C. Elsik

发表

Prediction of Protein Interdomain Linker Regions by a Nonstationary Hidden Markov Model

B. Mallick, Kyounghwa Bae, C. Elsik, 2008 .

The pea aphid genome sequence brings theories of insect defense into question

C. Elsik, 2010, Genome Biology.

Creating a honey bee consensus gene set

G. Weinstock, C. Elsik, D. Roos, 2007, Genome Biology.

Computational and transcriptional evidence for microRNAs in the honey bee genome

Christine G Elsik, Evgeny M Zdobnov, Jay D. Evans, 2007, Genome Biology.

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

Evgeny M. Zdobnov, Dan Graur, Christine G. Elsik, 2010, Proceedings of the National Academy of Sciences.

JBrowse: a dynamic web platform for genome visualization and analysis

Suzanna E Lewis, Colin M. Diesh, Monica Munoz-Torres, 2016, Genome Biology.

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

Hans H. Cheng, S. Foissac, C. Elsik, 2015, Genome Biology.

Deep sequencing reveals complex mechanisms of diapause preparation in the invasive mosquito, Aedes albopictus

Monica F. Poelchau, C. Elsik, D. Denlinger, 2013, Proceedings of the Royal Society B: Biological Sciences.

The Genome of the Sea Urchin Strongylocentrotus purpuratus

Andrew R. Jackson, R. F. Gray, Wendy S. Beane, 2006, Science.

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

K. Worley, C. Elsik, R. Tellam, 2009, Science.

The i5K Initiative: advancing arthropod genomics for knowledge, human health, agriculture, and the environment.

Susan J. Brown, Jay D. Evans, Monica F. Poelchau, 2013, The Journal of heredity.

Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species

Erich Bornberg-Bauer, Peer Bork, Alexandre Souvorov, 2010, Science.

Web Apollo: a web-based genomic annotation editing platform

Monica C Munoz-Torres, Suzanna E Lewis, Lincoln Stein, 2013, Genome Biology.

Approaches taken, progress made, and enhanced utility of long read-based goat, swine, cattle and sheep reference genomes

Timothy P. L. Smith, S. Koren, A. Phillippy, 2016 .

Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)

Brian R. Johnson, James A. Yorke, Dan Graur, 2011, Proceedings of the National Academy of Sciences.

Insights into social insects from the genome of the honeybee Apis mellifera

Ying Wang, Michal Linial, Andrew G. Clark, 2006, Nature.

The Genome of the Model Beetle and Pest Tribolium Castaneum Vertebrate-specific Orthologues Insect-specific Orthologues Homology Undetectable Similarity

Peer Bork, Alexandre Souvorov, Liangjiang Wang, 2022 .

The Genome Sequence of the Leaf-Cutter Ant Atta cephalotes Reveals Insights into Its Obligate Symbiotic Lifestyle

Brian R. Johnson, Erich Bornberg-Bauer, Steven C. Slater, 2011, PLoS genetics.

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

Erich Bornberg-Bauer, Dan Graur, Jürgen Gadau, 2013, Genome research.

Comparative Genomics of Plant Chromosomes

C. Elsik, A. Paterson, T. Lan, 2000, Plant Cell.

The Emerging World of Wikis

Daisuke Kihara, Michael Gribskov, Deborah A. Siegele, 2008, Science.

The genomes of two key bumblebee species with primitive eusocial organization

Erich Bornberg-Bauer, Lars Chittka, Marco Mariotti, 2015, Genome Biology.

Differential gene expression in response to eCry3.1Ab ingestion in an unselected and eCry3.1Ab-selected western corn rootworm (Diabrotica virgifera virgifera LeConte) population

C. Elsik, Tieming Ji, Zi-Xia Zhao, 2019, Scientific Reports.

Carbon isotope composition and gas exchange of loblolly and shortleaf pine as affected by ozone and water stress.

C. Elsik, T. Boutton, R. B. Flagler, 1993 .

Detection of alternative splicing in Diabrotica virgifera virgifera LeConte, in association with Bt resistance using RNA-seq and PacBio Iso-Seq

C. Elsik, Zi-Xia Zhao, B. Hibbard, 2020, bioRxiv.

Bovine Genome Database: new annotation tools for a new reference genome

Colin M. Diesh, Amy T. Walsh, Deborah A. Triant, 2019, Nucleic Acids Res..

Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genome

C. Elsik, L. Alexander, S. Schroeder, 2020, Animal genetics.

De novo assembly of the cattle reference genome with single-molecule sequencing

Steven G. Schroeder, Timothy P. L. Smith, S. Koren, 2020, GigaScience.

Genomic survey of the ectoparasitic mite Varroa destructor, a major pest of the honey bee Apis mellifera

Jay D. Evans, M. Schatz, C. Elsik, 2010, BMC Genomics.

Prediction of Protein Inter-domain Linker Regions by a Hidden Markov Model

B. Mallick, Kyounghwa Bae, C. Elsik, 2005 .

A chromosome-level assembly of the cat flea genome uncovers rampant gene duplication and genome size plasticity

C. Elsik, A. Azad, J. Johnston, 2020, bioRxiv.

Development and Application of Bovine and Porcine Oligonucleotide Arrays with Protein-Based Annotation

C. Elsik, R. Wolfinger, K. Clark, 2010, Journal of biomedicine & biotechnology.

linked to sociality composition and regulation while preserving regulatory features Social insect genomes exhibit dramatic evolution in gene Material Supplemental

Robert M. Waterhouse, D. Reinberg, L. Keller, 2013 .

Upgrading the honey bee genome sequence

C. Elsik, C. Whitfield, M. Beye, 2005 .

Lawrence Berkeley National Laboratory Recent Work Title JBrowse : A dynamic web platform for genome visualization and analysis

Richard D. Hayes, S. Lewis, L. Stein, 2016 .

Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera

Christine G. Elsik, Christopher P. Childers, Kevin L. Childs, 2010, Nucleic Acids Res..

Modernizing the Bovine Reference Genome Assembly

Timothy P. L. Smith, S. Koren, C. Elsik, 2018 .

Bovine Genome Database: Tools for Mining the Bos taurus Genome.

C. Elsik, D. Unni, D. Hagen, 2018, Methods in molecular biology.

Patterns of conservation and change in honey bee developmental genes.

Susan J. Brown, C. Elsik, N. Milshina, 2006, Genome research.

Multi-tiered analyses of honey bees that resist or succumb to parasitic mites and viruses

C. Elsik, B. Cantarel, D. Weaver, 2021, BMC Genomics.

Microsatellite analysis of Pinus taeda L. in Zimbabwe

C. Elsik, Claire G. Williams, R. Barnes, 2000, Heredity.

The Hymenoptera Genome Database

Jaideep P. Sundaram, Donald C. Vile, C. Elsik, 2010 .

Low-copy microsatellite recovery from a conifer genome

C. Elsik, C. Williams, 2001, Theoretical and Applied Genetics.

Global transcriptomic profiles of circulating leucocytes in early lactation cows with clinical or subclinical mastitis

C. Elsik, G. Conant, M. Crowe, 2021, Molecular Biology Reports.

Transcriptome analysis of the honey bee fungal pathogen, Ascosphaera apis: implications for host pathogenesis

C. Elsik, R. Cornman, K. Aronstein, 2012, BMC Genomics.

Finding the missing honey bee genes: lessons learned from a genome upgrade

Dan Graur, Mario Stanke, Monica C Munoz-Torres, 2014, BMC Genomics.

Draft genome of the red harvester ant Pogonomyrmex barbatus

Brian R. Johnson, Dan Graur, Christine G. Elsik, 2011, Proceedings of the National Academy of Sciences of the United States of America.

Hymenoptera Genome Database: new genomes and annotation datasets for improved go enrichment and orthologue analyses

Amy T. Walsh, C. Elsik, M. Shamimuzzaman, 2021, Nucleic Acids Res..

Hymenoptera Genome Database: Using HymenopteraMine to Enhance Genomic Studies of Hymenopteran Insects.

Aditi Tayal, Christine G Elsik, Deepak R Unni, 2018, Methods in molecular biology.

Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine

Christine G. Elsik, Aditi Tayal, Darren E. Hagen, 2015, Nucleic Acids Res..

The genomic basis of evolutionary differentiation among honey bees

Hung N. Nguyen, M. Schatz, R. Guigó, 2021, Genome research.

Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome

Jaideep P. Sundaram, Donald C. Vile, Christine G Elsik, 2010, BMC Genomics.

Global misregulation of genes largely uncoupled to DNA methylome epimutations characterizes a congenital overgrowth syndrome

C. Elsik, Tieming Ji, D. Hagen, 2017, Scientific Reports.

Retroelements contribute to the excess low-copy-number DNA in pine

C. Elsik, C. Williams, 2000, Molecular and General Genetics MGG.

Molecular traces of alternative social organization in a termite genome

Jun Wang, W. Gronenberg, E. Bornberg-Bauer, 2014, Nature Communications.

RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee

Christine G. Elsik, Gene E. Robinson, Kim C. Worley, 2013, Proceedings of the National Academy of Sciences.

Manual superscaffolding of honey bee (Apis mellifera) chromosomes 12–16: implications for the draft genome assembly version 4, gene annotation, and chromosome structure

R. Agarwala, C. Elsik, J. Reese, 2007, Insect molecular biology.

Community annotation: procedures, protocols, and supporting tools.

Christine G Elsik, Kim C Worley, Justin T Reese, 2006, Genome research.

Prediction of protein interdomain linker regions by a hidden Markov model

Bani K. Mallick, Christine G. Elsik, Kyounghwa Bae, 2005, Bioinform..

Prediction of Protein Inter-domain Linker Regions by a Hidden Markov Model

B. Mallick, Kyounghwa Bae, C. Elsik, 2005 .

Identification of REST targets in the Xenopus tropicalis genome

C. Elsik, C. Childers, Banu Saritas-Yildirim, 2015, BMC Genomics.

Characterization of global loss of imprinting in fetal overgrowth syndrome induced by assisted reproduction

C. Elsik, Tieming Ji, D. Hagen, 2015, Proceedings of the National Academy of Sciences.

Discovery of candidate genes and pathways in the endometrium regulating ovine blastocyst growth and conceptus elongation.

C. Elsik, D. Adelson, T. Spencer, 2009, Physiological genomics.

JBrowse: a dynamic web platform for genome visualization and analysis

Colin M. Diesh, Richard D. Hayes, S. Lewis, 2016, Genome Biology.

Identification of large offspring syndrome during pregnancy through ultrasonography and maternal blood transcriptome analyses

C. Spinka, C. Elsik, P. Hansen, 2022, Scientific Reports.

Cat fleas in flux: Rampant gene duplication, genome size plasticity, and paradoxical Wolbachia infection

C. Elsik, A. Azad, Timothy P. Driscoll, 2020 .

Low-copy microsatellite markers for Pinus taeda L.

C. Elsik, C. Williams, A. Scarpa, 2000, Genome.

A de novo transcriptome of the Asian tiger mosquito, Aedes albopictus, to identify candidate transcripts for diapause preparation

Monica F. Poelchau, C. Elsik, D. Denlinger, 2011, BMC Genomics.

MaizeGDB 2018: the maize multi-genome genetics and genomics database

Christine G. Elsik, Lisa C. Harper, Mary L. Schaeffer, 2018, Nucleic Acids Res..

Global assessment of imprinted gene expression in the bovine conceptus by next generation sequencing

C. Elsik, P. Hansen, Tieming Ji, 2016, Epigenetics.

Bovine Genome Database: new tools for gleaning function from the Bos taurus genome

Christine G. Elsik, Aditi Tayal, Darren E. Hagen, 2015, Nucleic Acids Res..

Bovine Genome Database: integrated tools for genome annotation and discovery

David L. Adelson, Christine G. Elsik, Christopher P. Childers, 2010, Nucleic Acids Res..

Apollo: Democratizing genome annotation

Colin Diesh, Suzanna E Lewis, Colin M. Diesh, 2019, bioRxiv.

Detection of alternative splicing in western corn rootworm (Diabrotica virgifera virgifera LeConte) in association with eCry3.1Ab resistance using RNA‐seq and PacBio Iso‐Seq

C. Elsik, B. Hibbard, K. Shelby, 2021, Insect molecular biology.

Transcriptome sequencing as a platform to elucidate molecular components of the diapause response in the Asian tiger mosquito Aedes albopictus

Monica F. Poelchau, C. Elsik, D. Denlinger, 2013, Physiological entomology.

RNA-Seq reveals early distinctions and late convergence of gene expression between diapause and quiescence in the Asian tiger mosquito, Aedes albopictus

Monica F. Poelchau, C. Elsik, D. Denlinger, 2013, Journal of Experimental Biology.

Conserved ortholog sets in forest trees

C. Elsik, D. Neale, K. Krutovsky, 2006, Tree Genetics & Genomes.

Analysis of Sus scrofa liver proteome and identification of proteins differentially expressed between genders, and conventional and genetically enhanced lines.

Moshe A. Gadish, C. Elsik, D. Chiu, 2008, Comparative biochemistry and physiology. Part D, Genomics & proteomics.

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

Stephen P. Ficklin, Nic Herndon, Leonore Reiser, 2018, Database J. Biol. Databases Curation.

Leaf-level and whole-plant gas exchange characteristics of shortleaf pine exposed to ozone and simulated acid rain.

C. Elsik, J. Lock, R. B. Flagler, 1994, Tree physiology.

Nuclear translocation of vitellogenin in the honey bee (Apis mellifera)

C. Elsik, G. Amdam, E. Herrero-Galán, 2021, bioRxiv.

AgAnimalGenomes: browsers for viewing and manually annotating farm animal genomes

Amy T. Walsh, C. Elsik, N. Cockett, 2023, Mammalian Genome.

Families of clustered microsatellites in a conifer genome

C. Elsik, C. Williams, 2001, Molecular Genetics and Genomics.

Unlocking the bovine genome

Danielle G. Lemay, K. Worley, C. Elsik, 2009, BMC Genomics.

Differential gene expression in response to eCry3.1Ab ingestion in an unselected and eCry3.1Ab-selected western corn rootworm (Diabrotica virgifera virgifera LeConte) population

C. Elsik, Tieming Ji, B. Hibbard, 2019, Scientific Reports.

Identification of REST targets in the Xenopus tropicalis genome

C. Elsik, C. Childers, Banu Saritas-Yildirim, 2015, BMC Genomics.

MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database

Christine G. Elsik, Aditi Tayal, Jack M. Gardiner, 2020, Frontiers in Plant Science.

to accelerate genome-to-phenome with the Functional Annotation of Genomes project.

D. Burt, S. Foissac, C. Elsik, 2015 .

Toward a Data Infrastructure for the Plant Cell Atlas.

Timothy L. Tickle, Peter W. Harrison, B. Paten, 2022, Plant physiology.

Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)

Brian R Johnson, M. C. Murphy, Vilaiwan M. Fernandes, 2011, Proceedings of the National Academy of Sciences.

Nuclear translocation of vitellogenin in the honey bee (Apis mellifera)

C. Elsik, G. Amdam, E. Herrero-Galán, 2022, Apidologie.

The genome of the model beetle and pest Tribolium castaneum

Susan J. Brown, Jeffery P. Demuth, Robert M. Waterhouse, 2008, Nature.

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

Robert M. Waterhouse, Shelby L. Bidwell, Allison A. Regier, 2010, Proceedings of the National Academy of Sciences.

Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species

Timothy B Sackton, Robert M. Waterhouse, Andrew K. Jones, 2010, Science.

Finding the missing honey bee genes: lessons learned from a genome upgrade

Radhika S. Khetani, R. Guigó, R. Gibbs, 2014, BMC Genomics.

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

K. Worley, C. Elsik, R. Tellam, 2009, Science.

The i5K Initiative: advancing arthropod genomics for knowledge, human health, agriculture, and the environment.

Susan J. Brown, Monica F. Poelchau, G. Robinson, 2013, The Journal of heredity.

Web Apollo: a web-based genomic annotation editing platform

C. Elsik, Robert M. Buels, M. Munoz-Torres, 2013, Genome Biology.