Jinze Liu

发表

Gene ontology friendly biclustering of expression profiles

Weiqi Wang, Jinze Liu, Jiong Yang, 2004 .

Biclustering in gene expression data by tendency

Jinze Liu, Jiong Yang, Wei Wang, 2004 .

MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery

Derek Y. Chiang, S. J. Coleman, Sara A. Grimm, 2010, Nucleic acids research.

A Fast Approximation to Multidimensional Scaling

L. McMillan, Weiqi Wang, Jinze Liu, 2006 .

Comprehensive genomic characterization of squamous cell lung cancers

Steven J. M. Jones, Joshua M. Stuart, Brian D. O’Connor, 2012, Nature.

Loss of CLN3, the gene mutated in juvenile neuronal ceroid lipofuscinosis, leads to metabolic impairment and autophagy induction in retina pigment epithelium.

Qing Jun Wang, Mihail I Mitov, Jinze Liu, 2020, Biochimica et biophysica acta. Molecular basis of disease.

Automatic Abstracting

Luciano Baresi, Philippe Bonnet, Bernhard Thalheim, 2009, Encyclopedia of Database Systems.

Integrated Genomic Characterization of Papillary Thyroid Carcinoma

Steven J. M. Jones, Benjamin J. Raphael, Evan O. Paull, 2014, Cell.

Tendency based Subspace Clustering on Gene Expression Data

Wei Wang, Jinze Liu, 2003 .

Flexible Clustering by Tendency in High Dimensional Space

Wei Wang, Jinze Liu, 2003 .

Discerning novel splice junctions derived from RNA-seq alignment: a deep learning approach

Jinze Liu, J. MacLeod, Yi Zhang, 2018, BMC Genomics.

DiffSplice: the genome-wide detection of differential splicing events with RNA-seq

Derek Y. Chiang, Christian F. Orellana, P. Kuan, 2012, Nucleic acids research.

A framework for ontology-driven subspace clustering

Jiong Yang, Wei Wang, Jinze Liu, 2004, KDD.

Comprehensive genomic characterization of head and neck squamous cell carcinomas

Steven J. M. Jones, Joshua M. Stuart, Thomas M. Harris, 2015, Nature.

Gene-environment interaction testing in family-based association studies with phenotypically ascertained samples: a causal inference approach.

D. DeMeo, E. Silverman, S. Vansteelandt, 2012, Biostatistics.

Circular RNAs are abundant, conserved, and associated with ALU repeats.

Michael K. Slevin, Jinze Liu, Kai Wang, 2013, RNA.

Adaptive Database Replication

Luciano Baresi, Ioana Manolescu, Philip S. Yu, 2009, Encyclopedia of Database Systems.

A novel data structure to support ultra-fast taxonomic classification of metagenomic sequences with k-mer signatures

Ye Yu, Chen Qian, Jinze Liu, 2017, Bioinform..

Audio Feature Extraction

Luciano Baresi, Philippe Bonnet, Bernhard Thalheim, 2009, Encyclopedia of Database Systems.

Adversarial Information Retrieval

Luciano Baresi, Philippe Bonnet, Bernhard Thalheim, 2009, Encyclopedia of Database Systems.

Latexin Inactivation Enhances Survival and Long-Term Engraftment of Hematopoietic Stem Cells and Expands the Entire Hematopoietic System in Mice

Jinze Liu, Chi Wang, T. Gao, 2017, Stem cell reports.

Structure-based function inference using protein family-specific data

J. Snoeyink, Jun Huan, Wei Wang, 2006 .

Exosomal lipids for classifying early and late stage non-small cell lung cancer.

Jinze Liu, A. Lane, T. Fan, 2018, Analytica chimica acta.

Plant-Symbiotic Fungi as Chemical Engineers: Multi-Genome Analysis of the Clavicipitaceae Reveals Dynamics of Alkaloid Loci

Elissaveta G. Arnaoudova, B. Roe, M. Cox, 2013, PLoS genetics.

REC: fast sparse regression-based multicategory classification

Zhengyuan Zhu, J. Prins, Jinze Liu, 2017 .

Adaptive Metric Techniques

Luciano Baresi, Ioana Manolescu, Philip S. Yu, 2009, Encyclopedia of Database Systems.

Berberine Prevents Disease Progression of Nonalcoholic Steatohepatitis through Modulating Multiple Pathways

Yuan Zhang, Jinze Liu, Jinpeng Liu, 2021, Cells.

Telomere Roles in Fungal Genome Evolution and Adaptation

Jinze Liu, M. Farman, P. Calie, 2021, Frontiers in Genetics.

Approximate Clustering on Distributed Data Streams

Qi Zhang, Wei Wang, Jinze Liu, 2008, 2008 IEEE 24th International Conference on Data Engineering.

BlackOPs: increasing confidence in variant detection through mappability filtering

J. S. Marron, Jinze Liu, Matthew D. Wilkerson, 2013, Nucleic acids research.

Classification of Whole Mammogram and Tomosynthesis Images Using Deep Convolutional Neural Networks

Xiaoqin Wang, Jinze Liu, Xiaofei Zhang, 2018, IEEE Transactions on NanoBioscience.

Cytoplasmic synthesis of endogenous Alu complementary DNA via reverse transcription and implications in age-related macular degeneration

Jennifer A. Erwin, J. Hardin, F. Gage, 2021, Proceedings of the National Academy of Sciences.

iMapSplice: Alleviating reference bias through personalized RNA-seq alignment

Jinze Liu, Xinan Liu, James N MacLeod, 2018, PloS one.

Quaking orchestrates a post-transcriptional regulatory network of endothelial cell cycle progression critical to angiogenesis and metastasis

Jinze Liu, William Y. Kim, A. Sood, 2019, Oncogene.

Biclustering in gene expression data by tendency

Jinze Liu, Jiong Yang, Wei Wang, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

Piecing the puzzle together: a revisit to transcript reconstruction problem in RNA-seq

Jinze Liu, Yin Hu, Yan Huang, 2014, BMC Bioinformatics.

A probabilistic framework for aligning paired-end RNA-seq data

Kai Wang, Jinze Liu, Jan Prins, 2010, Bioinform..

Tissue Restricted Splice Junctions Originate Not Only from Tissue-Specific Gene Loci, but Gene Loci with a Broad Pattern of Expression

S. J. Coleman, Jinze Liu, Z. Zeng, 2015, PloS one.

Gazelle: transcript abundance query against large-scale RNA-seq experiments

Jinze Liu, J. MacLeod, Xiaofei Zhang, 2021, BCB.

Analysis of Unannotated Equine Transcripts Identified by mRNA Sequencing

S. J. Coleman, Jinze Liu, Z. Zeng, 2013, PloS one.

SeqOthello: querying RNA-seq experiments at scale

Ye Yu, Jinze Liu, Chen Qian, 2018, Genome Biology.

SeqOthello: Query over RNA-seq experiments at scale

Yi Zhang, Chen Qian, Ye Yu, 2018, bioRxiv.

FDM: a graph-based statistical method to detect differential transcription using RNA-seq data

Yufeng Liu, Jinze Liu, Jan Prins, 2011, Bioinform..

USING FAST SUBGRAPH ISOMORPHISM CHECKING FOR PROTEIN FUNCTIONAL ANNOTATION USING SCOP AND GENE ONTOLOGY

J. Snoeyink, Jun Huan, Wei Wang, 2004 .

New approaches for clustering high dimensional data

Wei Wang, Jinze Liu, Jinze Liu, 2006 .

Structure‐based function inference using protein family‐specific fingerprints

Jinze Liu, Jack Snoeyink, Jun Huan, 2006, Protein science : a publication of the Protein Society.

Annotation of the Protein Coding Regions of the Equine Genome

S. J. Coleman, T. Kalbfleisch, Jinze Liu, 2015, PloS one.

Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs

Wei Wang, Jack Snoeyink, Jinze Liu, 2008, 2008 IEEE International Conference on Bioinformatics and Biomedicine.

Rapid Determination of Local Structural Features Common to a Set of Proteins

J. Snoeyink, Jun Huan, Wei Wang, 2005 .

OP-cluster: clustering by tendency in high dimensional space

Wei Wang, Jinze Liu, Wei Wang, 2003, Third IEEE International Conference on Data Mining.

Unsupervised learning of high-order structural semantics from images

Ruigang Yang, Jinze Liu, Jizhou Gao, 2009, 2009 IEEE 12th International Conference on Computer Vision.

Whole mammogram image classification with convolutional neural networks

Xiaoqin Wang, Yi Zhang, Nathan Jacobs, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

A Robust Method for Transcript Quantification with RNA-seq Data

Yufeng Liu, Jinze Liu, Jan Prins, 2012, RECOMB.

Tumor Suppressor Par-4 Regulates Complement Factor C3 and Obesity

B. Taylor, Jinze Liu, O. Melander, 2022, Frontiers in Oncology.

Audit Trail

Luciano Baresi, Ioana Manolescu, Vilém Novák, 2020, Encyclopedia of Database Systems.

Correction: Analysis of Unannotated Equine Transcripts Identified by mRNA Sequencing

S. J. Coleman, Jinze Liu, Z. Zeng, 2013, PLoS ONE.

Incremental Subspace Clustering over Multiple Data Streams

Qi Zhang, Wei Wang, Jinze Liu, 2007, Seventh IEEE International Conference on Data Mining (ICDM 2007).

Exploration and comparison of methods for combining population- and family-based genetic association using the Genetic Analysis Workshop 17 mini-exome

Jinze Liu, D. Fardo, P. Breheny, 2011, BMC proceedings.

Inferring Gene Regulatory Networks of Metabolic Enzymes Using Gradient Boosted Trees

Yi Zhang, Xiaofei Zhang, Andrew N Lane, 2020, IEEE Journal of Biomedical and Health Informatics.

DeepSplice: Deep classification of novel splice junctions revealed by RNA-seq

Yi Zhang, Jinze Liu, James N. MacLeod, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse

J. N. MacLeod, M. M. Binns, J. R. Mickelson, 2009, Science.

Bayes estimators for phylogenetic reconstruction

Wenbin Li, Ruriko Yoshida, David Haws, 2009, Systematic biology.

Comprehensive genomic characterization of squamous cell lung cancers

Joshua M. Stuart, Brian D. O’Connor, Charles J. Vaske, 2012, Nature.

A probabilistic framework for aligning paired-end RNA-seq data

Derek Y. Chiang, J. Prins, Jinze Liu, 2010, Bioinform..

A Robust Method for Transcript Quantification with RNA-seq Data

Derek Y. Chiang, J. Prins, Jinze Liu, 2012, RECOMB.

UTS: An Unbalanced Tree Search Benchmark

Stephen L. Olivier, Chau-Wen Tseng, P. Sadayappan, 2006, LCPC.

Structure‐based function inference using protein family‐specific fingerprints

J. Snoeyink, Jun Huan, Wei Wang, 2006, Protein science : a publication of the Protein Society.