X. Gu

发表

Statistical Framework for Phylogenomic Analysis of Gene Family Expression Profiles

X. Gu, 2004, Genetics.

Role of duplicate genes in genetic robustness against null mutations

Ronald W. Davis, L. Steinmetz, X. Gu, 2003, Nature.

Evolution of duplicate genes versus genetic robustness against null mutations.

X. Gu, 2003, Trends in genetics : TIG.

Induced gene expression in human brain after the split from chimpanzee.

X. Gu, J. Gu, Jianying Gu, 2003, Trends in genetics : TIG.

True navigation and magnetic maps in spiny lobsters

L. Steinmetz, X. Gu, Wen-Hsiung Li, 2022 .

Rapid evolution of expression and regulatory divergences after yeast gene duplication.

X. Gu, Zhongqi Zhang, Wei Huang, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA).

K. Sjölander, E. Koonin, R. DeSalle, 2006, Omics : a journal of integrative biology.

Directional mutational pressure affects the amino acid composition and hydrophobicity of proteins in bacteria

Xun Gu, D. Hewett‐Emmett, X. Gu, 2004, Genetica.

Effective estimation of the minimum number of amino acid residues required for functional divergence between duplicate genes.

X. Gu, Wei Huang, Jingqi Zhou, 2017, Molecular phylogenetics and evolution.

Expression divergence between duplicate genes.

X. Gu, Wen-Hsiung Li, Jing Yang, 2005, Trends in genetics : TIG.

Phylogenomic Distance Method for Analyzing Transcriptome Evolution Based on RNA-seq Data

X. Gu, Wei Huang, Zhixi Su, 2013, Genome Biology and Evolution.

Intron gain and loss in segmentally duplicated genes in rice

X. Gu, C. Buell, Wei Zhu, 2006, Genome Biology.

Evolution of alternative splicing after gene duplication.

X. Gu, Jun Yu, Xiaoqiu Huang, 2005, Genome research.

TIR-Learner, a New Ensemble Method for TIR Transposable Element Annotation, Provides Evidence for Abundant New Transposable Elements in the Maize Genome.

X. Gu, Weijia Su, T. Peterson, 2019, Molecular plant.

Evolution by the birth-and-death process in multigene families of the vertebrate immune system.

M. Nei, X. Gu, T. Sitnikova, 1997, Proceedings of the National Academy of Sciences of the United States of America.

Web-based resources for comparative genomics

X. Gu, Zhixi Su, 2005, Human Genomics.

Ordered origin of the typical two- and three-repeat Myb genes.

X. Gu, Cizhong Jiang, T. Peterson, 2004, Gene.

Statistical methods for testing functional divergence after gene duplication.

X. Gu, X Gu, 1999, Molecular biology and evolution.

An update of DIVERGE software for functional divergence analysis of protein family.

Wei Huang, Xun Gu, Zebulun Arendsee, 2013, Molecular biology and evolution.

Maximum-likelihood approach for gene family evolution under functional divergence.

X. Gu, X Gu, 2001, Molecular biology and evolution.

A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences.

Xun Gu, X. Gu, 2006, Molecular biology and evolution.

DeepHLApan: A Deep Learning Approach for Neoantigen Prediction Considering Both HLA-Peptide Binding and Immunogenicity

X. Gu, Zhixi Su, Shuqing Chen, 2019, Front. Immunol..

The size distribution of insertions and deletions in human and rodent pseudogenes suggests the logarithmic gap penalty for sequence alignment

Xun Gu, X. Gu, Wen-Hsiung Li, 1995, Journal of Molecular Evolution.

Predominant gain of promoter TATA box after gene duplication associated with stress responses.

X. Gu, Z. Gu, Wei Huang, 2011, Molecular biology and evolution.

Further statistical analysis for genome-wide expression evolution in primate brain/liver/fibroblast tissue

Xun Gu, X. Gu, J. Gu, 2003, Human Genomics.

Integrative Analysis of Somatic Mutations in Non-coding Regions Altering RNA Secondary Structures in Cancer Genomes

Melissa J. Davis, X. Gu, Leming Shi, 2019, Scientific Reports.

Novel PAX6 binding sites in the human genome and the role of repetitive elements in the evolution of gene regulation.

Xun Gu, X. Gu, W. Yung, 2002, Genome research.

Determination of the number of conserved chromosomal segments between species.

S Kumar, X. Gu, S. Kumar, 2001, Genetics.

Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana

Xun Gu, C Robin Buell, Shin-Han Shiu, 2010, BMC Evolutionary Biology.

Evolutionary Distance of Gene-Gene Interactions: Estimation under Statistical Uncertainty

X. Gu, 2020, bioRxiv.

Evolutionary Transcriptome Analysis Based on Differentially Expressed (DE) Genes

X. Gu, 2020, bioRxiv.

Histone modification pattern evolution after yeast gene duplication

X. Gu, Wei Huang, Zhixi Su, 2012, BMC Evolutionary Biology.

Case study: Paralog diverged features may help reduce off-target effects of drugs

X. Gu, Jingqi Zhou, Zhining Sa, 2016, bioRxiv.

Genome phylogenetic analysis based on extended gene contents.

Xun Gu, X. Gu, Hongmei Zhang, 2004, Molecular biology and evolution.

A simple method for phylogenomic inference using the information of gene content of genomes.

X. Gu, Bailin Hao, Hongmei Zhang, 2009, Gene.

Analysis of functional divergence within two structurally related glycoside hydrolase families

X. Gu, Blake Mertz, P. Reilly, 2009, Biopolymers.

A Statistical Framework for Evolutionary Analysis of Recurrent Somatic Mutations in Cancers

X. Gu, 2020, bioRxiv.

Mutation-profile-based methods for understanding selection forces in cancer somatic mutations: a comparative analysis

X. Gu, Zhixi Su, Jingqi Zhou, 2017, bioRxiv.

A Computational Analysis Framework for Molecular Cell Dynamics: Case-Study of Exocytosis

X. Gu, Wenhai Chen, Wen Zhou, 2012, PloS one.

Modeling protein interaction network and mechanisms in exocytosis

Bo Su, Tian Xia, Wen Zhou, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

A Site-specific Measure for Rate Difference After Gene Duplication or Speciation

Xun Gu, X. Gu, 2001 .

Statistical Methods for Detecting Functional Divergence of Gene Families

X. Gu, 2012 .

Locus specificity of polymorphic alleles and evolution by a birth-and-death process in mammalian MHC genes.

M. Nei, X. Gu, M Nei, 1999, Molecular biology and evolution.

Evolutionary Origins of Pax6 Control of Crystallin Genes

D. Zheng, X. Gu, A. Cvekl, 2017, Genome biology and evolution.

MATTE: anti-noise module alignment for phenotype-gene-related analysis

X. Gu, Zhan Zhou, Guoxing Cai, 2022 .

Evolutionary and expression profiles of gene families crucial for central nervous system development

Yufeng Wang, Xun Gu, X. Gu, 2002, Inf. Sci..

Comparative study of human mitochondrial proteome reveals extensive protein subcellular relocalization after gene duplications

X. Gu, Xiujuan Wang, D. Lavrov, 2009, BMC Evolutionary Biology.

TreeExp1.0: R Package for Analyzing Expression Evolution Based on RNA-Seq Data.

X. Gu, Zhixi Su, H. Ruan, 2016, Journal of experimental zoology. Part B, Molecular and developmental evolution.

Quantitative genetics of juvenile hormone esterase, juvenile hormone binding and general esterase activity in the cricket Gryllus assimilis

X. Gu, A. Zera, 1996, Heredity.

The Origin and Evolution of Enamel Mineralization Genes

X. Gu, J. Sire, T. Davit-Béal, 2007, Cells Tissues Organs.

dN/dS-H, a New Test to Distinguish Different Selection Modes in Protein Evolution and Cancer Evolution

X. Gu, 2022, Journal of Molecular Evolution.

Mutation-profile-based methods for understanding selection forces in cancer somatic mutations: a comparative analysis.

X. Gu, Zhixi Su, Jingqi Zhou, 2017, Oncotarget.

A Simple Statistical Method for Estimating Type-II (Cluster-Speciﬁc) Functional Divergence of Protein Sequences

X. Gu, 2006 .

A Site-speciﬁc Measure for Rate Difference After Gene Duplication or Speciation

X. Gu, 2001 .

The Age of the Common Ancestor of Eukaryotes and Prokaryotes: Statistical Inferences

X. Gu, 1998 .

Random Penetrance of Mutations Among Individuals: A New Type of Genetic Drift in Molecular Evolution

X. Gu, 2021 .

Expression of the zebrafish CD133/prominin1 genes in cellular proliferation zones in the embryonic central nervous system and sensory organs

X. Gu, J. Essner, Yong Huang, 2010, Developmental dynamics : an official publication of the American Association of Anatomists.

A Simple Evolutionary Model of Genetic Robustness After Gene Duplication

X. Gu, 2022, Journal of Molecular Evolution.

Evolutionary Patterns of Gene Families Generated in the Early Stage of Vertebrates

X. Gu, Yufeng Wang, 2001, Journal of Molecular Evolution.

Genome factor and gene pleiotropy hypotheses in protein evolution

X. Gu, Yanwu Zeng, 2010, Biology Direct.

Effect of site-specific heterogeneous evolution on phylogenetic reconstruction: a simple evaluation.

X. Gu, Zhixi Su, Q. Cheng, 2009, Gene.

Thermal decomposition of two synthetic glycosides by TG, DSC and simultaneous Py-GC-MS analysis

X. Gu, Z. Tan, Lixian Sun, 2007 .

Gene Duplication and Functional Consequences

X. Gu, Zhixi Su, Yangyun Zou, 2012 .

Uncovering genetic regulatory network divergence between duplicate genes using yeast eQTL landscape.

X. Gu, Zhixi Su, Yangyun Zou, 2009, Journal of experimental zoology. Part B, Molecular and developmental evolution.

Identification of conserved gene structures and carboxy-terminal motifs in the Myb gene family of Arabidopsis and Oryza sativa L. ssp. indica

X. Gu, Cizhong Jiang, T. Peterson, 2004, Genome Biology.

Characterization of paralogous protein families in rice

Kan Nobuta, Blake C Meyers, Wei Zhu, 2008, BMC Plant Biology.

SplitTester : software to identify domains responsible for functional divergence in protein family

Xiang Gao, Daniel F. Voytas, Xun Gu, 2005, BMC Bioinformatics.

A Study of the Evolution of Human microRNAs by Their Apparent Repression Effectiveness on Target Genes

X. Gu, Yong Huang, 2011, PloS one.

Evolutionary Patterns of Gene Families Generated in the Early Stage of Vertebrates

X. Gu, Yufeng Wang, 2000, Journal of Molecular Evolution.

Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution

Xun Gu, Yufeng Wang, X. Gu, 2002, Nature Genetics.

In silico analysis indicates a similar gene expression pattern between human brain and testis

X. Gu, L. Yu, S. Zhao, 2004, Cytogenetic and Genome Research.

Functional divergence after gene duplication and sequence-structure relationship: a case study of G-protein alpha subunits.

Ying Zheng, Xun Gu, X. Gu, 2007, Journal of experimental zoology. Part B, Molecular and developmental evolution.

The Impact of DNA Methylation Dynamics on the Mutation Rate During Human Germline Development

X. Gu, Zhixi Su, Jiucun Wang, 2020, G3.

A bootstrap based analysis pipeline for efficient classification of phylogenetically related animal miRNAs

Xun Gu, X. Gu, Yong Huang, 2007, BMC Genomics.

Sequence variation in ZFX introns in human populations.

X. Gu, W. Li, L. Jorde, 1998, Molecular biology and evolution.

Genome-wide and single-base resolution DNA methylomes of the Sea Lamprey (Petromyzon marinus) Reveal Gradual Transition of the Genomic Methylation Pattern in Early Vertebrates

X. Gu, Zhixi Su, Weiming Li, 2015, bioRxiv.

A New Mutation-Profile-Based Method for Understanding the Evolution of Cancer Somatic Mutations

X. Gu, Zhixi Su, Jingqi Zhou, 2015 .

TSNAdb: A Database for Tumor-specific Neoantigens from Immunogenomics Data Analysis

Zhan Zhou, Binbin Zhou, Wenyi Zhao, 2018, Genom. Proteom. Bioinform..

Model parameters of molecular evolution explain genomic correlations

Xun Gu, Wenda Tang, X. Gu, 2017, Briefings Bioinform..

The Evolutionary Panorama of Organ-Specifically Expressed or Repressed Orthologous Genes in Nine Vertebrate Species

X. Gu, Zhixi Su, Yangyun Zou, 2015, PloS one.

Genepleio Software for Effective Estimation of Gene Pleiotropy from Protein Sequences

X. Gu, Yangyun Zou, Yanwu Zeng, 2015, BioMed research international.

Pleiotropy Can Be Effectively Estimated Without Counting Phenotypes Through the Rank of a Genotype–Phenotype Map

X. Gu, 2014, Genetics.

Genetics: Investigation Pleiotropy can be Effectively Estimated without Counting Phenotypes through the Rank of Genotype-Phenotype Map

X. Gu, 2014 .

A note on gene pleiotropy estimation from phylogenetic analysis of protein sequences

X. Gu, Zhixi Su, Wenhai Chen, 2013 .

Hypothesisfactor and gene pleiotropy hypotheses in protein evolution

X. Gu, Yanwu Zeng, 2010 .

Evolutionary Framework for Protein Sequence Evolution and Gene Pleiotropy

X. Gu, 2007, Genetics.

Age distribution patterns of human gene families: divergent for Gene Ontology categories and concordant between different subcellular localizations

X. Gu, Zhixi Su, Yangyun Zou, 2014, Molecular Genetics and Genomics.

Testing the parsimony test of genome duplications: a counterexample.

X. Gu, Wei Huang, 2002, Genome research.

CanDriS: posterior profiling of cancer-driving sites based on two-component evolutionary model

Jeffrey Haltom, Jingcheng Wu, Weijia Su, 2021, Briefings Bioinform..

A New Model of Genetic Variation and Evolution Evaluates Relative Impacts of Background Selections and Selective Sweeps

X. Gu, 2020, bioRxiv.

Statistical Applications in Genetics and Molecular Biology Maximum Likelihood for Genome Phylogeny on Gene Content

Xun Gu, Hongmei Zhang, X. Gu, 2011 .

Comparative Analysis of Codon Usage Patterns Among Mitochondrion, Chloroplast and Nuclear Genes in Triticum aestivum L.

X. Gu, Zuofeng Li, Y. Zhong, 2007 .

A model for the correlation of mutation rate with GC content and the origin of GC-rich isochores

X. Gu, W. Li, W. -. Li, 1994, Journal of Molecular Evolution.

Δ-dN/dS: A New Criteria to Distinguish among Different Selection Modes in Gene Evolution

X. Gu, 2020, bioRxiv.

Early Metazoan Divergence Was About 830 Million Years Ago

X. Gu, 1998, Journal of Molecular Evolution.

How much expression divergence after yeast gene duplication could be explained by regulatory motif evolution?

Xun Gu, Zhongqi Zhang, X. Gu, 2004, Trends in genetics : TIG.

Simultaneous expansions of microRNAs and protein-coding genes by gene/genome duplications in early vertebrates.

X. Gu, Zhixi Su, Yong Huang, 2009, Journal of experimental zoology. Part B, Molecular and developmental evolution.

Integrative Analysis of Somatic Mutations in Non-coding Regions Altering RNA Secondary Structures in Cancer Genomes

Melissa J. Davis, X. Gu, Leming Shi, 2019, Scientific Reports.

Mathematical Modeling for Functional Divergence after Gene Duplication

Xun Gu, X. Gu, 2001, J. Comput. Biol..

Olfactomedin domain-containing proteins: evolution, functional divergence, expression patterns and damaging SNPs

X. Gu, Zhixi Su, Ake Liu, 2019, Molecular Genetics and Genomics.

Identification and characterization of tyrosine kinases in anole lizard indicate the conserved tyrosine kinase repertoire in vertebrates

X. Gu, Funan He, Ake Liu, 2017, Molecular Genetics and Genomics.

Natural history and functional divergence of protein tyrosine kinases.

X. Gu, J. Gu, Jianying Gu, 2003, Gene.

DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family

Xun Gu, Kent Vander Velden, X. Gu, 2002, Bioinform..

Identification of essential amino acid changes in paired domain evolution using a novel combination of evolutionary analysis and in vitro and in vivo studies.

X. Gu, Wen-Hsiung Li, P. Callaerts, 2002, Molecular biology and evolution.

Effect of Duplicate Genes on Mouse Genetic Robustness: An Update

X. Gu, Zhixi Su, Junqiang Wang, 2014, BioMed research international.

Functional Divergence in Protein (Family) Sequence Evolution

Xun Gu, X. Gu, 2004, Genetica.

Functional divergence in protein (family) sequence evolution.

Xun Gu, X. Gu, 2003 .

Predicting functional divergence in protein evolution by site-specific rate shifts.

Xun Gu, Steven A Benner, Eric A Gaucher, 2002, Trends in biochemical sciences.

Functional divergence in the caspase gene family and altered functional constraints: statistical analysis and prediction.

X. Gu, X Gu, Y Wang, 2001, Genetics.

GeneContent: software for whole-genome phylogenetic analysis

Hongmei Zhang, Wei Huang, Xun Gu, 2005, Bioinform..

Tissue-Driven Hypothesis of Transcriptome Evolution: An Update

X. Gu, Jeffrey Haltom, H. T. Hallmark, 2016, bioRxiv.

Phylogenetic position of the enigmatic genus Psilorhynchus (Ostariophysi: Cypriniformes): evidence from the mitochondrial genome.

X. Gu, Wei‐Jen Chen, R. Mayden, 2008, Molecular phylogenetics and evolution.

Evolutionary Analysis for Functional Divergence of Jak Protein Kinase Domains and Tissue-Specific Genes

X. Gu, J. Gu, Yufeng Wang, 2002, Journal of Molecular Evolution.

Diversity and evolution of T-cell receptor variable region genes in mammals and birds

M. Nei, X. Gu, C. Su, 1999, Immunogenetics.

Random Penetrance of Mutations Among Individuals: A New Type of Genetic Drift in Molecular Evolution

X. Gu, 2021, Phenomics.

Identification of copy number variation hotspots in human populations.

Li Jin, Wenqing Fu, Xun Gu, 2010, American journal of human genetics.

Sex Differences in Mutation Rate in Higher Primates Estimated from AMG Intron Sequences

Wei Huang, Xun Gu, D. Hewett‐Emmett, 1997, Journal of Molecular Evolution.

Distinguish between Duplication of Essential Genes and Duplication of Dispensable Genes

X. Gu, 2020, bioRxiv.

A Simple Statistical Method for Estimating Type-II ( Cluster-Specific ) Functional Divergence of Protein Sequences

Xun Gu, X. Gu, 2006 .

Paralog-divergent Features May Help Reduce Off-target Effects of Drugs: Hints from Glucagon Subfamily Analysis

Xun Gu, Zhixi Su, Jingqi Zhou, 2017, Genom. Proteom. Bioinform..

Asymmetric evolution of human transcription factor regulatory networks.

X. Gu, Zhixi Su, Jingqi Zhou, 2014, Molecular biology and evolution.

Evolutionary Analysis for Functional Divergence of the Toll-Like Receptor Gene Family and Altered Functional Constraints

X. Gu, J. Gu, S. Lamont, 2007, Journal of Molecular Evolution.

Evolutionary analysis of functional divergence in TGF- signaling pathway

Jianying Gu, Xun Gu, X. Gu, 2002, Inf. Sci..

A site-specific measure for rate difference after gene duplication or speciation.

X. Gu, 2001, Molecular biology and evolution.

Dynamic Behaviors of Expression Compensation between Duplicate Genes

X. Gu, 2020, bioRxiv.

Statistical models for studying DNA sequence evolution

Xun Gu, X. Gu, Wen-Hsiung Li, 1995 .

Evolutionary Dynamics of MERS-CoV: Potential Recombination, Positive Selection and Transmission

X. Gu, Libing Shen, Zhao Zhang, 2016, Scientific Reports.

Assembly of 97 Novel Bacterial Genomes in the Microbial Community Affiliated with Polyvinyl Alcohol in Soil of Northern China

X. Gu, Hui Li, Jiaxing Liu, 2022, BioMed research international.

Revisit on the evolutionary relationship between alternative splicing and gene duplication.

X. Gu, Zhixi Su, 2012, Gene.

Brownian model of transcriptome evolution and phylogenetic network visualization between tissues.

X. Gu, Zhixi Su, Yangyun Zou, 2017, Molecular phylogenetics and evolution.

Understanding tissue expression evolution: from expression phylogeny to phylogenetic network

Xun Gu, X. Gu, 2016, Briefings Bioinform..

Tissue-driven hypothesis of genomic evolution and sequence-expression correlations

X. Gu, Zhixi Su, 2007, Proceedings of the National Academy of Sciences.

Toward a Realistic Model for Gene Network Evolution

Tian Xia, Wenhai Chen, Xun Gu, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

A Greedy Algorithm for Optimal Recombination

Xun Gu, Shiquan Wu, X. Gu, 2001, COCOON.

A Simple Evolutionary Model for Genome Phylogeny Based on Gene Content

X. Gu, 2000 .

Tracing Evolutionary Ages of Cancer-Driving Sites by Cancer Somatic Mutations

X. Gu, Jingwen Yang, Zhan Zou, 2020, bioRxiv.

Current Bacterial Gene Encoding Capsule Biosynthesis Protein CapI Contains Nucleotides Derived from Exonization

X. Gu, Zhixi Su, Q. Yao, 2016, Evolutionary bioinformatics online.

Human Transcriptome Evolution

X. Gu, Yong Huang, 2008 .

A preliminary analysis of gene pleiotropy estimated from protein sequences.

X. Gu, Zhixi Su, Yanwu Zeng, 2010, Journal of experimental zoology. Part B, Molecular and developmental evolution.

An evolutionary model for the origin of modularity in a complex gene network.

Xun Gu, X. Gu, 2009, Journal of experimental zoology. Part B, Molecular and developmental evolution.

Evolution of RNases in leaf monkeys: being parallel gene duplications or parallel gene conversions is a problem of molecular phylogeny.

X. Gu, Zhixi Su, Lin Xu, 2009, Molecular phylogenetics and evolution.

Stabilizing selection of protein function and distribution of selection coefficient among sites

X. Gu, 2007, Genetica.

Comparative Transcriptome Analyses Reveal the Role of Conserved Function in Electric Organ Convergence Across Electric Fishes

X. Gu, Zhixi Su, Jingqi Zhou, 2019, Front. Genet..

TSNAD: an integrated software for cancer somatic mutation and tumour-specific neoantigen detection

Xun Gu, Xingzheng Lyu, Jingcheng Wu, 2017, Royal Society Open Science.

Human evolution and human‐influenced evolution of organisms in changing environments

X. Gu, Ji Yang, B. Lu, 2013 .

Neurotransmitter inactivation is important for the origin of nerve system in animal early evolution: A suggestion from genomic comparison

X. Gu, Xiuting Gu, Qi Wu, 2006, Progress in Neurobiology.

A chromosome 15 quantitative trait locus controls levels of radiation-induced jejunal crypt cell apoptosis in mice.

X. Gu, K. Mason, M. Weil, 2001, Genomics.

Statistical detection of differentially expressed genes based on RNA-seq: from biological to phylogenetic replicates

Xun Gu, X. Gu, 2016, Briefings Bioinform..

Tissue-driven Hypothesis with Gene Ontology (GO) Analysis

X. Gu, Zhixi Su, Yong Huang, 2007, Annals of Biomedical Engineering.

Major: Bioinformatics and Computational Biology

Vasant G Honavar, X. Gu, D. Dobbs, 2002 .

Ancestral transcriptome inference based on RNA-Seq and ChIP-seq data.

X. Gu, Zhixi Su, Yangyun Zou, 2020, Methods.

Statistical Methods for Testing Functional Divergence after Gene Duplication

X. Gu, 2022 .

Characterization of juvenile hormone esterase from genetically-determined wing morphs of the cricket, Gryllus rubens

X. Gu, A. Zera, Michelle Zeisset, 1992 .

Developmental profiles and characteristics of hemolymph juvenile hormone esterase, general esterase and juvenile hormone binding in the cricket, Gryllus assimilis

X. Gu, A. Zera, 1994 .

Identification of Functional Mutations in GATA4 in Patients with Congenital Heart Disease

Shuhua Xu, X. Gu, Y. An, 2013, PloS one.

What is the main mechanism of the origin of phosphorylation sites? Still an open question

X. Gu, Zhixi Su, Yu-Yu Wang, 2017 .

Predicting the Proportion of Essential Genes in Mouse Duplicates Based on Biased Mouse Knockout Genes

X. Gu, Zhixi Su, 2008, Journal of Molecular Evolution.

Evolutionary Analysis for Developmental Profiles of Gene Family Expression in Central Nervous System

Yufeng Wang, Xun Gu, X. Gu, 2002, Joint Conference on Information Sciences.

Identification of trunk mutations in gastric carcinoma: a case study

X. Gu, Yuan Shi, Yufeng Wang, 2017, BMC Medical Genomics.

Time squared: repeated measures on phylogenies.

M. Suchard, X. Gu, R. Weiss, 2006, Molecular biology and evolution.

Network motif comparison rationalizes Sec1/Munc18-SNARE regulation mechanism in exocytosis

Tian Xia, Julie A. Dickerson, Xun Gu, 2012, BMC Systems Biology.

Differences in duplication age distributions between human GPCRs and their downstream genes from a network prospective

Ying Zheng, Xun Gu, Zhixi Su, 2009, BMC Genomics.

Predicting binding sites of hydrolase-inhibitor complexes by combining several methods

Vasant Honavar, Andrzej Kloczkowski, Robert L. Jernigan, 2004, BMC Bioinformatics.

Identification of copy number variation hotspots in human populations.

Li Jin, X. Gu, Wenqing Fu, 2010, American journal of human genetics.

TreeExp2: An Integrated Framework for Phylogenetic Transcriptome Analysis

X. Gu, H. Ruan, Wenjie Xu, 2019, Genome biology and evolution.

Mutation-profile-based methods for understanding selection forces in cancer somatic mutations: a comparative analysis

X. Gu, Zhixi Su, Jingqi Zhou, 2015, bioRxiv.

A panel of radiation hybrids for human chromosome 8.

X. Gu, M. Wagner, D. Wells, 1994, Genomics.

Estimating the strength of expression conservation from high throughput RNA-seq data

Xun Gu, Hang Ruan, Jingwen Yang, 2019, Bioinform..

Models of DNA sequence evolution

X. Gu, 1996 .

Expression of the zebrafish CD133/prominin1 genes in cellular proliferation zones in the embryonic central nervous system and sensory organs

X. Gu, J. Essner, Yong Huang, 2010, Developmental dynamics : an official publication of the American Association of Anatomists.

An evolutionary model for the origin of modularity in a complex gene network.

X. Gu, 2009, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution.

Genome Distance and Phylogenetic Inference Accommodating Gene Duplication, Loss and New Gene Input.

X. Gu, 2023, Molecular phylogenetics and evolution.

Simultaneous expansions of microRNAs and protein-coding genes by gene/genome duplications in early vertebrates.

X. Gu, Zhixi Su, Yong Huang, 2009, Journal of experimental zoology. Part B, Molecular and developmental evolution.

Understanding tissue expression evolution: from expression phylogeny to phylogenetic network

X. Gu, 2016, Briefings Bioinform..

Predicting binding sites of hydrolase-inhibitor complexes by combining several methods

Vasant G Honavar, X. Gu, Changhui Yan, 2004, BMC Bioinformatics.

Phylogenomic Distance Method for Analyzing Transcriptome Evolution Based on RNA-seq Data

X. Gu, Wei Huang, Zhixi Su, 2013, Genome biology and evolution.

Gene Network: Model, Dynamics and Simulation

Xun Gu, Shiquan Wu, X. Gu, 2005, COCOON.

Predicting Type-I (Rate-Shift) Functional Divergence of Protein Sequences and Applications in Functional Genomics

Kent Vander Velden, X. Gu, Yufeng Wang, 2006 .