Proceedings of the National Academy of Sciences of the United States of America.

Epigenetic effects on yeast transcription caused by mutations in an actin-related protein present in the nucleus.

D. Stillman, Y. W. Jiang, D. J. Stillman, 1996, Genes & development.

Regulation of HIS4 expression by the Saccharomyces cerevisiae SIN4 transcriptional regulator.

D. Stillman, Y. W. Jiang, 1995, Genetics.

Identification of silencer binding proteins from yeast: possible roles in SIR control and DNA replication

D. Shore, D. Stillman, K. Nasmyth, 1987, The EMBO journal.

SIN3-dependent transcriptional repression by interaction with the Mad1 DNA-binding protein

M. Kasten, D. Stillman, D. Ayer, 1996, Molecular and cellular biology.

Multiple links between the NuA4 histone acetyltransferase complex and epigenetic control of transcription.

D. Stillman, William Arbuthnot Sir Lane, L. Héliot, 2000, Molecular cell.

Architectural Transcription Factors and the SAGA Complex Function in Parallel Pathways To Activate Transcription

D. Stillman, P. Eriksson, Yaxin Yu, 2000, Molecular and Cellular Biology.

Identification of SLF1 as a new copper homeostasis gene involved in copper sulfide mineralization in Saccharomyces cerevisiae

D. Stillman, D. Winge, W. Yu, 1996, Molecular and cellular biology.

FACT and Ash1 promote long-range and bidirectional nucleosome eviction at the HO promoter

D. Stillman, R. Yarrington, Yaxin Yu, 2020, Nucleic acids research.

Forkhead proteins control the outcome of transcription factor binding by antiactivation

J. Lieb, D. Stillman, B. Milash, 2007, The EMBO journal.

Identification of the Saccharomyces cerevisiae genes STB1–STB5 encoding Sin3p binding proteins

D. J. Stillman, M. Kasten, D. Stillman, 1997, Molecular and General Genetics MGG.

The Saccharomyces cerevisiae SIN3 gene, a negative regulator of HO, contains four paired amphipathic helix motifs

P R Nicholson, H. Wang, I. Herskowitz, 1990, Molecular and cellular biology.

Genetic and Physical Interactions Between Yeast RGRl and SZN4 in Chromatin Organization and Transcriptional Regulation

D. Stillman, Y. W. Jiang, David, 2002 .

Ssn6-Tup1 interacts with class I histone deacetylases required for repression.

D. Stillman, W. Du, Y. Mukai, 2000, Genes & development.

A Role for Mediator Core in Limiting Coactivator Recruitment in Saccharomyces cerevisiae

D. Stillman, Lu Bai, R. Yarrington, 2020, Genetics.

A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II.

Kevin Struhl, Min Han, Michael Carey, 2004, Molecular cell.

The protein kinase Pho85 is required for asymmetric accumulation of the Ash1 protein in Saccharomyces cerevisiae

I. Herskowitz, J. Moffat, B. Andrews, 2001, Molecular microbiology.

Degradation of the transcription factor Gcn4 requires the kinase Pho85 and the SCF(CDC4) ubiquitin-ligase complex.

G. Fink, D. Stillman, D. Kornitzer, 2000, Molecular biology of the cell.

Electron-microscopic examination of the binding of a large RNA polymerase III transcription factor to a tRNA gene.

D. Stillman, E. Geiduschek, M. Better, 1985, Journal of molecular biology.

Effects of temperature and single-stranded DNA on the interaction of an RNA polymerase III transcription factor with a tRNA gene

D. Stillman, E. Geiduschek, P. Caspers, 1985, Cell.

ACE2, CBK1, and BUD4 in Budding and Cell Separation

D. Stillman, Aileen E. Olsen, W. Voth, 2005, Eukaryotic Cell.

Nhp6: a small but powerful effector of chromatin structure in Saccharomyces cerevisiae.

D. Stillman, 2010, Biochimica et biophysica acta.

yFACT induces global accessibility of nucleosomal DNA without H2A-H2B displacement.

D. Stillman, T. Formosa, S. Takahata, 2009, Molecular cell.

FACT and Asf1 regulate nucleosome dynamics and coactivator binding at the HO promoter.

D. Stillman, S. Takahata, Yaxin Yu, 2009, Molecular cell.

Structural and Functional Analysis of the Spt16p N-terminal Domain Reveals Overlapping Roles of yFACT Subunits*

D. Stillman, T. Formosa, C. Hill, 2008, Journal of Biological Chemistry.

Spt16–Pob3 and the HMG protein Nhp6 combine to form the nucleosome‐binding factor SPN

D. Stillman, T. Formosa, P. Eriksson, 2001, The EMBO journal.

Independent Recruitment of the Mediator Tail Module to the HO Promoter Suggests Mediator Core Limits Coactivator Recruitment in Saccharomyces cerevisiae

D. Stillman, Lu Bai, R. Yarrington, 2019 .

Regulation of the Yeast Ace2 Transcription Factor during the Cell Cycle*

D. Stillman, Aileen E. Olsen, David J Stillman, 2008, Journal of Biological Chemistry.

Chd1 and yFACT Act in Opposition in Regulating Transcription

D. Stillman, Debabrata Biswas, Rinku Dutta-Biswas, 2007, Molecular and Cellular Biology.

Opposing roles for Set2 and yFACT in regulating TBP binding at promoters

D. Stillman, B. Strahl, T. Formosa, 2006, The EMBO journal.

TATA-Binding Protein Mutants That Are Lethal in the Absence of the Nhp6 High-Mobility-Group Protein

D. Stillman, P. Eriksson, Debabrata Biswas, 2004, Molecular and Cellular Biology.

Different Genetic Functions for the Rpd3(L) and Rpd3(S) Complexes Suggest Competition between NuA4 and Rpd3(S)

D. Stillman, Debabrata Biswas, S. Takahata, 2008, Molecular and Cellular Biology.

Systematic hybrid LOH: a new method to reduce false positives and negatives during screening of yeast gene deletion libraries

Robert J. D. Reid, D. Stillman, R. Rothstein, 2006, Yeast.

pRS yeast vectors with a LYS2 marker.

D. Stillman, A. Thorburn, P. Eriksson, 2004, BioTechniques.

The Yeast FACT Complex Has a Role in Transcriptional Initiation

D. Stillman, T. Formosa, Debabrata Biswas, 2005, Molecular and Cellular Biology.

Role for Nhp6, Gcn5, and the Swi/Snf Complex in Stimulating Formation of the TATA-Binding Protein-TFIIA-DNA Complex

D. Stillman, A. Imbalzano, P. Eriksson, 2004, Molecular and Cellular Biology.

The nuclear actin-related protein of Saccharomyces cerevisiae, Act3p/Arp4, interacts with core histones.

D. Stillman, Y. W. Jiang, M. Harata, 1999, Molecular biology of the cell.

A Role for Chd1 and Set2 in Negatively Regulating DNA Replication in Saccharomyces cerevisiae

D. Stillman, T. Formosa, Debabrata Biswas, 2008, Genetics.

Stochastic expression and epigenetic memory at the yeast HO promoter

Michael M. Mwangi, F. Cross, D. Stillman, 2013, Proceedings of the National Academy of Sciences.

Genetic analysis argues for a coactivator function for the Saccharomyces cerevisiae Tup1 corepressor.

D. Stillman, T. Parnell, Emily J. Parnell, 2021, Genetics.

Genetic analysis argues for a coactivator function for the Saccharomyces cerevisiae Tup1 corepressor

D. Stillman, T. Parnell, Emily J. Parnell, 2021, bioRxiv.

Epistasis analysis of suppressor mutations that allow HO expression in the absence of the yeast SW15 transcriptional activator.

S. Dorland, D. Stillman, Yaxin Yu, 1994, Genetics.

SWI/SNF Binding to the HO Promoter Requires Histone Acetylation and Stimulates TATA-Binding Protein Recruitment

D. Stillman, Yaxin Yu, Emily J. Parnell, 2006, Molecular and Cellular Biology.

Regulation of TATA-Binding Protein Binding by the SAGA Complex and the Nhp6 High-Mobility Group Protein

D. Stillman, P. Eriksson, Yaxin Yu, 2003, Molecular and Cellular Biology.

The Zap 1 transcriptional activator also acts as a repressor by binding downstream of the TATA box in ZRT 2

D. Stillman, D. Winge, D. Eide, 2013 .

The Swi5 activator recruits the Mediator complex to the HO promoter without RNA polymerase II.

D. Stillman, Yaxin Yu, L. Bhoite, 2001, Genes & development.

The Swi 5 activator recruits the Mediator complex to the HO promoter without RNA polymerase II

D. Stillman, Yaxin Yu, L. Bhoite, 2009 .

Genetic interactions between SIN3 mutations and the Saccharomyces cerevisiae transcriptional activators encoded by MCM1, STE12, and SWI1

D. Stillman, H. Wang, L. Reynolds-Hager, 1994, Molecular and General Genetics MGG.

Regulation of Fas-associated Death Domain Interactions by the Death Effector Domain Identified by a Modified Reverse Two-hybrid Screen*

D. Stillman, A. Thorburn, L. Thomas, 2002, The Journal of Biological Chemistry.

Yeast vectors for integration at the HO locus.

D. Stillman, J. Shaw, W P Voth, 2001, Nucleic acids research.

Identification and Purification of a Protein That Binds DNA Cooperatively with the Yeast SWI5 Protein

D. Stillman, R. Brazas, 1993, Molecular and cellular biology.

Identification of a Saccharomyces cerevisiae DNA-binding protein involved in transcriptional regulation

H. Wang, D. Stillman, P. R. Nicholson, 1990, Molecular and cellular biology.

Sds3 (Suppressor of Defective Silencing 3) Is an Integral Component of the Yeast Sin3·Rpd3 Histone Deacetylase Complex and Is Required for Histone Deacetylase Activity*

Jerry L. Workman, D. Shore, D. Stillman, 2000, The Journal of Biological Chemistry.

Genetic Interactions Between Nhp6 and Gcn5 With Mot1 and the Ccr4–Not Complex That Regulate Binding of TATA-Binding Protein in Saccharomyces cerevisiae

D. Stillman, Debabrata Biswas, Yaxin Yu, 2006, Genetics.

Global alterations in chromatin accessibility associated with loss of SIN4 function.

D. Stillman, Y. W. Jiang, S. Roth, 1997, Nucleic acids research.

Dancing the cell cycle two-step: regulation of yeast G1-cell-cycle genes by chromatin structure.

D. Stillman, David J Stillman, 2013, Trends in biochemical sciences.

Ash1 and Tup1 dependent repression of the Saccharomyces cerevisiae HO promoter requires activator-dependent nucleosome eviction

D. Stillman, Lu Bai, T. Parnell, 2020, bioRxiv.

Mutations in the Pho2 (Bas2) Transcription Factor That Differentially Affect Activation with Its Partner Proteins Bas1, Pho4, and Swi5*

D. Stillman, R. Rolfes, Lance R Thomas, 2002, The Journal of Biological Chemistry.

Disruption of promoter memory by synthesis of a long noncoding RNA

D. Stillman, N. Elde, E. Chuong, 2016, Proceedings of the National Academy of Sciences.

Spatiotemporal Cascade of Transcription Factor Binding Required for Promoter Activation

D. Stillman, R. Yarrington, Jared S. Rudd, 2014, Molecular and Cellular Biology.

Multiple Negative Regulators Restrict Recruitment of the SWI/SNF Chromatin Remodeler to the HO Promoter in Saccharomyces cerevisiae

D. Stillman, Emily J. Parnell, 2019, Genetics.

Genetic screens identify multiple negative regulators that additively restrict recruitment of the SWI/SNF chromatin remodeler to the HO promoter in Saccharomyces cerevisiae

D. Stillman, Emily J. Parnell, 2019, bioRxiv.

Independent Recruitment of the Mediator Tail Module to the HO Promoter Suggests Mediator Core Limits Coactivator Recruitment in Saccharomyces cerevisiae.

D. Stillman, Lu Bai, R. Yarrington, 2020, Genetics.

Overlapping roles for the histone acetyltransferase activities of SAGA and Elongator in vivo

D. Stillman, J. Fellows, J. Svejstrup, 2000, The EMBO journal.

Correlations between transcription of a yeast tRNA gene and transcription factor-DNA interactions.

D. Stillman, E. Geiduschek, A. Sivertsen, 1984, The Journal of biological chemistry.

Specific interactions of Saccharomyces cerevisiae proteins with a promoter region of eukaryotic tRNA genes.

D. Stillman, E. Geiduschek, R. Klemenz, 1982, Proceedings of the National Academy of Sciences of the United States of America.

Chromosome-Scale Genetic Mapping Using a Set of 16 Conditionally Stable Saccharomyces cerevisiae Chromosomes

Robert J. D. Reid, D. Stillman, R. Rothstein, 2008, Genetics.

Altered structure of the DNA duplex recognized by yeast transcription factor Reb1p.

D. Stillman, D. Davis, 1997, Nucleic acids research.

In vivo functions of histone acetylation/deacetylation in Tup1p repression and Gcn5p activation.

D. Stillman, W. Zhang, D. Edmondson, 1998, Cold Spring Harbor symposia on quantitative biology.

The Swi5 zinc-finger and Grf10 homeodomain proteins bind DNA cooperatively at the yeast HO promoter.

D. Stillman, R. Brazas, D J Stillman, 1993, Proceedings of the National Academy of Sciences of the United States of America.

Shields up: the Tup1-Cyc8 repressor complex blocks coactivator recruitment.

D. Stillman, Emily J. Parnell, 2011, Genes & development.

Determining the Requirements for Cooperative DNA Binding by Swi5p and Pho2p (Grf10p/Bas2p) at the HO Promoter (*)

D. Stillman, R. Brazas, D. Neklason, 1995, The Journal of Biological Chemistry.

PP 2 ARts 1 is a master regulator of pathways that control cell size

S. Gygi, D. Kellogg, D. Stillman, 2022 .

A Unified Nomenclature for Protein Subunits of Mediator Complexes Conserved from Fungi to Humans: Med6/pmc5/arc/ Drip33/trap32, Med7/arc/drip/trap34/crsp33, Linking Transcriptional Regulators to Rna Polymerase Ii Arc/crsp/drip150/trap170, Soh1/trap18 (note That Soh1 Has Not Been yet Identified in Pu

F. Holstege, S. W. Emmons, A. Hinnebusch, 2022 .

Long-range interactions at the HO promoter

K Nasmyth, D. Stillman, K. Nasmyth, 1997, Molecular and cellular biology.

Functional Mapping of Bas2

D. Stillman, R. Rolfes, Helen H. Sun, 2002, The Journal of Biological Chemistry.

Genetic and physical interactions between yeast RGR1 and SIN4 in chromatin organization and transcriptional regulation.

D. Stillman, P. Dohrmann, Y. Jiang, 1995, Genetics.

Nhp6: a small but powerful effector of chromatin structure in Saccharomyces cerevisiae.

D. Stillman, 2010, Biochimica et biophysica acta.

Insight Into the Mechanism of Nucleosome Reorganization From Histone Mutants That Suppress Defects in the FACT Histone Chaperone

D. Stillman, T. Formosa, Aileen E. Olsen, 2011, Genetics.