S. Pandit

发表

Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms

Pablo Carbonell, Jean-Loup Faulon, Shashi Bhushan Pandit, 2012, BMC Systems Biology.

Unraveling the structural landscape of intra-chain domain interfaces: Implication in the evolution of domain-domain interactions

S. Pandit, Rivi Verma, 2019, PloS one.

Structural and Functional Characterization of Gene Products Encoded in the Human Genome by Homology Detection

S. Pandit, N. Srinivasan, S. Balaji, 2004, IUBMB life.

Enhanced functional and structural domain assignments using remote similarity detection procedures for proteins encoded in the genome ofMycobacterium tuberculosis H37Rv

S. Pandit, N. Srinivasan, Seema Namboori, 2004, Journal of Biosciences.

Phosphoprotein and phosphopeptide interactions with the FHA domain from Arabidopsis kinase-associated protein phosphatase.

J. Skolnick, S. Pandit, S. V. Van Doren, 2007, Biochemistry.

Survey for g‐proteins in the prokaryotic genomes: Prediction of functional roles based on classification

S. Pandit, N. Srinivasan, 2003, Proteins.

Evolutionarily conserved and conformationally constrained short peptides might serve as DNA recognition elements in intrinsically disordered regions.

S. Pandit, K. Sandhu, P. Choudhary, 2014, Molecular bioSystems.

Erratum to: Enhanced functional and structural domain assignments using remote similarity detection procedures for proteins encoded in the genome of Mycobacterium tuberculosis H37Rv

S. Pandit, N. Srinivasan, Seema Namboori, 2007, Journal of Biosciences.

An inquiry‐based approach in large undergraduate labs: Learning, by doing it the “wrong” way

S. Pandit, Arpita Mrigwani, Anand K Bachhawat, 2020, Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology.

Tasser‐Based Protein Structure Prediction

Jeffrey Skolnick, Hongyi Zhou, Shashi B. Pandit, 2010 .

PSiFR: an integrated resource for prediction of protein structure and function

Hongyi Zhou, Michal Brylinski, Jeffrey Skolnick, 2010, Bioinform..

PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families

Oruganty Krishnadev, N. Rekha, Shashi B. Pandit, 2005, Nucleic Acids Res..

A New Domain Family in the Superfamily of Alkaline Phosphatases

Shashi B. Pandit, Narayanaswamy Srinivasan, Rana Bhadra, 2005, Silico Biol..

Integration of related sequences with protein three-dimensional structural families in an updated version of PALI database

S. Balaji, Shashi B. Pandit, Narayanaswamy Srinivasan, 2003, Nucleic Acids Res..

Identification and analysis of a new family of bacterial serine proteinases

Shashi B. Pandit, Narayanaswamy Srinivasan, S. Pandit, 2004, Silico Biol..

Curcumin Inhibits Membrane-Damaging Pore-Forming Function of the β-Barrel Pore-Forming Toxin Vibrio cholerae Cytolysin

S. Pandit, Mahendra Singh, K. Chattopadhyay, 2022, Frontiers in Microbiology.

Delhi's waste conflict

S. Pandit, F. Demaria, Seth Schindler, 2012 .

TASSER-Lite: an automated tool for protein comparative modeling.

Yang Zhang, Jeffrey Skolnick, Shashi Bhushan Pandit, 2006, Biophysical journal.

Dynamics of Protein-Protein Interaction Network in Plasmodium Falciparum

Shashi B. Pandit, Narayanaswamy Srinivasan, Smita Mohanty, 2009 .

Proteomics analysis of carbon-starved Mycobacterium smegmatis: induction of Dps-like protein.

S. Pandit, N. Srinivasan, D. Chatterji, 2002, Protein engineering.

Recognition of remotely related structural homologues using sequence profiles of aligned homologous protein structures

Shashi B. Pandit, Narayanaswamy Srinivasan, Seema Namboori, 2004, Silico Biol..

SUPFAM - a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes

Shashi B. Pandit, S. Abhiman, Narayanaswamy Srinivasan, 2002, Nucleic Acids Res..

Disulphide bond restrains the C-terminal region of thermostable direct hemolysin during folding to promote oligomerization.

S. Pandit, Nidhi Kundu, K. Chattopadhyay, 2017, The Biochemical journal.

Tyrosine in the hinge region of the pore‐forming motif regulates oligomeric β‐barrel pore formation by Vibrio cholerae cytolysin

S. Pandit, S. Dutta, A. Mondal, 2020, Molecular microbiology.

Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score

Jeffrey Skolnick, Shashi Bhushan Pandit, J. Skolnick, 2008, BMC Bioinformatics.

XTMS: pathway design in an eXTended metabolic space

Pablo Carbonell, Jean-Loup Faulon, Joan Hérisson, 2014, Nucleic Acids Res..

Analysis of TASSER‐based CASP7 protein structure prediction results

Seung Yup Lee, Jeffrey Skolnick, Hongyi Zhou, 2007, Proteins.

CSmetaPred: a consensus method for prediction of catalytic residues

Shailesh Kumar, Shashi Bhushan Pandit, Preeti Choudhary, 2017, BMC Bioinformatics.

SUPFAM: A database of sequence superfamilies of protein domains

S. Balaji, Shashi B. Pandit, Narayanaswamy Srinivasan, 2004, BMC Bioinformatics.

Learning Protein Folding Energy Functions

Alexander G. Gray, Wei Guan, Jeffrey Skolnick, 2011, 2011 IEEE 11th International Conference on Data Mining.

SUPFAM: A database of sequence superfamilies of protein domains

S. Pandit, N. Srinivasan, B. Anand, 2004, BMC Bioinformatics.

TASSER_low‐zsc: An approach to improve structure prediction using low z‐score–ranked templates

Jeffrey Skolnick, Shashi B Pandit, J. Skolnick, 2010, Proteins.

Bioinformatics Applications Note Structural Bioinformatics Psifr: an Integrated Resource for Prediction of Protein Structure and Function

J. Skolnick, Hongyi Zhou, S. Pandit, 2022 .

Uncovering the translatome impact of transcriptome induced diversity in eukaryotes: framework and innovative insights

S. Pandit, Paras Verma, Deeksha Thakur, 2024, bioRxiv.

Exon Nomenclature and Classification of Transcripts (ENACT): Systematic framework to annotate exon attributes

S. Pandit, Paras Verma, Deeksha Thakur, 2024, bioRxiv.