W. Baase

发表

Structural and thermodynamic consequences of burying a charged residue within the hydrophobic core of T4 lysozyme.

B. Matthews, S. Dao-pin, D. E. Anderson, 1991, Biochemistry.

Energetic origins of specificity of ligand binding in an interior nonpolar cavity of T4 lysozyme.

B. Matthews, W. Baase, A. Morton, 1995, Biochemistry.

A cavity-containing mutant of T4 lysozyme is stabilized by buried benzene

B. Matthews, W. Baase, J. A. Wozniak, 1993, Nature.

A model binding site for testing scoring functions in molecular docking.

B. Matthews, B. Shoichet, W. Baase, 2002, Journal of molecular biology.

Docking molecules by families to increase the diversity of hits in database screens: Computational strategy and experimental evaluation

B. Matthews, B. Shoichet, W. Baase, 2001, Proteins.

Binding of small electron-dense ligands in large protein cavities

B. Matthews, W. Baase, Michael L. Quillin, 1996 .

The response of T4 lysozyme to large‐to‐small substitutions within the core and its relation to the hydrophobic effect

B. Matthews, W. Baase, J. Xu, 1998, Protein science : a publication of the Protein Society.

Disulfide bonds and thermal stability in T4 lysozyme.

L. J. Perry, W. Baase, W. Becktel, 1988, Proceedings of the National Academy of Sciences of the United States of America.

Structural and thermodynamic analysis of the packing of two alpha-helices in bacteriophage T4 lysozyme.

J A Wozniak, B. Matthews, W. Baase, 1991 .

Design and structural analysis of alternative hydrophobic core packing arrangements in bacteriophage T4 lysozyme.

B. Matthews, J. Hurley, W. Baase, 1993, Journal of molecular biology.

Multiple alanine replacements within α‐helix 126–134 of T4 lysozyme have independent, additive effects on both structure and stability

B. Matthews, W. Baase, X. Zhang, 1991, Protein science : a publication of the Protein Society.

Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect.

B. Matthews, W. Baase, A. Eriksson, 1992, Science.

Dissection of helix capping in T4 lysozyme by structural and thermodynamic analysis of six amino acid substitutions at Thr 59

Uwe Sauer, Brian W. Matthews, U. Sauer, 1993 .

Comparing the thermodynamic stabilities of a related thermophilic and mesophilic enzyme.

B K Shoichet, B. Shoichet, W. Baase, 1999, Biochemistry.

A relationship between protein stability and protein function.

B K Shoichet, B. Matthews, B. Shoichet, 1995, Proceedings of the National Academy of Sciences of the United States of America.

Lessons from the lysozyme of phage T4

Dale E Tronrud, Brian W Matthews, B. Matthews, 2010, Protein science : a publication of the Protein Society.

A helix initiation signal in T4 lysozyme identified by polyalanine mutagenesis.

Brian W Matthews, B. Matthews, W. Baase, 1995, Biophysical chemistry.

A test of proposed rules for helix capping: Implications for protein design

B. Matthews, W. Baase, M. Sagermann, 2002, Protein science : a publication of the Protein Society.

Hydrophobic core repacking and aromatic–aromatic interaction in the thermostable mutant of T4 lysozyme ser 117 → phe

D. E. Anderson, B. Matthews, J. Hurley, 1993, Protein science : a publication of the Protein Society.

B. Matthews, W. Baase, A. Eriksson, 1993, Journal of molecular biology.

Substitution with selenomethionine can enhance the stability of methionine-rich proteins.

B. Matthews, W. Baase, A. Hausrath, 1999, Journal of molecular biology.

Enhancement of protein stability by the combination of point mutations in T4 lysozyme is additive.

B K Shoichet, B. Matthews, B. Shoichet, 1995, Protein engineering.

Precollapse of T7 DNA by spermidine at low ionic strength: A linear dichroism and intrinsic viscosity study

W. Baase, S. Allison, P. Staskus, 1984, Biopolymers.

Environment induced changes in DNA structure

W. Baase, J. Schellman, 1986 .

Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme

B. Matthews, W. Baase, Michael L. Quillin, 2001, Protein science : a publication of the Protein Society.

Methionine and alanine substitutions show that the formation of wild-type-like structure in the carboxy-terminal domain of T4 lysozyme is a rate-limiting step in folding.

B. Matthews, W. Baase, F. Dahlquist, 1999, Biochemistry.

Sequential reorganization of β‐sheet topology by insertion of a single strand

B. Matthews, W. Baase, M. Sagermann, 2006 .

Multiple methionine substitutions are tolerated in T4 lysozyme and have coupled effects on folding and stability.

B. Matthews, W. Baase, L. Weaver, 2003, Biophysical chemistry.

Conformation and circular dichroism of DNA

W. C. Johnson, W. Baase, C. Sprecher, 1979, Biopolymers.

Low Energy CD of RNA Hairpin Unveils a Loop Conformation Required for λN Antitermination Activity*

P. V. von Hippel, W. Baase, N. Johnson, 2005, Journal of Biological Chemistry.

Low-energy circular dichroism of 2-aminopurine dinucleotide as a probe of local conformation of DNA and RNA.

P. V. von Hippel, W. Baase, N. Johnson, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Mapping the interactions of the single-stranded DNA binding protein of bacteriophage T4 (gp32) with DNA lattices at single nucleotide resolution: gp32 monomer binding

P. V. von Hippel, W. Baase, S. Weitzel, 2015, Nucleic acids research.

Circular dichroism and DNA secondary structure.

W. C. Johnson, W. Baase, W. Johnson, 1979, Nucleic acids research.

Characterization of Nucleocapsid Binding by the Measles Virus and Mumps Virus Phosphoproteins

W. Baase, L. Gay, R. Kingston, 2004, Journal of Virology.

How amino-acid insertions are allowed in an α-helix of T4 lysozyme

Dirk W. Heinz, Brian W. Matthews, Frederick W. Dahlquist, 1993, Nature.

Evidence for Z-form RNA by vacuum UV circular dichroism

P. Cruz, Ignacio Tinoco, K. Hall, 1985, Nucleic Acids Res..

An omega protein from Drosophila melanogaster.

W. Baase, J. Wang, 1974, Biochemistry.

Structure of a hinge-bending bacteriophage T4 lysozyme mutant, Ile3-->Pro.

B. Matthews, H. Nicholson, W. Baase, 1993, Journal of molecular biology.

Sequential reorganization of beta-sheet topology by insertion of a single strand.

B. Matthews, W. Baase, M. Sagermann, 2006, Protein science : a publication of the Protein Society.

Thermodynamic and structural compensation in "size-switch" core repacking variants of bacteriophage T4 lysozyme.

B. Matthews, W. Baase, J. Xu, 1996, Journal of molecular biology.

Investigating local conformations of double-stranded DNA by low-energy circular dichroism of pyrrolo-cytosine.

P. V. von Hippel, W. Baase, N. Johnson, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Context‐dependent protein stabilization by methionine‐to‐leucine substitution shown in T4 lysozyme

L. A. Lipscomb, W. Baase, N. Gassner, 1998, Protein science : a publication of the Protein Society.

Multiple alanine replacements within a-helix 126-134 of T 4 lysozyme

B. Matthews, W. Baase, X.‐J. Zhang, 2002 .

Protein structural plasticity exemplified by insertion and deletion mutants in T4 lysozyme

B. Matthews, W. Baase, I. Vetter, 1996, Protein science : a publication of the Protein Society.

Contributions of all 20 amino acids at site 96 to the stability and structure of T4 lysozyme

Brian W Matthews, B. Matthews, W. Baase, 2009, Protein science : a publication of the Protein Society.

Structural and thermodynamic characterization of T4 lysozyme mutants and the contribution of internal cavities to pressure denaturation.

Sol M Gruner, Brian W Matthews, B. Matthews, 2008, Biochemistry.

Alanine‐scanning mutagenesis of the β‐sheet region of phage T4 lysozyme suggests that tertiary context has a dominant effect on β‐sheet formation

B. Matthews, W. Baase, Z. A. Wood, 2004, Protein science : a publication of the Protein Society.

Use of sequence duplication to engineer a ligand-triggered, long-distance molecular switch in T4 lysozyme.

B. Matthews, W. Baase, Mohammad S Yousef, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Repacking the Core of T4 lysozyme by automated design.

Stephen L Mayo, Brian W Matthews, S. L. Mayo, 2003, Journal of molecular biology.

Use of a non-rigid region in T4 lysozyme to design an adaptable metal-binding site.

B. Matthews, W. Baase, X. Zhang, 2000, Protein engineering.

Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme.

I R Vetter, B. Matthews, C. Bustamante, 2000, Proceedings of the National Academy of Sciences of the United States of America.

The introduction of strain and its effects on the structure and stability of T4 lysozyme.

B. Matthews, W. Baase, B W Matthews, 1999, Journal of molecular biology.

Structural analysis of a non-contiguous second-site revertant in T4 lysozyme shows that increasing the rigidity of a protein can enhance its stability.

B. Matthews, W. Baase, L. Weaver, 1999, Journal of molecular biology.

Structural characterization of an engineered tandem repeat contrasts the importance of context and sequence in protein folding.

B. Matthews, W. Baase, M. Sagermann, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Generation of ligand binding sites in T4 lysozyme by deficiency-creating substitutions.

B. Matthews, W. Baase, X. Zhang, 1998, Journal of molecular biology.

Isolation and characterization of multiple-methionine mutants of T4 lysozyme with simplified cores

B. Matthews, B. Shoichet, W. Baase, 1997 .

The role of backbone flexibility in the accommodation of variants that repack the core of T4 lysozyme.

B. Matthews, W. Baase, E. Baldwin, 1994, Science.

Development of an in vivo method to identify mutants of phage T4 lysozyme of enhanced thermostability

Philip Pjura, B. Matthews, M. Matsumura, 1993, Protein science : a publication of the Protein Society.

Cumulative site-directed charge-change replacements in bacteriophage T4 lysozyme suggest that long-range electrostatic interactions contribute little to protein stability.

J A Wozniak, E Söderlind, U. Sauer, 1991, Journal of molecular biology.

A mutant T4 lysozyme (Val 131 → Ala) designed to increase thermostability by the reduction of strain within an α‐helix

B. Matthews, S. Dao-pin, W. Baase, 1990, Proteins.

A test of the "jigsaw puzzle" model for protein folding by multiple methionine substitutions within the core of T4 lysozyme.

B. Matthews, W. Baase, N. Gassner, 1996, Proceedings of the National Academy of Sciences of the United States of America.

Low-temperature unfolding of a mutant of phage T4 lysozyme. 2. Kinetic investigations.

W. Baase, B. L. Chen, J. Schellman, 1989, Biochemistry.

Thermal denaturation of bacteriophage T4 lysozyme at neutral pH.

W. Baase, W. Becktel, 1987, Biopolymers.

A lysoplate assay for Escherichia coli cell wall-active enzymes.

W. Baase, W. Becktel, 1985, Analytical biochemistry.

Structural and genetic analysis of electrostatic and other interactions in bacteriophage T4 lysozyme.

J A Wozniak, B. Matthews, H. Nicholson, 1991, Ciba Foundation symposium.

Protein folding: assignment of the energetic changes of reversible chemical modifications to the folded or unfolded states.

W. Baase, F. Dahlquist, J. Lu, 1992, Biochemistry.

Folding kinetics of T4 lysozyme and nine mutants at 12 degrees C.

H. Nicholson, W. Baase, B. L. Chen, 1992, Biochemistry.

Hydrophobic core repacking and aromatic-aromatic interaction in the thermostable mutant of T 4 lysozyme

J. Hurley, W. Baase, JAMES H. HURLEY, 2002 .

Folding and function of a T4 lysozyme containing 10 consecutive alanines illustrate the redundancy of information in an amino acid sequence.

B. Matthews, W. Baase, D. Heinz, 1992, Proceedings of the National Academy of Sciences of the United States of America.

How amino-acid insertions are allowed in an alpha-helix of T4 lysozyme.

B. Matthews, W. Baase, F. Dahlquist, 1993, Nature.

Toward a simplification of the protein folding problem: a stabilizing polyalanine alpha-helix engineered in T4 lysozyme.

B. Matthews, W. Baase, X. Zhang, 1991, Biochemistry.

Dissection of protein structure and folding by directed mutagenesis.

U. Sauer, B. Matthews, W. Baase, 1992, Faraday discussions.

internal sites in T4 lysozyme Structural and thermodynamic analysis of the binding of solvent at

B. Matthews, W. Baase, Michael L. Quillin, 2008 .

Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme

B. Matthews, W. Baase, Michael L. Quillin, 2001, Protein Science.

Mapping the interactions of the single-stranded DNA binding protein of bacteriophage T4 (gp32) with DNA lattices at single nucleotide resolution: polynucleotide binding and cooperativity

P. V. von Hippel, W. Baase, S. Weitzel, 2015, Nucleic acids research.

DNA models of trinucleotide frameshift deletions: the formation of loops and bulges at the primer–template junction

P. V. von Hippel, W. Baase, Davis Jose, 2009, Nucleic acids research.

Dissection of helix capping in T4 lysozyme by structural and thermodynamic analysis of six amino acid substitutions at Thr 59.

U. Sauer, B. Matthews, W. Baase, 1992, Biochemistry.

Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding.

Brian W Matthews, B. Matthews, W. Baase, 2009, Journal of molecular biology.

Hydrophobic packing in T4 lysozyme probed by cavity-filling mutants.

B. Matthews, M. Matsumura, W. Baase, 1989, Proceedings of the National Academy of Sciences of the United States of America.

Alanine scanning mutagenesis of the alpha-helix 115-123 of phage T4 lysozyme: effects on structure, stability and the binding of solvent.

B. Matthews, W. Baase, M. Blaber, 1995, Journal of molecular biology.

Secondary structure of nucleic acids in the folded chromosome from E. coli.

W. Baase, W. Johnson, 1976, Nucleic acids research.

Double-stranded DNA templates can induce alpha-helical conformation in peptides containing lysine and alanine: functional implications for leucine zipper and helix-loop-helix transcription factors.

P. V. von Hippel, W. Baase, J. Lindstrom, 1994, Proceedings of the National Academy of Sciences of the United States of America.

Circular dichroism and DNA secondary structure

W. Baase, W. Johnson, 1979 .

Low-energy circular dichroism of 2-aminopurine dinucleotide as a probe of local conformation of DNA and RNA.

P. V. von Hippel, W. Baase, N. Johnson, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Lessons from the lysozyme of phage T4

B. Matthews, W. Baase, D. Tronrud, 2010, Protein science : a publication of the Protein Society.

Structural and thermodynamic characterization of T4 lysozyme mutants and the contribution of internal cavities to pressure denaturation.

B. Matthews, W. Baase, S. Gruner, 2008, Biochemistry.

Cumulative site-directed charge-change replacements in bacteriophage T4 lysozyme suggest that long-range electrostatic interactions contribute little to protein stability.

U. Sauer, B. Matthews, W. Baase, 1991, Journal of molecular biology.