J. VanderGheynst

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A life cycle assessment of biosolarization as a valorization pathway for tomato pomace utilization in California

T. Oldfield, N. Holden, Y. Achmon, 2017 .

The impact of elevated CO2 concentration on the quality of algal starch as a potential biofuel feedstock

J. VanderGheynst, Orn-u-ma Tanadul, D. M. Beckles, 2014, Biotechnology and bioengineering.

Title The impact of elevated CO 2 concentration on the quality of algal starch as a potential biofuel feedstock Permalink

J. VanderGheynst, D. M. Beckles, A. Powell, 2014 .

MS-DIAL: Data Independent MS/MS Deconvolution for Comprehensive Metabolome Analysis

Masanori Arita, O. Fiehn, J. VanderGheynst, 2015, Nature Methods.

Cofactor symbiosis for enhanced algal growth, biofuel production, and wastewater treatment

O. Fiehn, J. VanderGheynst, T. Kind, 2016 .

Effects of Escherichia coli on Mixotrophic Growth of Chlorella minutissima and Production of Biofuel Precursors

J. VanderGheynst, Brendan T. Higgins, 2014, PloS one.

The impact of cell wall carbohydrate composition on the chitosan flocculation of Chlorella

Yu-Shen Cheng, Yi Zheng, Jean S. VanderGheynst, 2011 .

Co‐culturing Chlorella minutissima with Escherichia coli can increase neutral lipid production and improve biodiesel quality

J. VanderGheynst, J. Labavitch, Brendan T. Higgins, 2015, Biotechnology and bioengineering.

Xylanase and cellulase production by Acidothermus cellulolyticus grown on switchgrass in solid-state fermentation

J. VanderGheynst, F. Rezaei, Lawrence D. Joh, 2011 .

Bacillus coagulans tolerance to 1‐ethyl‐3‐methylimidazolium‐based ionic liquids in aqueous and solid‐state thermophilic culture

J. VanderGheynst, C. Simmons, B. Simmons, 2014, Biotechnology progress.

Assessment of tomato and wine processing solid wastes as soil amendments for biosolarization.

Y. Achmon, J. VanderGheynst, James J Stapleton, 2016, Waste management.

Targeted Discovery of Glycoside Hydrolases from a Switchgrass-Adapted Compost Community

P. D’haeseleer, J. VanderGheynst, B. Simmons, 2010, PloS one.

Discovery of Microorganisms and Enzymes Involved in High-Solids Decomposition of Rice Straw Using Metagenomic Analyses

P. D’haeseleer, J. VanderGheynst, C. Simmons, 2013, PloS one.

Cultivation of black soldier fly larvae on almond byproducts: impacts of aeration and moisture on larvae growth and composition

J. VanderGheynst, D. Niemeier, M. Pitesky, 2018, Journal of the science of food and agriculture.

Almond by‐product composition impacts the rearing of black soldier fly larvae and quality of the spent substrate as a soil amendment

J. VanderGheynst, J. Fernández-Bayo, L. Palma, 2020, Journal of the science of food and agriculture.

The effect of the microalgae-bacteria microbiome on wastewater treatment and biomass production

J. VanderGheynst, J. Fernández-Bayo, Matthew B. Paddock, 2019, Applied Microbiology and Biotechnology.

Botryosphaeria-related dieback and control investigated in noncoastal California grapevines

J. VanderGheynst, L. Epstein, K. Sukhwinder, 2008 .

Ionic liquid-tolerant microorganisms and microbial communities for lignocellulose conversion to bioproducts

Blake A. Simmons, Steven W. Singer, Michael P. Thelen, 2016, Applied Microbiology and Biotechnology.

Impact of organic waste composition on life cycle energy production, global warming and Water use for treatment by anaerobic digestion followed by composting

J. VanderGheynst, C. Simmons, Ramin Yazdani, 2018, Resources, Conservation and Recycling.

The kinetics of Lagenidium giganteum growth in liquid and solid cultures

J. VanderGheynst, T. Rumsey, B. A. May, 2006, Journal of applied microbiology.

Informatics for improved algal taxonomic classification and research: A case study of UTEX 2341

W. R. Wikoff, O. Fiehn, J. VanderGheynst, 2015 .

Microplate assay for quantitation of neutral lipids in extracts from microalgae.

J. VanderGheynst, J. Labavitch, Brendan T. Higgins, 2014, Analytical biochemistry.

Development of models for predicting carbon mineralization and associated phytotoxicity in compost-amended soil.

J. VanderGheynst, T. Rumsey, Danielle N. Aslam, 2008, Bioresource technology.

Comparison of several maturity indicators for estimating phytotoxicity in compost-amended soil.

W. Horwath, J. VanderGheynst, Danielle N. Aslam, 2008, Waste management.

Estimating Electrical Conductivity of Compost Extracts At Different Extraction Ratios

Todd M. Dooley, J. VanderGheynst, S. Pettygrove, 2004 .

Algal photosynthetic aeration increases the capacity of bacteria to degrade organics in wastewater

J. VanderGheynst, Brendan T. Higgins, Matthew B. Paddock, 2020, Biotechnology and bioengineering.

Rapid Quantitative Analysis of Lipids Using a Colorimetric Method in a Microplate Format

J. VanderGheynst, Yu-Shen Cheng, Yi Zheng, 2010, Lipids.

Effects of pretreatment conditions and post–pretreatment washing on ethanol production from dilute acid pretreated rice straw

J. VanderGheynst, Yi Zheng, Christopher M. Lee, 2015 .

Effects of phenolic monomers on growth of Acidothermus cellulolyticus

J. VanderGheynst, R. Barabote, F. Rezaei, 2011, Biotechnology progress.

Bioenergy feedstock‐specific enrichment of microbial populations during high‐solids thermophilic deconstruction

J. VanderGheynst, B. Simmons, P. Hugenholtz, 2011, Biotechnology and bioengineering.

Response surface studies that elucidate the role of infiltration conditions on Agrobacterium tumefaciens-mediated transient transgene expression in harvested switchgrass (Panicum virgatum)

J. VanderGheynst, C. Simmons, Hongyun Guo, 2007 .

Characterization of digestate microbial community structure following thermophilic anaerobic digestion with varying levels of green and food wastes.

J. VanderGheynst, C. Simmons, J. Fernández-Bayo, 2020, Journal of industrial microbiology & biotechnology.

Managing compost stability and amendment to soil to enhance soil heating during soil solarization.

K. Perano, J. VanderGheynst, James J Stapleton, 2013, Waste management.

Factorial Experimental Designs for Enhancement of Concurrent Poly(Hydroxyalkanoate) Production and Brewery Wastewater Treatment

Donald E. Thompson, J. VanderGheynst, F. Loge, 2011, Water environment research : a research publication of the Water Environment Federation.

Enrichment, isolation and characterization of fungi tolerant to 1‐ethyl‐3‐methylimidazolium acetate

J. VanderGheynst, B. Simmons, S. Singer, 2011, Journal of applied microbiology.

Improving the efficiency of enzyme utilization for sugar beet pulp hydrolysis

J. VanderGheynst, B. Jenkins, Ruihong Zhang, 2012, Bioprocess and Biosystems Engineering.

Soil Application of Almond Residue Biomass Following Black Soldier Fly Larvae Cultivation

J. VanderGheynst, C. Simmons, J. Fernández-Bayo, 2021, Frontiers in Sustainable Food Systems.

Effects of ensilage on storage and enzymatic degradability of sugar beet pulp.

J. VanderGheynst, B. Jenkins, Ruihong Zhang, 2011, Bioresource technology.

The initial soil microbiota impacts the potential for lignocellulose degradation during soil solarization

Y. Achmon, J. VanderGheynst, James J Stapleton, 2019, Journal of applied microbiology.

Nitrogen amendment of green waste impacts microbial community, enzyme secretion and potential for lignocellulose decomposition

J. VanderGheynst, C. Simmons, B. Simmons, 2017 .

Development and characterization of a thermophilic, lignin degrading microbiota

J. VanderGheynst, C. Simmons, B. Simmons, 2017 .

Effect of management of organic wastes on inactivation of Brassica nigra and Fusarium oxysporum f.sp. lactucae using soil biosolarization.

Y. Achmon, Ruth M. Dahlquist-Willard, J. VanderGheynst, 2018, Pest management science.

Effect of gas velocity and influent concentration on biofiltration of gasoline off-gas from soil vapor extraction.

J. VanderGheynst, Joon-Seok Park, W. Namkoong, 2004, Chemosphere.

The Critical Moisture Range for Rapid Microbial Decomposition of Rice Straw During Storage

J. VanderGheynst, B. Jenkins, A. P. Reddy, 2009 .

Compost induces the accumulation of biopesticidal organic acids during soil biosolarization

Y. Achmon, J. VanderGheynst, James J Stapleton, 2019, Resources, Conservation and Recycling.

Effect of inoculum source on the enrichment of microbial communities on two lignocellulosic bioenergy crops under thermophilic and high‐solids conditions

J. VanderGheynst, C. Simmons, B. Simmons, 2014, Journal of applied microbiology.

Characterization of bacterial communities in solarized soil amended with lignocellulosic organic matter

J. VanderGheynst, James J Stapleton, C. Simmons, 2014 .

Comparison of soil biosolarization with mesophilic and thermophilic solid digestates on soil microbial quantity and diversity

Y. Achmon, Ruth M. Dahlquist-Willard, J. VanderGheynst, 2017 .

Ionic Liquids Impact the Bioenergy Feedstock-Degrading Microbiome and Transcription of Enzymes Relevant to Polysaccharide Hydrolysis

J. VanderGheynst, B. Simmons, Yu-Wei Wu, 2016, mSystems.

Thousands of small, novel genes predicted in global phage genomes.

Vincent J. Denef, Eoin L. Brodie, William F. Whitman, 2022, Cell reports.

The role of organic matter amendment level on soil heating, organic acid accumulation, and development of bacterial communities in solarized soil

J. VanderGheynst, James J Stapleton, C. Simmons, 2016 .

Expansion of the global RNA virome reveals diverse clades of bacteriophages

Vincent J. Denef, Natalia N. Ivanova, David A. C. Beck, 2022, Cell.

Managing high fiber food waste for the cultivation of black soldier fly larvae

J. VanderGheynst, D. Niemeier, M. Pitesky, 2019, NPJ science of food.

Development and validation of a Weibull–Arrhenius model to predict thermal inactivation of black mustard (Brassica nigra) seeds under fluctuating temperature regimens

Ruth M. Dahlquist-Willard, J. VanderGheynst, James J Stapleton, 2016 .

Leaf-Encapsulated Vaccines: Agroinfiltration and Transient Expression of the Antigen Staphylococcal Endotoxin B in Radish Leaves

J. VanderGheynst, C. Simmons, Chun-Ming Huang, 2018, Journal of Immunological Research.

Production of Botrytis cinerea for potential introduction into a vineyard.

J. VanderGheynst, D. Block, N. Sabeh, 2004, Bioresource technology.

Attachment of Agrobacterium tumefaciens to leaf tissue in response to infiltration conditions

J. VanderGheynst, C. Simmons, N. Nitin, 2014, Biotechnology progress.

Water-in-oil emulsions that improve the storage and delivery of the biolarvacide Lagenidium giganteum

J. VanderGheynst, H. Scher, Hongyun Guo, 2007, BioControl.

Evaluating Extraction and Storage of a Recombinant Protein Produced in Agroinfiltrated Lettuce

J. VanderGheynst, K. McDonald, Lawrence D. Joh, 2006, Biotechnology progress.

A model of Agrobacterium tumefaciens vacuum infiltration into harvested leaf tissue and subsequent in planta transgene transient expression.

J. VanderGheynst, C. Simmons, S. Upadhyaya, 2009, Biotechnology and bioengineering.

Solid-liquid extraction of alkali metals and organic compounds by leaching of food industry residues.

J. VanderGheynst, B. Jenkins, Ruihong Zhang, 2010, Bioresource technology.

Performance of green waste biocovers for enhancing methane oxidation.

J. VanderGheynst, Ramin Yazdani, J. Chanton, 2015, Waste management.

Transient co-expression of post-transcriptional gene silencing suppressors and β-glucuronidase in harvested lettuce leaf tissue does not improve recombinant protein accumulation in planta

J. VanderGheynst, C. Simmons, 2007, Biotechnology Letters.

High-level transient expression of recombinant protein in lettuce.

J. VanderGheynst, T. Wróblewski, Lawrence D. Joh, 2005, Biotechnology and bioengineering.

Ensilage and bioconversion of grape pomace into fuel ethanol.

J. VanderGheynst, C. Simmons, B. Jenkins, 2012, Journal of agricultural and food chemistry.

Selection of Conditions for Cellulase and Xylanase Extraction from Switchgrass Colonized by Acidothermus cellulolyticus

Farzaneh Rezaei, Hiroyuki Kashima, Jean S. VanderGheynst, 2011, Applied biochemistry and biotechnology.

Dilute acid pretreatment and fermentation of sugar beet pulp to ethanol

Bryan M. Jenkins, Ruihong Zhang, Yi Zheng, 2013 .

Integrating sugar beet pulp storage, hydrolysis and fermentation for fuel ethanol production

Todd M. Dooley, Yu-Shen Cheng, Bryan M. Jenkins, 2012 .

The effect of the microalgae-bacteria microbiome on wastewater treatment and biomass production

J. VanderGheynst, J. Fernández-Bayo, Matthew B. Paddock, 2019, Applied Microbiology and Biotechnology.

Algal–bacterial synergy in treatment of winery wastewater

O. Fiehn, J. VanderGheynst, Brendan T. Higgins, 2018, npj Clean Water.

Predicting Phytotoxicity of Compost-Amended Soil from Compost Stability Measurements

J. VanderGheynst, Danielle N. Aslam, 2008 .

Biosolarization restructures soil bacterial communities and decreases parasitic nematode populations

Y. Achmon, J. VanderGheynst, James J Stapleton, 2022, Applied Soil Ecology.

Assessment of Two Solid Anaerobic Digestate Soil Amendments for Effects on Soil Quality and Biosolarization Efficacy.

Y. Achmon, Ruth M. Dahlquist-Willard, J. VanderGheynst, 2017, Journal of agricultural and food chemistry.

Chemical Contents on Dry Weight Basis of the Soil and the Thermophilic ( TD ) and Mesophilic ( MD ) Digestates

Y. Achmon, Ruth M. Dahlquist-Willard, J. VanderGheynst, 2017 .

A predictor variable for efficacy of Lagenidium giganteum produced in solid-state cultivation

J. VanderGheynst, B. A. May, 2001, Journal of Industrial Microbiology and Biotechnology.

Equilibrium Moisture Isotherms for Synthetic Food Waste And Biosolids Composts

J. VanderGheynst, L. Walker, C. Baker, 1999 .

Development and analysis of oxygen-sensing probes for in situ monitoring of unsaturated solid-state biodegradation processes.

J. VanderGheynst, L. Walker, G. B. VanderGheynst, 1997, Journal of the Air & Waste Management Association.

High-solids aerobic decomposition: pilot-scale reactor development and experimentation

James M. Gossett, Jean S. VanderGheynst, J. VanderGheynst, 1997 .

Impact of thiamine metabolites and spent medium from Chlorella sorokiniana on metabolism in the green algae Auxenochlorella prototheciodes

O. Fiehn, J. VanderGheynst, Brendan T. Higgins, 2018, Algal Research.

Design of formulations for improved biological control agent viability and sequestration during storage

J. VanderGheynst, H. Scher, Hongyun Guo, 2006 .

Almond processing residues as a source of organic acid biopesticides during biosolarization.

Y. Achmon, J. VanderGheynst, James J Stapleton, 2020, Waste management.

Weed seed inactivation in soil mesocosms via biosolarization with mature compost and tomato processing waste amendments.

Y. Achmon, Ruth M. Dahlquist-Willard, J. VanderGheynst, 2017, Pest management science.

Switchgrass leaching requirements for solid‐state fermentation by Acidothermus cellulolyticus

Todd M. Dooley, J. VanderGheynst, F. Rezaei, 2009, Biotechnology progress.

Design and evaluation of a grapevine pruner for biofungicide application.

J. VanderGheynst, D. Giles, N. Sabeh, 2005, Bioresource technology.

Evaluation of PCR primers for denaturing gradient gel electrophoresis analysis of fungal communities in compost

J. VanderGheynst, L. Cocolin, D. Mills, 2003, Journal of applied microbiology.

The effect of circular soil biosolarization treatment on the physiology, metabolomics, and microbiome of tomato plants under certain abiotic stresses

Y. Achmon, J. VanderGheynst, James J Stapleton, 2022, Frontiers in Plant Science.

The effect of microbial inoculation and pH on microbial community structure changes during composting

Jean S. VanderGheynst, J. VanderGheynst, F Lei, 2000 .

Effects of Short-Term Biosolarization Using Mature Compost and Industrial Tomato Waste Amendments on the Generation and Persistence of Biocidal Soil Conditions and Subsequent Tomato Growth.

Y. Achmon, J. VanderGheynst, James J Stapleton, 2018, Journal of agricultural and food chemistry.

Design and Evaluation of PCR Primers for Analysis of Bacterial Populations in Wine by Denaturing Gradient Gel Electrophoresis

J. VanderGheynst, L. Cocolin, D. Mills, 2003, Applied and Environmental Microbiology.

Room-temperature storage of microalgae in water-in-oil emulsions: influence of solid particle type and concentration in the oil phase

J. VanderGheynst, T. Jeoh, H. Scher, 2015, Bioprocess and Biosystems Engineering.

Managing the cultivation and processing of microalgae to prolong storage in water-in-oil emulsions

J. VanderGheynst, Yu-Shen Cheng, L. Fernández, 2014, Applied Microbiology and Biotechnology.

Microorganism viability influences internal phase droplet size changes during storage in water-in-oil emulsions

J. VanderGheynst, Yu-Shen Cheng, H. Scher, 2013, Bioprocess and Biosystems Engineering.

Storage and release of solutes and microalgae from water-in-oil emulsions stabilized by silica nanoparticles

Todd M. Dooley, J. VanderGheynst, Yu-Shen Cheng, 2008 .

A genomic catalog of Earth’s microbiomes

Vincent J. Denef, Natalia N. Ivanova, Paramvir S. Dehal, 2020, Nature Biotechnology.

Evaluation of High Solids Alkaline Pretreatment of Rice Straw

Todd M. Dooley, Yu-Shen Cheng, Bryan M. Jenkins, 2010, Applied biochemistry and biotechnology.

Metatranscriptomic analysis of lignocellulolytic microbial communities involved in high-solids decomposition of rice straw

Amrita Pati, Konstantinos Billis, Blake A Simmons, 2014, Biotechnology for Biofuels.

Critical moisture content for microbial growth in dried food-processing residues.

Farzaneh Rezaei, J. VanderGheynst, F. Rezaei, 2010, Journal of the science of food and agriculture.

Thermophilic enrichment of microbial communities in the presence of the ionic liquid 1‐ethyl‐3‐methylimidazolium acetate

J. VanderGheynst, C. Simmons, B. Simmons, 2012, Journal of applied microbiology.

Influence of moisture content on microbial activity and silage quality during ensilage of food processing residues

Bryan M. Jenkins, Ruihong Zhang, Jean VanderGheynst, 2011, Bioprocess and biosystems engineering.

Influence of leaching pretreatment on fuel properties of biomass

Bryan M. Jenkins, Jean S. VanderGheynst, J. VanderGheynst, 2014 .

High-solids enrichment of thermophilic microbial communities and their enzymes on bioenergy feedstocks

J. VanderGheynst, P. Hugenholtz, S. Singer, 2011 .

Changes of Fusarium oxysporum f.sp. lactucae levels and soil microbial community during soil biosolarization using chitin as soil amendment

Y. Achmon, J. VanderGheynst, James J Stapleton, 2020, PloS one.

Elevated CO2 concentration impacts cell wall polysaccharide composition of green microalgae of the genus Chlorella

J. VanderGheynst, J. Labavitch, Y. Cheng, 2015, Letters in applied microbiology.

Qualitative analysis of algal secretions with multiple mass spectrometric platforms.

Yu-Shen Cheng, Oliver Fiehn, Tobias Kind, 2012, Journal of chromatography. A.

Biofiltration of gasoline vapor by compost media.

J. VanderGheynst, Joon-Seok Park, W. Namkoong, 2003, Environmental pollution.

Dynamic volume-averaged model of heat and mass transport within a compost biofilter: I. Model development.

J. VanderGheynst, M. Rashid, E. Schroeder, 2001, Biotechnology and bioengineering.

Thermophilic enrichment and preservation of microbial communities tolerant to the ionic liquids tetrabutylphosphonium chloride and tributylethylphosphonium diethylphosphate

J. VanderGheynst, B. Simmons, M. Thelen, 2017 .

Enrichment of microbial communities tolerant to the ionic liquids tetrabutylphosphonium chloride and tributylethylphosphonium diethylphosphate

J. VanderGheynst, B. Simmons, S. Singer, 2016, Applied Microbiology and Biotechnology.

Virus infection of Chlorella variabilis and enzymatic saccharification of algal biomass for bioethanol production.

J. VanderGheynst, J. Labavitch, Yu-Shen Cheng, 2013, Bioresource technology.

Preservation of microbial communities enriched on lignocellulose under thermophilic and high-solid conditions

J. VanderGheynst, C. Simmons, B. Simmons, 2015, Biotechnology for Biofuels.

Glycoside Hydrolase Activities of Thermophilic Bacterial Consortia Adapted to Switchgrass

J. VanderGheynst, B. Simmons, P. Hugenholtz, 2011, Applied and Environmental Microbiology.

Student-centered Strategies for Promoting Inclusive, Supportive, Diverse Environments in Graduate STEM Education

J. VanderGheynst, K. Moloney, C. Bronner, 2019 .

The role of periodic agitation and water addition in managing moisture limitations during high-solids aerobic decomposition

J. VanderGheynst, J. Gossett, L. Walker, 1999 .

Comparison of thermophilic anaerobic and aerobic treatment processes for stabilization of green and food wastes and production of soil amendments.

J. VanderGheynst, C. Simmons, Ramin Yazdani, 2018, Waste management.

The role of silica nanoparticles on long‐term room‐temperature stabilization of water‐in‐oil emulsions containing microalgae

J. VanderGheynst, H. Scher, L. Fernández, 2015, Letters in applied microbiology.

Structural changes in bacterial and fungal soil microbiome components during biosolarization as related to volatile fatty acid accumulation

Y. Achmon, Ruth M. Dahlquist-Willard, J. VanderGheynst, 2020 .

Enrichment of microbial communities tolerant to the ionic liquids tetrabutylphosphonium chloride and tributylethylphosphonium diethylphosphate

J. VanderGheynst, B. Simmons, S. Singer, 2016, Applied Microbiology and Biotechnology.

Quantitative real time measurements of bacteria–bacteriophages interactions in fresh lettuce leaves

J. VanderGheynst, C. Simmons, Zhen Luo, 2012 .

Microbial ecology of compost.

W. Bidlingmaier, Megan Nicole Marshall, Jean S. VanderGheynst, 2004 .

Energy Transport in a High‐Solids Aerobic Degradation Process: Mathematical Modeling and Analysis

Jean S. VanderGheynst, J. Parlange, J. VanderGheynst, 1997 .

Organic and Inorganic Nitrogen Impact Chlorella variabilis Productivity and Host Quality for Viral Production and Cell Lysis

J. VanderGheynst, J. Labavitch, Yu-Shen Cheng, 2015, Applied Biochemistry and Biotechnology.

Modeling of photosynthetic aeration for energy-efficient wastewater treatment and reduced greenhouse gas emissions

J. VanderGheynst, Brendan T. Higgins, Shannon J. Ceballos, 2017 .

Managing the cultivation and processing of microalgae to prolong storage in water-in-oil emulsions

J. VanderGheynst, Yu-Shen Cheng, H. Scher, 2014, Applied Microbiology and Biotechnology.

Predicting black soldier fly larvae biomass and methionine accumulation using a kinetic model for batch cultivation and improving system performance using semi-batch cultivation

J. VanderGheynst, J. Fernández-Bayo, H. Bischel, 2021, Bioprocess and Biosystems Engineering.