Jason M. Johnson

发表

Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs

J. Castle, L. Lim, N. Lau, 2005, Nature.

Transcripts Targeted by the MicroRNA-16 Family Cooperatively Regulate Cell Cycle Progression

L. Lim, J. Schelter, P. Linsley, 2007, Molecular and Cellular Biology.

Differential expression of 24 , 426 human alternative splicing events and predicted cis-regulation in 48 tissues and cell lines

Jyoti K. Shah, J. Castle, T. Cooper, 2011 .

Genome-Wide Survey of Human Alternative Pre-mRNA Splicing with Exon Junction Microarrays

J. Castle, R. Stoughton, E. Schadt, 2003, Science.

Protein Interaction Networks

M. Pellegrini, Jason M. Johnson, D. Haynor, 2004, Expert review of proteomics.

Mapping the Genetic Architecture of Gene Expression in Human Liver

John D. Storey, K. Hao, A. Kasarskis, 2008, PLoS biology.

Definition, conservation and epigenetics of housekeeping and tissue-enriched genes

J. Castle, X. She, Jason M. Johnson, 2009, BMC Genomics.

Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing

Eric E Schadt, John Castle, Roland Stoughton, 2003, Genome Biology.

A comprehensive transcript index of the human genome generated using microarrays and computational approaches

Vladimir Svetnik, Eric E Schadt, Andrew Kasarskis, 2004, Genome Biology.

Expression of alternatively spliced sodium channel alpha-subunit genes. Unique splicing patterns are observed in dorsal root ganglia.

Zhengyan Kan, John Castle, J. Castle, 2004, The Journal of biological chemistry.

expression data: the tissue distribution of human pathways

J. Castle, M. Pellegrini, Jason M. Johnson, 2006 .

A quantitative atlas of polyadenylation in five mammals

T. Babak, P. Garrett-engele, Jason M. Johnson, 2012, Genome research.

Global regulation of alternative splicing during myogenic differentiation

Eric T. Wang, J. Castle, E. Wang, 2010, Nucleic acids research.

A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart

J. Castle, C. Burge, T. Cooper, 2008, Proceedings of the National Academy of Sciences.

Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments.

E. Schadt, D. Shoemaker, Jason M. Johnson, 2005, Trends in genetics : TIG.

Position-specific chemical modification of siRNAs reduces "off-target" transcript silencing.

L. Lim, J. Schelter, P. Linsley, 2006, RNA.

Global Survey of Genomic Imprinting by Transcriptome Sequencing

T. Babak, L. Lim, Jason M. Johnson, 2008, Current Biology.

Simple, quantitative primer-extension PCR assay for direct monitoring of microRNAs and short-interfering RNAs.

Brian S. Roberts, L. Lim, Jason M. Johnson, 2005, RNA.

Plasma MicroRNAs as sensitive and specific biomarkers of tissue injury.

Frank D Sistare, Warren E Glaab, L. Lim, 2009, Clinical chemistry.

Digital Genome-Wide ncRNA Expression, Including SnoRNAs, across 11 Human Tissues Using PolyA-Neutral Amplification

Martin Löwer, John C. Castle, Ronghua Chen, 2010, PloS one.

Evolutionarily conserved and diverged alternative splicing events show different expression and functional profiles

John C. Castle, Zhengyan Kan, J. Castle, 2005, Nucleic acids research.

Plasma MicroRNAs as Diagnostically Sensitive and Specific Biomarkers of Tissue Injury

L. Lim, P. Garrett-engele, Jason M. Johnson, 2009 .

Transcripts Targeted by the MicroRNA-16 Family Cooperatively Regulate Cell Cycle Progression

L. Lim, J. Schelter, P. Linsley, 2007, Molecular and Cellular Biology.

Regulation of RNA splicing by the methylation-dependent transcriptional repressor methyl-CpG binding protein 2.

Juan I. Young, J. Castle, H. Zoghbi, 2005, Proceedings of the National Academy of Sciences of the United States of America.

" off-target " transcript silencing Position-specific chemical modification of siRNAs reduces

L. Lim, J. Schelter, P. Linsley, 2006 .

Digital transcriptome profiling using selective hexamer priming for cDNA synthesis

Ronghua Chen, Tomas Babak, Jyoti K Shah, 2009, Nature Methods.

DNA copy number, including telomeres and mitochondria, assayed using next-generation sequencing

Ronghua Chen, Tao Xie, Carol A Rohl, 2010, BMC Genomics.

PDE4B5, a Novel, Super-Short, Brain-Specific cAMP Phosphodiesterase-4 Variant Whose Isoform-Specifying N-Terminal Region Is Identical to That of cAMP Phosphodiesterase-4D6 (PDE4D6)

J. Castle, P. Garrett-engele, Jason M. Johnson, 2007, Journal of Pharmacology and Experimental Therapeutics.

Exon and junction microarrays detect widespread mouse strain- and sex-bias expression differences

Jyoti K. Shah, J. Castle, E. Schadt, 2008, BMC Genomics.

PDE 4 B 5 , a Novel , Super-Short , Brain-Specific cAMP Phosphodiesterase-4 Variant Whose Isoform-Specifying N-Terminal Region Is Identical to That of cAMP Phosphodiesterase-4 D 6 ( PDE 4 D 6 )

J. Castle, P. Garrett-engele, Jason M. Johnson, 2007 .

Genetic validation of whole-transcriptome sequencing for mapping expression affected by cis-regulatory variation

Eric E Schadt, Ronghua Chen, Tomas Babak, 2010, BMC Genomics.

Detection of Novel Splice Forms in Human and Mouse Using Cross-Species Approach

John Castle, Zhengyan Kan, Jason M. Johnson, 2003, Pacific Symposium on Biocomputing.

Erratum: Regulation of RNA splicing by the methylation-dependent transcriptional repressor methyl-CpG binding protein 2 (Proceedings of the National Academy of Sciences of the United States of America (December 6, 2005) 102, 49 (17551-17558) DOI: 10.1073/pnas.0507856102)

Juan I. Young, J. Castle, H. Zoghbi, 2006, Proceedings of the National Academy of Sciences of the United States of America.

ACC2 Is Expressed at High Levels Human White Adipose and Has an Isoform with a Novel N-Terminus

J. Castle, P. Garrett-engele, Jason M. Johnson, 2009, PloS one.

Differential expression of 24,426 human alternative splicing events and predicted cis-regulation in 48 tissues and cell lines

Jyoti K. Shah, J. Castle, T. Cooper, 2008, Nature genetics.