A. Cohen

Neil R. Smalheiser, Dina Demner-Fushman, Ida Sim, 2013, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

From simply inaccurate to complex and inaccurate: complexity in standards-based quality measures.

John F. Hurdle, David A Dorr, Aaron M Cohen, 2011, AMIA ... Annual Symposium proceedings. AMIA Symposium.

Criticisms of evidence-based medicine.

William R Hersh, W. Hersh, A. Cohen, 2004, Evidence-based cardiovascular medicine.

Modelling disease risk for amyloid A (AA) amyloidosis in non-human primates using machine learning

A. Cohen, K. Prongay, A. Lewis, 2019, Amyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis.

Integrative analysis of drug response and clinical outcome in acute myeloid leukemia.

R. Collins, A. Cohen, Guanming Wu, 2022, Cancer cell.

Testing a filtering strategy for systematic reviews: evaluating work savings and recall.

M. McDonagh, A. Cohen, N. Smalheiser, 2022, AMIA ... Annual Symposium proceedings. AMIA Symposium.

Design and implementation of Metta, a metasearch engine for biomedical literature retrieval intended for systematic reviewers

Yu Jiang, Clement T. Yu, Clement Yu, 2014, Health Inf. Sci. Syst..

Identifying reports of randomized controlled trials (RCTs) via a hybrid machine learning and crowdsourcing approach

Neil R. Smalheiser, Byron C. Wallace, Aaron M. Cohen, 2017, J. Am. Medical Informatics Assoc..

Using co-occurrence network structure to extract synonymous gene and protein names from MEDLINE abstracts

Kent A. Spackman, William R. Hersh, Aaron M. Cohen, 2005, BMC Bioinformatics.

Are figure legends sufficient? Evaluating the contribution of associated text to biomedical figure comprehension

Hong Yu, Shashank Agarwal, Mark Johnston, 2009, Journal of biomedical discovery and collaboration.

TREC 2007 Genomics Track Overview

Marti A. Hearst, William R. Hersh, Dale Kraemer, 2007, TREC.

A categorization and analysis of the criticisms of Evidence-Based Medicine

William R. Hersh, P. Zoë Stavri, Aaron M. Cohen, 2004, Int. J. Medical Informatics.

OHSU CLEF 2018 Task 2 Diagnostic Test Accuracy Ranking using Publication Type Cluster Similarity Measures

Neil R. Smalheiser, Aaron M. Cohen, A. Cohen, 2018, CLEF.

Reducing workload in systematic review preparation using automated citation classification.

William R. Hersh, Po-Yin Yen, Aaron M. Cohen, 2006, Journal of the American Medical Informatics Association : JAMIA.

Studying the potential impact of automated document classification on scheduling a systematic review update

Aaron M. Cohen, Marian McDonagh, Kyle H. Ambert, 2012, BMC Medical Informatics and Decision Making.

Impact of COVID-19 in patients on active melanoma therapy and with history of melanoma

Philip S. Yu, Sharon S. Choi, Omar H. Butt, 2023, BMC Cancer.

Research Paper: A System for Classifying Disease Comorbidity Status from Medical Discharge Summaries Using Automated Hotspot and Negated Concept Detection

Aaron M. Cohen, Kyle H. Ambert, A. Cohen, 2009, J. Am. Medical Informatics Assoc..

Letter: Performance of support-vector-machine-based classification on 15 systematic review topics evaluated with the WSS@95 measure

Aaron M. Cohen, A. Cohen, 2011, J. Am. Medical Informatics Assoc..

Aggregator: a machine learning approach to identifying MEDLINE articles that derive from the same underlying clinical trial.

Philip S. Yu, Weixiang Shao, Clive E Adams, 2015, Methods.

Automated confidence ranked classification of randomized controlled trial articles: an aid to evidence-based medicine

Philip S. Yu, Clement T. Yu, Neil R. Smalheiser, 2015, J. Am. Medical Informatics Assoc..

Evidence-based medicine, the essential role of systematic reviews, and the need for automated text mining tools

Philip S. Yu, Clement T. Yu, Neil R. Smalheiser, 2010, IHI.

Research Paper: Cross-Topic Learning for Work Prioritization in Systematic Review Creation and Update

Aaron M. Cohen, Marian McDonagh, Kyle H. Ambert, 2009, J. Am. Medical Informatics Assoc..

SYRIAC: The SYstematic Review Information Automated Collection System A Data Warehouse for Facilitating Automated Biomedical Text Classification

Aaron M. Cohen, Jianji Yang, Marian McDonagh, 2008, AMIA.

k-Information Gain Scaled Nearest Neighbors: A Novel Approach to Classifying Protein-Protein Interaction-Related Documents

Aaron M. Cohen, Kyle H. Ambert, A. Cohen, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A Mixed Methods Task Analysis of the Implementation and Validation of EHR-Based Clinical Quality Measures

David A. Dorr, Aaron M. Cohen, Deborah V. Woodcock, 2016, AMIA.

Towards augmenting structured EHR data: a comparison of manual chart review and patient self-report

David A Dorr, Aaron M Cohen, Nicole G Weiskopf, 2019, AMIA.

Design of a generic, open platform for machine learning-assisted indexing and clustering of articles in PubMed, a biomedical bibliographic database

Aaron M Cohen, Neil R Smalheiser, A. Cohen, 2018, Data Inf. Manag..

Evaluation of Clinical Text Segmentation to Facilitate Cohort Retrieval

Dina Demner-Fushman, William R. Hersh, Steven Bedrick, 2017, AMIA.

A comparative analysis of retrieval features used in the TREC 2006 Genomics Track passage retrieval task

William R. Hersh, Aaron M. Cohen, Hari Krishna Rekapalli, 2007, AMIA.

Unsupervised low-dimensional vector representations for words, phrases and text that are transparent, scalable, and produce similarity metrics that are not redundant with neural embeddings

Neil R. Smalheiser, Gary Bonifield, Aaron M. Cohen, 2019, J. Biomed. Informatics.

An Effective General Purpose Approach for Automated Biomedical Document Classification

Aaron M. Cohen, A. Cohen, 2006, AMIA.

A survey of current work in biomedical text mining

W. Hersh, A. Cohen, 2005, Briefings Bioinform..

Tasks, topics and relevance judging for the TREC Genomics Track: five years of experience evaluating biomedical text information retrieval systems

William R. Hersh, Aaron M. Cohen, Phoebe M. Roberts, 2009, Information Retrieval.

Evaluation of a gene information summarization system by users during the analysis process of microarray datasets

William R. Hersh, Aaron M. Cohen, Jianji Yang, 2009, BMC Bioinformatics.

Fifty Ways to Tag your Pubtypes: Multi-Tagger, a Set of Probabilistic Publication Type and Study Design Taggers to Support Biomedical Indexing and Evidence-Based Medicine

A. Cohen, N. Smalheiser, P. Das, 2021, medRxiv.

A Comparison of Techniques for Classification and Ad Hoc Retrieval of Biomedical Documents

William R. Hersh, Aaron M. Cohen, Jianji Yang, 2005, TREC.

Integrative analysis of drug response and clinical outcome in acute myeloid leukemia.

R. Collins, A. Cohen, Guanming Wu, 2022, Cancer cell.

Rule-based deduplication of article records from bibliographic databases

Clement T. Yu, Neil R. Smalheiser, Weiyi Meng, 2014, Database J. Biol. Databases Curation.

Case Report: Five-way Smoking Status Classification Using Text Hot-Spot Identification and Error-correcting Output Codes

Aaron M. Cohen, A. Cohen, 2008, J. Am. Medical Informatics Assoc..

Identifying Patients for Clinical Studies from Electronic Health Records: TREC 2012 Medical Records Track at OHSU

William R. Hersh, Steven Bedrick, Aaron M. Cohen, 2012, TREC.

A system for classifying disease comorbidity status from medical discharge summaries using automated hotspot and negated concept detection.

Kyle H. Ambert, A. Cohen, 2009, Journal of the American Medical Informatics Association : JAMIA.

Finna: A Paragraph Prioritization System for Biocuration in the Neurosciences

Gully A. P. C. Burns, M. Kemal Sönmez, Aaron M. Cohen, 2013, AAAI Fall Symposia.

k-Information Gain Scaled Nearest Neighbors: A Novel Approach to Classifying Protein-Protein Interaction-Related Documents

Kyle H. Ambert, A. Cohen, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A survey of current work in biomedical text mining

W. Hersh, A. Cohen, 2005, Briefings Bioinform..

Using co-occurrence network structure to extract synonymous gene and protein names from MEDLINE abstracts

W. Hersh, A. Cohen, C. Dubay, 2005, BMC Bioinformatics.

Barriers to Retrieving Patient Information from Electronic Health Record Data: Failure Analysis from the TREC Medical Records Track

William R. Hersh, Steven Bedrick, Aaron M. Cohen, 2012, AMIA.

The TREC 2004 genomics track categorization task: classifying full text biomedical documents

W. Hersh, A. Cohen, 2006, Journal of biomedical discovery and collaboration.

Feature Generation, Feature Selection, Classifiers, and Conceptual Drift for Biomedical Document Triage

William R. Hersh, Aaron M. Cohen, Ravi Teja Bhupatiraju, 2004, TREC.

A Large-Scale Analysis of the Reasons Given for Excluding Articles that are Retrieved by Literature Search During Systematic Review

Aaron M. Cohen, Tracy Edinger, A. Cohen, 2013, AMIA.