Feng-Chi Chen

发表

Extent of gene duplication in the genomes of Drosophila, nematode, and yeast.

Z. Gu, AndreR.O. Cavalcanti, Feng-Chi Chen, 2002, Molecular biology and evolution.

Scanning for the Signatures of Positive Selection for Human-Specific Insertions and Deletions

Feng-Chi Chen, Chun-Hsi Chen, Trees-Juen Chuang, 2009, Genome biology and evolution.

Human-specific insertions and deletions inferred from mammalian genome sequences.

Feng-Chi Chen, Wen-Hsiung Li, Trees-Juen Chuang, 2006, Genome research.

NF-κB–driven suppression of FOXO3a contributes to EGFR mutation-independent gefitinib resistance

Feng-Chi Chen, Kang-Yun Lee, Ching-Feng Chiu, 2016, Proceedings of the National Academy of Sciences.

Alternative RNA Structure-Coupled Gene Regulations in Tumorigenesis

Feng-Chi Chen, 2014, International journal of molecular sciences.

The plausible reason why the length of 5' untranslated region is unrelated to organismal complexity

Feng-Chi Chen, Chun-Hsi Chen, Chia-Lin Pan, 2011, BMC Research Notes.

Assessing determinants of exonic evolutionary rates in mammals.

Andrew Ying-Fei Chang, Feng-Chi Chen, Ben-Yang Liao, 2012, Molecular biology and evolution.

Exploring the selective constraint on the sizes of insertions and deletions in 5' untranslated regions in mammals

Feng-Chi Chen, Chun-Hsi Chen, Ben-Yang Liao, 2011, BMC Evolutionary Biology.

Position-dependent correlations between DNA methylation and the evolutionary rates of mammalian coding exons

Feng-Chi Chen, Trees-Juen Chuang, Yen-Zho Chen, 2012, Proceedings of the National Academy of Sciences.

NMD Classifier: A reliable and systematic classification tool for nonsense-mediated decay events

Feng-Chi Chen, Min-Kung Hsu, Hsuan-Yu Lin, 2017, PloS one.

An Experimentally Validated Genome-Scale Metabolic Reconstruction of Klebsiella pneumoniae MGH 78578, iYL1228

Bernhard O. Palsson, Shih-Feng Tsai, Chao A. Hsiung, 2011, Journal of bacteriology.

Plant Gene and Alternatively Spliced Variant Annotator. A Plant Genome Annotation Pipeline for Rice Gene and Alternatively Spliced Variant Identification with Cross-Species Expressed Sequence Tag Conservation from Seven Plant Species1[W][OA]

Feng-Chi Chen, Trees-Juen Chuang, S. Chaw, 2007, Plant Physiology.

Selective Constraint on Human Pre-mRNA Splicing by Protein Structural Properties

Feng-Chi Chen, Trees-Juen Chuang, A. D. de Brevern, 2012, Genome biology and evolution.

Pros and Cons of the Tuberculosis Drugome Approach – An Empirical Analysis

Feng-Chi Chen, C. Hsiung, Yu-Chieh Liao, 2014, PloS one.

DNA Methylation is Associated with an Increased Level of Conservation at Nondegenerate Nucleotides in Mammals

Feng-Chi Chen, Trees-Juen Chuang, 2013, Molecular biology and evolution.

Selective Constraint on the Upstream Open Reading Frames That Overlap with Coding Sequences in Animals

Feng-Chi Chen, Min-Kung Hsu, 2012, PloS one.

Alternatively and constitutively spliced exons are subject to different evolutionary forces.

Feng-Chi Chen, Wen-Hsiung Li, Trees-Juen Chuang, 2006, Molecular biology and evolution.

comparisons inferred from cross-species transcript and processed pseudogene Identification and analysis of ancestral hominoid transcriptome Material

Feng-Chi Chen, Trees-Juen Chuang, Yao-Ting Huang, 2008 .

Functional divergence and convergence between the transcript network and gene network in lung adenocarcinoma

Feng-Chi Chen, Min-Kung Hsu, C. Pan, 2016, OncoTargets and therapy.

Independent effects of alternative splicing and structural constraint on the evolution of mammalian coding exons.

Feng-Chi Chen, Hsuan-Yu Lin, C. Pan, 2012, Molecular biology and evolution.

Gene Family Size Conservation Is a Good Indicator of Evolutionary Rates

Feng-Chi Chen, Wen-Hsiung Li, Trees-Juen Chuang, 2010, Molecular biology and evolution.

The evolutionary landscape of the Mycobacterium tuberculosis genome.

Feng-Chi Chen, Tai-Chun Wang, 2013, Gene.

PGAA: a plant genome annotation pipeline for rice gene and alternatively spliced variant identification with cross-species EST conservation from seven plant species

Feng-Chi Chen, Trees-Juen Chuang, S. Chaw, 2007 .

Patent trend and competitive analysis of cancer immunotherapy in the United States

Feng-Chi Chen, C. Pan, 2017, Human vaccines & immunotherapeutics.

Determinants of Exon-Level Evolutionary Rates in Arabidopsis Species

Feng-Chi Chen, G. Wu, 2012, Evolutionary bioinformatics online.

Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat

Trees-Juen Chuang, Feng-Chi Chen, Chuang-Jong Chen, 2006, BMC Bioinformatics.

Triple-layer dissection of the lung adenocarcinoma transcriptome – regulation at the gene, transcript, and exon levels

Feng-Chi Chen, C. Hsieh, Ching-Chia Cheng, 2015, Oncotarget.

LDGIdb: a database of gene interactions inferred from long-range strong linkage disequilibrium between pairs of SNPs

Feng-Chi Chen, Trees-Juen Chuang, Yao-Ting Huang, 2012, BMC Research Notes.

Changes in transcriptional orientation are associated with increases in evolutionary rates of enterobacterial genes

Chieh Hua Lin, Chao A. Hsiung, Feng-Chi Chen, 2011, BMC Bioinformatics.

Larger genetic differences within africans than between Africans and Eurasians.

S. Shyue, Feng-Chi Chen, Wen-Hsiung Li, 2002, Genetics.

Identification and analysis of ancestral hominoid transcriptome inferred from cross-species transcript and processed pseudogene comparisons.

Trees-Juen Chuang, Feng-Chi Chen, Feng-Chi Chen, 2008, Genome research.

Nucleotide Sequence Divergence between Humans and Chimpanzees

Feng-Chi Chen, Trees-Juen Chuang, 2008 .

Phosphorylated and nonphosphorylated serine and threonine residues evolve at different rates in mammals.

Feng-Chi Chen, Feng-Chi Chen, Wen-Hsiung Li, 2010, Molecular biology and evolution.

The evolution of the coding exome of the Arabidopsis species - the influences of DNA methylation, relative exon position, and exon length

Feng-Chi Chen, Trees-Juen Chuang, Min-Kung Hsu, 2014, BMC Evolutionary Biology.

Functional Implications of RNA Splicing for Human Long Intergenic Noncoding RNAs

Feng-Chi Chen, Hsuan-Yu Lin, C. Pan, 2014, Evolutionary bioinformatics online.

The effects of multiple features of alternatively spliced exons on the KA/KS ratio test

Trees-Juen Chuang, Feng-Chi Chen, Feng-Chi Chen, 2006, BMC Bioinformatics.

Different alternative splicing patterns are subject to opposite selection pressure for protein reading frame preservation

Feng-Chi Chen, Trees-Juen Chuang, 2007, BMC Evolutionary Biology.

Are all of the human exons alternatively spliced?

Feng-Chi Chen, Feng-Chi Chen, 2014, Briefings Bioinform..

The Length Evolution of 5' Untranslated Regions - The Stochastic Model Revisited

Feng-Chi Chen, Hsuan-Yu Lin, Chun-Hsi Chen, 2011, 2011 IEEE 11th International Conference on Bioinformatics and Bioengineering.

Opposite evolutionary effects between different alternative splicing patterns.

Trees-Juen Chuang, Feng-Chi Chen, Sheng-Shun Wang, 2007, Molecular biology and evolution.

GEMSiRV: a software platform for GEnome-scale metabolic model simulation, reconstruction and visualization

Feng-Chi Chen, Ming-Hsin Tsai, Yu-Chieh Liao, 2012, Bioinform..

CNVVdb: a database of copy number variations across vertebrate genomes

Trees-Juen Chuang, Feng-Chi Chen, Yen-Zho Chen, 2009, Bioinform..

A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2

Kathleen Marchal, Ronan M. T. Fleming, Neil Swainston, 2011, BMC Systems Biology.

The genomic features that affect the lengths of 5’ untranslated regions in multicellular eukaryotes

Feng-Chi Chen, Hsuan-Yu Lin, Chun-Hsi Chen, 2011, BMC Bioinformatics.

MrBac: A web server for draft metabolic network reconstructions for bacteria

Feng-Chi Chen, Yu-Chieh Liao, Feng-Chi Chen, 2011, Bioengineered bugs.

Contrasting substitution patterns between HA proteins of avian and human influenza viruses: Implication for monitoring human influenza epidemics.

Feng-Chi Chen, C. Hsiung, Yu-Chieh Liao, 2010, Vaccine.

CAPIH: A Web interface for comparative analyses and visualization of host-HIV protein-protein interactions

Trees-Juen Chuang, Fan-Kai Lin, Feng-Chi Chen, 2009, BMC Microbiology.

Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees.

Feng-Chi Chen, Wen-Hsiung Li, W. Li, 2001, American journal of human genetics.

Draft Genome Sequence of NDM-1-Producing Klebsiella pneumoniae Clinical Isolate 303K

Feng-Chi Chen, C. Hsiung, Hsin-Hung Lin, 2013, Genome Announcements.

Functional Implications of RNA Splicing for Human Long Intergenic Noncoding RNAs

Feng-Chi Chen, Hsuan-Yu Lin, C. Pan, 2014, Evolutionary bioinformatics online.

The evolutionary landscape of the Mycobacterium tuberculosis genome.

Feng-Chi Chen, Tai-Chun Wang, 2012, Gene.

NF-κB–driven suppression of FOXO3a contributes to EGFR mutation-independent gefitinib resistance

Feng-Chi Chen, Kang-Yun Lee, Ching-Feng Chiu, 2016, Proceedings of the National Academy of Sciences.

Bioinformatics Applications Note Estviewer: a Web Interface for Visualizing Mouse, Rat, Cattle, Pig and Chicken Conserved Ests in Human Genes and Human Alternatively Spliced Variants

Feng-Chi Chen, Trees-Juen Chuang, 2022 .

A comparative method for identification of gene structures and alternatively spliced variants

Trees-Juen Chuang, Feng-Chi Chen, Meng-Yuan Chou, 2004, Bioinform..

Oncotargets and Therapy Dovepress Dovepress Non-small-cell Lung Cancer Cells Combat Epidermal Growth Factor Receptor Tyrosine Kinase Inhibition through Immediate Adhesion-related Responses

Feng-Chi Chen, Min-Kung Hsu, J. T. Hsu, 2022 .