Y. Moreau

发表

TXTGate: profiling gene groups with text-based information

B. De Moor, Patrick Glenisson, B. Coessens, 2004, Genome Biology.

Gene prioritization through genomic data fusion

Bassem A. Hassan, B. Moor, P. Carmeliet, 2006, Nature Biotechnology.

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

Bart De Moor, Yves Moreau, Steffen Durinck, 2005, Bioinform..

Computational tools for prioritizing candidate genes: boosting disease gene discovery

Y. Moreau, L. Tranchevent, 2012, Nature Reviews Genetics.

A human phenome-interactome network of protein complexes implicated in genetic disorders

Pall I. Olason, A. G. Pedersen, S. Brunak, 2007, Nature Biotechnology.

L2-norm multiple kernel learning and its application to biomedical data fusion

Johan A. K. Suykens, Bart De Moor, Shi Yu, 2010, BMC Bioinformatics.

Gene interaction networks boost genetic algorithm performance in biomarker discovery

Johan A. K. Suykens, Bart De Moor, Yves Moreau, 2014, 2014 IEEE Symposium on Computational Intelligence in Multi-Criteria Decision-Making (MCDM).

Bayesian network analysis of resistance pathways against HIV-1 protease inhibitors.

T. Silander, D. Katzenstein, Y. Moreau, 2007, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Repurposing High-Throughput Image Assays Enables Biological Activity Prediction for Drug Discovery.

Anne E Carpenter, Yolanda T. Chong, S. Hochreiter, 2018, Cell chemical biology.

Candidate gene prioritization with Endeavour

Yves Moreau, Jan Aerts, Léon-Charles Tranchevent, 2016, Nucleic Acids Res..

Toucan: deciphering the cis-regulatory logic of coregulated genes.

B. De Moor, B. Coessens, Y. Moreau, 2003, Nucleic acids research.

Multi-view Text Mining for Disease Gene Prioritization and Clustering

B. Moor, Y. Moreau, L. Tranchevent, 2011 .

Integrating Computational Biology and Forward Genetics in Drosophila

Yves Moreau, Stein Aerts, Roland Barriot, 2009, PLoS genetics.

Comparison and meta-analysis of microarray data: from the bench to the computer desk.

B. De Moor, Y. Moreau, B. de Strooper, 2003, Trends in genetics : TIG.

Proteomics Analysis of Cytokine-induced Dysfunction and Death in Insulin-producing INS-1E Cells

K. Lage, L. Arckens, Y. Moreau, 2007, Molecular & Cellular Proteomics.

A Genetic Algorithm for Pancreatic Cancer Diagnosis

Bart De Moor, Yves Moreau, Grigorios N. Beligiannis, 2013, EANN.

Predicting disease-causing variant combinations

J. Aerts, A. Nowé, Y. Moreau, 2019, Proceedings of the National Academy of Sciences of the United States of America.

Large-scale in-silico statistical mutagenesis analysis sheds light on the deleteriousness landscape of the human proteome

Y. Moreau, M. Rooman, T. Lenaerts, 2018, Scientific Reports.

Positional gene enrichment analysis of gene sets for high-resolution identification of overrepresented chromosomal regions

Y. Moreau, F. Speleman, J. Vandesompele, 2008, Nucleic acids research.

Interactogeneous: Disease Gene Prioritization Using Heterogeneous Networks and Full Topology Scores

Alexandre P. Francisco, Joana P. Gonçalves, Y. Moreau, 2012, PloS one.

Finding the targets of a drug by integration of gene expression data with a protein interaction network.

Y. Moreau, D. Börnigen, Lieven Thorrez, 2013, Molecular bioSystems.

Cross-Species Candidate Gene Prioritization with MerKator

B. Moor, Y. Moreau, L. Tranchevent, 2011 .

Using Ribosomal Protein Genes as Reference: A Tale of Caution

I. van Mechelen, Y. Moreau, K. Marchal, 2008, PloS one.

Meander: visually exploring the structural variome using space-filling curves

Georgios A. Pavlopoulos, J. Aerts, Y. Moreau, 2013, Nucleic acids research.

Critical Assessment of Microarray Data Analysis Contest Datasets Emerald Dataset : a Microarray Experiment to Study the Relative Magnitudes of Technical and Biological Variation Talks Keynote towards Cracking the Code of Transcription and Chromatin Regulation Analysis of Comparative Genomic Hybridiz

W. Langdon, R. King, E. Segal, 2022 .

mRNA profiling of pancreatic beta-cells: investigating mechanisms of diabetes

Y. Moreau, D. Pipeleers, F. Schuit, 2006 .

Predicting disease-causing variant combinations

J. Aerts, A. Nowé, Y. Moreau, 2019, Proceedings of the National Academy of Sciences.

In vitro screening of embryos by whole-genome sequencing: now, in the future or never?

J. Aerts, Y. Moreau, J. Vermeesch, 2014, Human reproduction.

eXtasy: variant prioritization by genomic data fusion

Bart De Moor, Yves Moreau, Ryo Sakai, 2013, Nature Methods.

DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.

Manuel Corpas, Yves Moreau, Steven Van Vooren, 2009, American journal of human genetics.

Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome

Damian Smedley, Yves Moreau, Melissa Haendel, 2014, Science Translational Medicine.

Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors

Yves Moreau, Kevin P. White, Peter J. Campbell, 2017, Nature Communications.

Topic modeling of biomedical text

Jesse Davis, Yves Moreau, Jaak Simm, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Beegle: from literature mining to disease-gene discovery

Y. Moreau, L. Tranchevent, A. Ardeshirdavani, 2015, Nucleic acids research.

Kernel Data Fusion

Y. Moreau, S. ElShal, Pooya Zakeri, 2015 .

Hybrid Clustering by Integrating Text and Citation Based Graphs in Journal Database Analysis

Bart De Moor, Shi Yu, Wolfgang Glänzel, 2009, 2009 IEEE International Conference on Data Mining Workshops.

Current cancer driver variant predictors learn to recognize driver genes instead of functional variants

Y. Moreau, P. Fariselli, D. Raimondi, 2021, BMC Biology.

Estimating an In Vivo Fitness Landscape During Protease and Reverse Transcriptase Treatment from Observed Genetic Evolution to Predict Accumulation of Mutations under Selective Pressure

Yves Moreau, Kristof Theys, Anne-Mieke Vandamme, 2007 .

Gene expression Query-driven module discovery in microarray data

B. Moor, Y. Moreau, K. Marchal, 2007 .

Weighted Multiple Kernel Canonical Correlation

B. Moor, Y. Moreau, L. Tranchevent, 2011 .

Chronic lymphocytic leukemia and prolymphocytic leukemia with MYC translocations: a subgroup with an aggressive disease course

Y. Moreau, A. Hagemeijer, L. Michaux, 2012, Annals of Hematology.

Microarray screening for target genes of the proto-oncogene PLAG1

B. Moor, Janick Mathys, Y. Moreau, 2004, Oncogene.

Single-cell copy number variation detection

Y. Moreau, J. Vermeesch, T. Voet, 2011, Genome Biology.

Structure-based drug repositioning explains ibrutinib as VEGFR2 inhibitor

Melissa F. Adasme, Y. Moreau, M. Schroeder, 2019, bioRxiv.

Recognition of gene regulatory sequencesby bagging of neural

B. Moor, P. Rouzé, Y. Moreau, 2007 .

An interpretable low-complexity machine learning framework for robust exome-based in-silico diagnosis of Crohn’s disease patients

Y. Moreau, P. Fariselli, I. Cleynen, 2020, NAR genomics and bioinformatics.

Structure-based drug repositioning explains ibrutinib as VEGFR2 inhibitor

Melissa F. Adasme, Y. Moreau, M. Schroeder, 2019, bioRxiv.

Understanding mutational effects in digenic diseases

Tom Lenaerts, Yves Moreau, Andrea Gazzo, 2017, Nucleic acids research.

Insight into the protein solubility driving forces with neural attention

Piero Fariselli, Yves Moreau, Daniele Raimondi, 2020, PLoS Comput. Biol..

Peripheral Blood RNA Levels of QSOX1 and PLBD1 Are New Independent Predictors of Left Ventricular Dysfunction After Acute Myocardial Infarction

F. Van de Werf, Y. Moreau, Lu Zhang, 2019, Circulation. Genomic and precision medicine.

Structure learning of Bayesian networks with MCMC : extension to incomplete data and decision trees as local models

Bart De Moor, Olivier Gevaert, Dirk Timmerman, 2009 .

HPMPdb: A machine learning-ready database of protein molecular phenotypes associated to human missense variants

Y. Moreau, J. Schymkowitz, F. Rousseau, 2022, Current research in structural biology.

Complicated legacies: The human genome at 20

Shawneequa L. Callier, C. Rotimi, P. Ossorio, 2021, Science.

Identification of conserved modes of expression profiles during hippocampal development and neuronal differentiation in vitro

Y. Moreau, S. Aerts, B. Kamińska, 2006, Journal of neurochemistry.

Fast and accurate inference of gene regulatory networks through robust precision matrix estimation

Y. Moreau, D. Raimondi, Antoine Passemiers, 2022, Bioinformatics.

Array comparative genomic hybridization and computational genome annotation in constitutional cytogenetics: suggesting candidate genes for novel submicroscopic chromosomal imbalance syndromes

B. Moor, B. Coessens, Y. Moreau, 2007, Genetics in Medicine.

WiNGS: Widely integrated NGS platform for federated genome analysis

Y. Moreau, J. Vermeesch, A. Ardeshirdavani, 2022, bioRxiv.

Improving performance of the eXtasy model by hierarchical sampling

Jesse Davis, Bart De Moor, Yves Moreau, 2014 .

Computational Approaches to Elucidating Transient Protein-Protein Interactions, Predicting Receptor-Ligand Pairings

Y. Moreau, S. X. D. Souza, Ernesto Iacucci, 2012 .

Microarray analysis of copy number variation in single cells

G. Verbeke, Y. Moreau, J. Vermeesch, 2012, Nature Protocols.

Microarray technology in PGD

G. Verbeke, Y. Moreau, J. Vermeesch, 2010 .

Estimating random forest feature importance using a genetic algorithm approach

Bart De Moor, Yves Moreau, Charalampos N. Moschopoulos, 2014 .

Next Generation Genetic Tests: from artisan genetic testing to uniform, streamlined, fully quality assured and automated processing of genetic tests using Next Generation Sequencing

Yves Moreau, Liesbet Vliegen, Harry Cuppens Harry, 2010 .

Comparison of algorithms for high-resolution array CGH.

Yves Moreau, Francesca Martella, Bernard Thienpont, 2007 .

Crack down on genomic surveillance

Y. Moreau, 2019, Nature.

WiNGS: Widely integrated NGS platform for federated genome analysis

Y. Moreau, J. Vermeesch, A. Ardeshirdavani, 2022, bioRxiv.

Industry-Scale Orchestrated Federated Learning for Drug Discovery

Lewis H. Mervin, Adam Arany, Y. Moreau, 2022, ArXiv.

Candidate gene prioritization by network analysis of differential expression using machine learning approaches

Bart De Moor, Yves Moreau, Joana P. Gonçalves, 2010, BMC Bioinformatics.

Emerging patterns of cryptic chromosomal imbalances in patients with idiopathic mental retardation and multiple congenital anomalies

Y. Moreau, K. Devriendt, G. Mortier, 2006 .

TRACE: Tennessee Research and Creative TRACE: Tennessee Research and Creative Exchange Exchange Bridging the gap between systems biology and medicine Bridging the gap between systems biology and medicine

Devdatt P. Dubhashi, David M. Rocke, C. Auffray, 2022 .

Chromosomal rearrangements arise at high frequency during early human embryogenesis

G. Verbeke, Y. Moreau, J. Vermeesch, 2008 .

Multiple Sclerosis Data Alliance - A global multi-stakeholder collaboration to scale-up real world data research.

Y. Moreau, P. Vermersch, B. Uitdehaag, 2020, Multiple sclerosis and related disorders.

Industry-Scale Orchestrated Federated Learning for Drug Discovery

Lewis H. Mervin, Y. Moreau, A. Schuffenhauer, 2022, AAAI.

Detection of cis-acting regulatory elements in plants: a Gibbs sampling approach

Kathleen Marchal, Bart De Moor, Stephane Rombauts, 2000 .

Recognition of gene regulatory sequences by bagging of neural networks

Stephane Rombauts, Pierre Rouzé, Yves Moreau, 1999 .

Microarray analysis reveals abnormal chromosomal complements in over 70% of 14 normally developing human embryos.

Y Moreau, Y. Moreau, J. Vermeesch, 2013, Human reproduction.

From hype to reality: data science enabling personalized medicine

Holger Fröhlich, Thomas Lengauer, Blaz Zupan, 2018, BMC Medicine.

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences

Kathleen Marchal, Stephane Rombauts, Yves Van de Peer, 2002, Nucleic Acids Res..

Breakage–fusion–bridge cycles leading to inv dup del occur in human cleavage stage embryos

Y. Moreau, J. Vermeesch, Niels Van der Aa, 2011, Human mutation.

Fast semi-supervised discriminant analysis for binary classification of large data-sets

Yves Moreau, Jörg K. Wegner, Karl Meerbergen, 2017, Pattern Recognit..

Bioinformatics: Organisms from Venus, Technology from Jupiter, Algorithms from Mars

Kathleen Marchal, Bart De Moor, Yves Moreau, 2003, Eur. J. Control.

Using literature and data to learn Bayesian networks as clinical models of ovarian tumors

Bart De Moor, Dirk Timmerman, Yves Moreau, 2004, Artif. Intell. Medicine.

Emerging patterns of cryptic chromosomal imbalance in patients with idiopathic mental retardation and multiple congenital anomalies: a new series of 140 patients and review of published reports

G Mortier, Y Moreau, B De Moor, 2006, Journal of Medical Genetics.

PINTA: a web server for network-based gene prioritization from expression data

Yves Moreau, Joana P. Gonçalves, Sara C. Madeira, 2011, Nucleic Acids Res..

Network Analysis of Differential Expression for the Identification of Disease-Causing Genes

Yves Moreau, Lieven Thorrez, Léon-Charles Tranchevent, 2009, PloS one.

Chromosome instability is common in human cleavage-stage embryos

Geert Verbeke, Yves Moreau, Miikka Vikkula, 2009, Nature Medicine.

Heterozygous missense mutations in SMARCA2 cause Nicolaides-Baraitser syndrome

Yves Moreau, Gabriele Gillessen-Kaesbach, Dagmar Wieczorek, 2012, Nature Genetics.

A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling

Kathleen Marchal, Bart De Moor, Stephane Rombauts, 2001, Bioinform..

The genetic heterogeneity and mutational burden of engineered melanomas in zebrafish models

Yves Moreau, Jeroen de Ridder, Keiran Raine, 2013, Genome Biology.

Ultra-fast global homology detection with Discrete Cosine Transform and Dynamic Time Warping

Yves Moreau, Daniele Raimondi, Gabriele Orlando, 2018, Bioinform..

Single-cell paired-end genome sequencing reveals structural variation per cell cycle

M. Stratton, P. Futreal, P. Campbell, 2013, Nucleic acids research.

Challenges of Interpreting Copy Number Variation in Syndromic and Non-Syndromic Congenital Heart Defects

Y. Moreau, L. Tranchevent, K. Devriendt, 2011, Cytogenetic and Genome Research.

GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks

Yves Moreau, Carmen Bravo González-Blas, Jaak Simm, 2018, Bioinform..

Improved detection of chromosomal abnormalities in chronic lymphocytic leukemia by conventional cytogenetics using CpG oligonucleotide and interleukin‐2 stimulation: A Belgian multicentric study

Y. Moreau, F. Speleman, A. Hagemeijer, 2009, Genes, chromosomes & cancer.

Detection of novel 3' untranslated region extensions with 3' expression microarrays

Yves Moreau, Lieven Thorrez, Frans Schuit, 2010, BMC Genomics.

Unraveling genomic variation from next generation sequencing data

Reinhard Schneider, Yves Moreau, Georgios A. Pavlopoulos, 2013, BioData Mining.

Expressive Graph Informer Networks

Edward De Brouwer, Yves Moreau, Jaak Simm, 2019, LOD.

Two‐level preconditioning for Ridge Regression

Yves Moreau, Karl Meerbergen, Jaak Simm, 2018, Numer. Linear Algebra Appl..

Graph Informer Networks for Molecules pdf

Edward De Brouwer, Yves Moreau, Adam Arany, 2019, ArXiv.

Multilevel preconditioning for Ridge Regression pdf

Yves Moreau, Karl Meerbergen, Jaak Simm, 2018, ArXiv.

Genome-Wide Copy Number Variation Scan Identifies Complement Component C4 as Novel Susceptibility Gene for Crohn's Disease

Y. Moreau, J. Vermeesch, C. Robberecht, 2016, Inflammatory bowel diseases.

Congenital heart defects in a novel recurrent 22q11.2 deletion harboring the genes CRKL and MAPK1

Y. Moreau, L. Tranchevent, K. Devriendt, 2012, American journal of medical genetics. Part A.

ModuleMiner - improved computational detection of cis-regulatory modules: are there different modes of gene regulation in embryonic development and adult tissues?

Yves Moreau, Stein Aerts, Bart De Moor, 2008, Genome Biology.

A genetic algorithm for the detection of new cis-regulatory modules in sets of coregulated genes

Bart De Moor, Yves Moreau, Stein Aerts, 2004, Bioinform..

Computational detection of cis-regulatory modules

Bart De Moor, Yves Moreau, Stein Aerts, 2003, ECCB.

Large-scale in-silico statistical mutagenesis analysis sheds light on the deleteriousness landscape of the human proteome

Y. Moreau, M. Rooman, T. Lenaerts, 2018, Scientific Reports.

Comparison of aggregation methods for multiphenotype exomic variant prioritization

J. Aerts, B. De Moor, Y. Moreau, 2016, bioRxiv.

Problems with the nested granularity of feature domains in bioinformatics: the eXtasy case

Bart De Moor, Jesse Davis, Yves Moreau, 2015, BMC Bioinformatics.

eXtasy simplified-towards opening the black box

Bart De Moor, Yves Moreau, Dusan Popovic, 2013, 2013 IEEE International Conference on Bioinformatics and Biomedicine.

Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease

Yves Moreau, Ryo Sakai, Georgios A. Pavlopoulos, 2012, Genome Medicine.

Comprehensive analysis of the base composition around the transcription start site in Metazoa

Yves Moreau, Michal Dabrowski, Stein Aerts, 2004, BMC Genomics.

Mapping biomedical concepts onto the human genome by mining literature on chromosomal aberrations

Bart De Moor, Yves Moreau, Joris Vermeesch, 2007, Nucleic acids research.

Protein‐induced changes during the maturation process of human dendritic cells: A 2‐D DIGE approach

K. Lage, C. Workman, Y. Moreau, 2008, Proteomics. Clinical applications.

Drug repositioning or target repositioning: A structural perspective of drug-target-indication relationship for available repurposed drugs

Yves Moreau, Michael Schroeder, Daniele Parisi, 2020, Computational and structural biotechnology journal.

Interphase fluorescence in situ hybridization on selected plasma cells is superior in the detection of cytogenetic aberrations in plasma cell dyscrasia

Y. Moreau, A. Hagemeijer, L. Michaux, 2010, Genes, chromosomes & cancer.

Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks

Bart De Moor, Olivier Gevaert, Dirk Timmerman, 2006, ISMB.

An experimental loop design for the detection of constitutional chromosomal aberrations by array CGH

Bart De Moor, Yves Moreau, Joris Robert Vermeesch, 2009, BMC Bioinformatics.

DECIPHER : D atabas e of C hromosomal I mbalance and P henotype in H umans Using E nsembl R esources

N. Carter, Y. Moreau, H. Firth, 2009 .

HiVA: an integrative wet- and dry-lab platform for haplotype and copy number analysis of single-cell genomes

Yves Moreau, Jan Aerts, Alejandro Sifrim, 2019, bioRxiv.

Concurrent whole-genome haplotyping and copy-number profiling of single cells.

Yves Moreau, Eric Legius, Masoud Zamani Esteki, 2015, American journal of human genetics.

ReLiance: a machine learning and literature-based prioritization of receptor—ligand pairings

Bart De Moor, Reinhard Schneider, Yves Moreau, 2012, Bioinform..

SparseChem: Fast and accurate machine learning model for small molecules

Y. Moreau, J. Simm, A. Arany, 2022, ArXiv.

Multilevel Gibbs Sampling for Bayesian Regression pdf

Yves Moreau, Karl Meerbergen, Jaak Simm, 2020, ArXiv.

Macau: Scalable Bayesian factorization with high-dimensional side information using MCMC

Yves Moreau, Jörg K. Wegner, Vladimir I. Chupakhin, 2017, 2017 IEEE 27th International Workshop on Machine Learning for Signal Processing (MLSP).

Single-cell chromosomal imbalances detection by array CGH

Yves Moreau, Jean-Pierre Fryns, Bernard Thienpont, 2006, Nucleic acids research.

Genome-wide copy number profiling of single cells in S-phase reveals DNA-replication domains

Yves Moreau, Eftychia Dimitriadou, Thierry Voet, 2013, Nucleic acids research.

TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis

Bart De Moor, Yves Moreau, Stein Aerts, 2005, Nucleic Acids Res..

Adaptive quality-based clustering of gene expression profiles

Kathleen Marchal, Bart De Moor, Yves Moreau, 2002, Bioinform..

Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications.

Thomas Altmann, Yves Moreau, Hans Lehrach, 2004, Genome research.

Optimized Data Fusion for Kernel k-Means Clustering

Johan A. K. Suykens, Bart De Moor, Shi Yu, 2012, IEEE Transactions on Pattern Analysis and Machine Intelligence.

A Gibbs sampling method to detect over-represented motifs in the upstream regions of co-expressed genes

Kathleen Marchal, Bart De Moor, Stephane Rombauts, 2001, RECOMB.

pBRIT: gene prioritization by correlating functional and phenotypic annotations through integrative data fusion

Yves Moreau, Kris Laukens, Amin Ardeshirdavani, 2018, Bioinform..

Concordance of gene expression in human protein complexes reveals tissue specificity and pathology

Yves Moreau, Søren Brunak, Lieven Thorrez, 2013, Nucleic acids research.

A guide to web tools to prioritize candidate genes

Bart De Moor, Patrick De Causmaecker, Yves Moreau, 2011, Briefings Bioinform..

Collaboratively charting the gene-to-phenotype network of human congenital heart defects

Yves Moreau, Marc Gewillig, Roland Barriot, 2010, Genome Medicine.

Endeavour update: a web resource for gene prioritization in multiple species

Bart De Moor, Shi Yu, Yves Moreau, 2008, Nucleic Acids Res..

Autosomal-dominant microtia linked to five tandem copies of a copy-number-variable region at chromosome 4p16.

N. Carter, H. Fiegler, D. Vetrie, 2008, American Journal of Human Genetics.

A Hybrid Approach to Feature Ranking for Microarray Data Classification

Bart De Moor, Yves Moreau, Charalampos N. Moschopoulos, 2013, EANN.

A Simple Genetic Algorithm for Biomarker Mining

Bart De Moor, Yves Moreau, Georgios A. Pavlopoulos, 2012, PRIB.

The t(4;8) is mediated by homologous recombination between olfactory receptor gene clusters, but other 4p16 translocations occur at random.

S. van Vooren, Y. Moreau, K. Devriendt, 2007, Genetic counseling.

Highlights from the 11th ISCB Student Council Symposium 2015

Giovanni Felici, Farzana Rahman, M. Michael Gromiha, 2016, BMC Bioinformatics.

Gene prioritization using Bayesian matrix factorization with genomic and phenotypic side information

Yves Moreau, Jaak Simm, Sarah ElShal, 2018, Bioinform..

arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays

Bart De Moor, Yves Moreau, Jo Vandesompele, 2005, BMC Bioinformatics.

Haploinsufficiency of TAB2 causes congenital heart defects in humans.

Y. Moreau, P. Van Loo, L. Tranchevent, 2010, American journal of human genetics.

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Tapio Salakoski, Paolo Fontana, Silvio C. E. Tosatto, 2016, Genome Biology.

Editorial: Towards genome interpretation: Computational methods to model the genotype-phenotype relationship

Y. Moreau, P. Fariselli, D. Raimondi, 2022, Frontiers in Bioinformatics.

Benchmarking the CATMA Microarray. A Novel Tool forArabidopsis Transcriptome Analysis1[w]

Yves Moreau, Pierre Hilson, Joke Allemeersch, 2005, Plant Physiology.

Linking drug target and pathway activation for effective therapy using multi-task learning

Y. Moreau, G. V. van Westen, J. Saez-Rodriguez, 2018, Scientific Reports.

Towards practical privacy-preserving genome-wide association study

Y. Moreau, F. Vercauteren, J. Simm, 2018, BMC Bioinformatics.

An unbiased evaluation of gene prioritization tools

Bart De Moor, Patrick De Causmaecker, Yves Moreau, 2012, Bioinform..

Genomics: Transcript Profiling and Reverse Genetics Applications Functional Arabidopsis Versatile Gene-Specific Sequence Tags for

Y. Moreau, H. Lehrach, M. Crowe, 2007 .

L n -norm Multiple Kernel Learning and Least Squares Support Vector Machines

Bart De Moor, Shi Yu, Yves Moreau, 2011 .

Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text mining

Bart De Moor, Shi Yu, Yves Moreau, 2008, ECCB.

Kernel-based data fusion for gene prioritization

Tijl De Bie, Yves Moreau, Léon-Charles Tranchevent, 2007, ISMB/ECCB.

In silico prediction of in vitro protein liquid-liquid phase separation experiments outcomes with multi-head neural attention

Yves Moreau, Frederic Rousseau, Daniele Raimondi, 2021, Bioinform..

INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif Sampling

Kathleen Marchal, Bart De Moor, Stephane Rombauts, 2002, Bioinform..

Detecting cis-regulatory binding sites for cooperatively binding proteins

Yves Moreau, Bart De Moor, Liesbeth van Oeffelen, 2008, Nucleic acids research.

Large-scale benchmark of Endeavour using MetaCore maps

Yves Moreau, Sven Schuierer, Léon-Charles Tranchevent, 2010, Bioinform..

Gene sets enrichment analysis of chromosomal regions

Y. Moreau, F. Speleman, J. Vandesompele, 2008 .

Mutual inhibition among postmitotic neurons regulates robustness of brain wiring in Drosophila

Bassem A. Hassan, Marion Langen, D. Schmucker, 2013, eLife.

Gene prioritization through geometric-inspired kernel data fusion

Yves Moreau, Sarah ElShal, Pooya Zakeri, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Protein fold recognition using geometric kernel data fusion

Yves Moreau, Raf Vandebril, Pooya Zakeri, 2014, Bioinform..

Kernel-based Data Fusion for Machine Learning - Methods and Applications in Bioinformatics and Text Mining

Bart De Moor, Shi Yu, Yves Moreau, 2009, Studies in Computational Intelligence.

Gene prioritization and clustering by multi-view text mining

Bart De Moor, Shi Yu, Yves Moreau, 2010, BMC Bioinformatics.

INCLUSive: a web portal and service registry for microarray and regulatory sequence analysis

Kathleen Marchal, Bart De Moor, Yves Moreau, 2003, Nucleic Acids Res..

Towards Better Prioritization of Epigenetically Modified DNA Regions

Bart De Moor, Yves Moreau, Georgios A. Pavlopoulos, 2012, SETN.

Bayesian applications of belief networks and multilayer perceptrons for ovarian tumor classification with rejection

Bart De Moor, Dirk Timmerman, Yves Moreau, 2003, Artif. Intell. Medicine.

Gene profiling of hippocampal neuronal culture

Yves Moreau, Michal Dabrowski, Stein Aerts, 2003, Journal of neurochemistry.

BMPR1A is a candidate gene for congenital heart defects associated with the recurrent 10q22q23 deletion syndrome.

Y. Moreau, L. Tranchevent, K. Devriendt, 2012, European journal of medical genetics.

Cluster analysis of microarray data

Kathleen Marchal, Yves Moreau, Filip De Smet, 2004 .

GRU-ODE-Bayes: Continuous modeling of sporadically-observed time series

Edward De Brouwer, Yves Moreau, Adam Arany, 2019, NeurIPS.

GENESTAT: an information portal for design and analysis of genetic association studies

Yves Moreau, Kristel Van Steen, Keith Humphreys, 2009, European Journal of Human Genetics.

Longitudinal machine learning modeling of MS patient trajectories improves predictions of disability progression

Ludwig Kappos, Edward De Brouwer, Thijs Becker, 2021, Comput. Methods Programs Biomed..

Natural Lipid Extracts as an Artificial Membrane for Drug Permeability Assay: In Vitro and In Silico Characterization

Y. Moreau, G. Balogh, A. Arany, 2023, Pharmaceutics.

Advances in Cluster Analysis of Microarray Data

Kathleen Marchal, Bart De Moor, Yves Moreau, 2005, Data Analysis and Visualization in Genomics and Proteomics.

NGS-Logistics: federated analysis of NGS sequence variants across multiple locations

Y. Moreau, J. Vermeesch, L. Dehaspe, 2014, Genome Medicine.

Computational identification of prion-like RNA-binding proteins that form liquid phase-separated condensates

Yves Moreau, Daniele Raimondi, Gabriele Orlando, 2019, Bioinform..

A novel method for data fusion over entity-relation graphs and its application to protein-protein interaction prediction

Yves Moreau, Daniele Raimondi, Jaak Simm, 2021, Bioinform..

An ontology describing congenital heart defects data

Charalampos N. Moschopoulos, Charalampos Moschopoulos, Jeroen Breckpot, 2013 .

Biclustering microarray data by Gibbs sampling

Bart De Moor, Yves Moreau, Qizheng Sheng, 2003, ECCB.

ESHG warns against misuses of genetic tests and biobanks for discrimination purposes

Y. Moreau, M. Genuardi, F. Forzano, 2021, European Journal of Human Genetics.

Methylome analysis for spina bifida shows SOX18 hypomethylation as a risk factor with evidence for a complex (epi)genetic interplay to affect neural tube development

Y. Moreau, K. Jansen, K. Freson, 2016, Clinical Epigenetics.

DNA methylation analysis of Homeobox genes implicates HOXB7 hypomethylation as risk factor for neural tube defects

Y. Moreau, D. Lambrechts, K. Jansen, 2015, Epigenetics.

Rayleigh Quotient-Type Problems in Machine Learning

Bart De Moor, Yves Moreau, Léon-Charles Tranchevent, 2011 .

Trace: Tennessee Research and Creative Exchange

Gilles Clermont, Yves Moreau, Charles Auff, 2009 .

Topological Graph Neural Networks

Karsten M. Borgwardt, K. Borgwardt, Y. Moreau, 2021, ICLR.

Predicting receptor-ligand pairs through kernel learning

Bart De Moor, Yves Moreau, Ernesto Iacucci, 2011, BMC Bioinformatics.

Towards Better Receptor-Ligand Prioritization: How Machine Learning on Protein-Protein Interaction Data Can Provide Insight Into Receptor-Ligand Pairs

Yves Moreau, Ernesto Iacucci, Y. Moreau, 2010, ICANN.

BMPR 1 A is a candidate gene for congenital heart defects associated with the recurrent 10 q 22 q 23 deletion syndrome

Y. Moreau, L. Tranchevent, K. Devriendt, 2012 .

Repurposed high-throughput images enable biological activity prediction for drug discovery

Anne E Carpenter, Yves Moreau, Anne E. Carpenter, 2017, bioRxiv.

CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes

Yves Moreau, Martin Kuiper, Philippe Reymond, 2007, BMC Bioinformatics.

Self-Labeling of Fully Mediating Representations by Graph Alignment

Yves Moreau, Jaak Simm, Adam Arany, 2021, BNAIC/BENELEARN.

Inferring Causal Dependencies between Chaotic Dynamical Systems from Sporadic Time Series

Edward De Brouwer, Yves Moreau, Jaak Simm, 2020 .

Latent Convergent Cross Mapping

Edward De Brouwer, Yves Moreau, Jaak Simm, 2021, ICLR.

Weighted hybrid clustering by combining text mining and bibliometrics on a large-scale journal database

Bart De Moor, Shi Yu, Wolfgang Glänzel, 2010, J. Assoc. Inf. Sci. Technol..

Updated Results of the COVID-19 in MS Global Data Sharing Initiative

Y. Moreau, V. Prčkovska, G. Comi, 2022, Neurology: Neuroimmunology & Neuroinflammation.

From genotype to phenotype in Arabidopsis thaliana: in-silico genome interpretation predicts 288 phenotypes from sequencing data

Y. Moreau, P. Fariselli, Massimiliano Corso, 2021, Nucleic acids research.

Bridging the gap between systems biology and medicine

Gilles Clermont, Charles Auffray, Yves Moreau, 2009, Genome Medicine.

ECCB 2018: The 17th European Conference on Computational Biology

Yves Moreau, Artemis G. Hatzigeorgiou, Christoforos Nikolaou, 2018, Bioinform..

ECCB 2014: The 13th European Conference on Computational Biology

Yves Moreau, Marie-Dominique Devignes, Y. Moreau, 2014, Bioinform..

Yves Moreau and Jaap Heringa, on behalf of the ECCB10 organizing and steering committees

Yves Moreau, Jaap Heringa, Y. Moreau, 2010, Bioinformatics.

Modelled in vivo HIV Fitness under drug Selective Pressure and Estimated Genetic Barrier Towards Resistance are Predictive for Virological Response

Yves Moreau, Kristof Theys, Anne-Mieke Vandamme, 2008, Antiviral therapy.

COVID-19 in people with multiple sclerosis: A global data sharing initiative

Yves Moreau, Richard Nicholas, Amber Salter, 2020, Multiple sclerosis.

Exploring the limitations of biophysical propensity scales coupled with machine learning for protein sequence analysis

Yves Moreau, Daniele Raimondi, Gabriele Orlando, 2019, Scientific Reports.

Proteome analysis demonstrates profound alterations in human dendritic cell nature by TX527, an analogue of vitamin D

K. Lage, C. Workman, Y. Moreau, 2009, Proteomics.

ChemGrapher: Optical Graph Recognition of Chemical Compounds by Deep Learning

Yves Moreau, Jaak Simm, Adam Arany, 2020, J. Chem. Inf. Model..

Longitudinal modeling of MS patient trajectories improves predictions of disability progression pdf

Edward De Brouwer, Thijs Becker, Yves Moreau, 2020, ArXiv.

Splitting chemical structure data sets for federated privacy-preserving machine learning

Y. Moreau, A. Schuffenhauer, J. Simm, 2021 .

Clinical population genetic analysis of variants in the SARS-CoV-2 receptor ACE2

Y. Moreau, Guangdi Li, A. Ardeshirdavani, 2020, medRxiv.

Query-driven module discovery in microarray data

Kathleen Marchal, Bart De Moor, Yves Moreau, 2007, Bioinform..

PyUUL provides an interface between biological structures and deep learning algorithms

Y. Moreau, F. Rousseau, Ramon Duran-Romaña, 2022, Nature communications.

regionsfor detection of mRNA expression imbalance Expression imbalance map: a new visualization

S. Ishikawa, Kunihiro Nishimura, H. Aburatani, 2015 .

Estimation of an in vivo fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatment

Yves Moreau, Anne-Mieke Vandamme, Ricardo Camacho, 2008, Bioinform..

Splitting chemical structure data sets for federated privacy-preserving machine learning

Bernd Beck, Yves Moreau, Jaak Simm, 2021 .

Nonlinear data fusion over Entity–Relation graphs for Drug–Target Interaction prediction

Y. Moreau, P. Fariselli, D. Raimondi, 2023, Bioinformatics.

Highly Scalable Tensor Factorization for Prediction of Drug-Protein Interaction Type

Yves Moreau, Hugo Ceulemans, Jaak Simm, 2015, NIPS 2015.

Macau: Scalable Bayesian Multi-relational Factorization with Side Information using MCMC

Yves Moreau, Hugo Ceulemans, Jaak Simm, 2015, 1509.04610.

Weakly Supervised Knowledge Transfer with Probabilistic Logical Reasoning for Object Detection

Y. Moreau, A. Arany, M. Oldenhof, 2023, ICLR.

Text-Based Gene Profiling with Domain-Specific Views

Bart De Moor, Yves Moreau, Patrick Glenisson, 2003, SWDB.

Functional bioinformatics of microarray data: from expression to regulation

Kathleen Marchal, Yves Moreau, Gert Thijs, 2002, Proc. IEEE.

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

B. Moor, S. Durinck, A. Brazma, 2005, Bioinform..

Hybrid Clustering of Text Mining and Bibliometrics Applied to Journal Sets

Bart De Moor, Shi Yu, Wolfgang Glänzel, 2009, SDM.

Biological knowledge bases using Wikis: combining the flexibility of Wikis with the structure of databases

Yves Moreau, Roland Barriot, Sylvain Brohée, 2010, Bioinform..

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

B. Moor, S. Durinck, A. Brazma, 2005 .

Easy Hyperparameter Search Using Optunity pdf

Bart De Moor, Yves Moreau, Dusan Popovic, 2014, ArXiv.

Evaluation of the Vector Space Representation in Text-Based Gene Clustering

Bart De Moor, Yves Moreau, Peter Antal, 2002, Pacific Symposium on Biocomputing.

Extended Bayesian Regression Models: A Symbiotic Application of Belief Networks and Multilayer Perceptrons for the Classification of Ovarian Tumors

B. Moor, J. Vandewalle, D. Timmerman, 2001, AIME.

Galahad: a web server for drug effect analysis from gene expression

Yves Moreau, Griet Laenen, Lieven Thorrez, 2015, Nucleic Acids Res..

Highlights from the eleventh ISCB Student Council Symposium 2015

Dan F. DeBlasio, Sean J. Humphrey, P. Bertolazzi, 2016 .

A Comprehensive Comparison of Two MEDLINE Annotators for Disease and Gene Linkage: Sometimes Less is More

Jesse Davis, Yves Moreau, Jaak Simm, 2016, IWBBIO.

Mining therapeutic insights from large scale drug screenings with transfer learning

Yves Moreau, Mi Yang, Julio Saez-Rodriguez, 2017, bioRxiv.

Probabilistic Graphical Models for Computational Biomedicine

P Antal, Y Moreau, G Fannes, 2003, Methods of Information in Medicine.

Splitting chemical structure data sets for federated privacy-preserving machine learning

Y. Moreau, A. Schuffenhauer, J. Simm, 2021, Journal of Cheminformatics.

YTPdb: a wiki database of yeast membrane transporters.

Yves Moreau, Roland Barriot, Sylvain Brohée, 2010, Biochimica et biophysica acta.

ACE-inhibition induces a cardioprotective transcriptional response in the metabolic syndrome heart

B. De Moor, Y. Moreau, P. Callaerts, 2018, Scientific Reports.

Combined mRNA microarray and proteomic analysis of eutopic endometrium of women with and without endometriosis.

B. Moor, B. De Moor, Y. Moreau, 2012, Human reproduction.

Estimating the Relative Contribution of dNTP Pool Imbalance and APOBEC3G/3F Editing to HIV Evolution In Vivo

Yves Moreau, Anne-Mieke Vandamme, Beth Shapiro, 2007, J. Comput. Biol..

A Self-Tuning Genetic Algorithm with Applications in Biomarker Discovery

Bart De Moor, Yves Moreau, Ryo Sakai, 2014, 2014 IEEE 27th International Symposium on Computer-Based Medical Systems.

Viva Europa, a Land of Excellence in Research and Innovation for Health and Wellbeing

A. D. Meglio, L. Hood, T. Bourgeron, 2017 .

Computational tools for prioritizing candidate genes: boosting disease gene discovery

Y. Moreau, L. Tranchevent, 2012, Nature Reviews Genetics.

Finding the targets of a drug by integration of gene expression data with a protein interaction network.

Y. Moreau, Lieven Thorrez, Griet Laenen, 2013, Molecular bioSystems.

European Mathematical Genetics Meeting, Heidelberg, Germany, 12th–13th April 2007

Bassem A. Hassan, B. Moor, P. Carmeliet, 2007 .

Deciphering cis-acting regulatory elements in plant and drosophila promoter sequences

P. Rouzé, Y. Moreau, G. Thijs, 2002 .

Integrating quality-based clustering of microarray data with Gibbs sampling for the discovery of regulatory motifs

Kathleen Marchal, Bart De Moor, Stephane Rombauts, 2002 .

Network-Based Disease Candidate Gene Prioritization: Towards Global Diffusion in Heterogeneous Association Networks

Yves Moreau, Joana P. Gonçalves, Sara C. Madeira, 2010, NyNaK.

Haploinsufficiency of TAB2 causes congenital heart defects in humans.

Y. Moreau, P. Van Loo, L. Tranchevent, 2010, American journal of human genetics.

Towards practical privacy-preserving genome-wide association study

Frederik Vercauteren, Yves Moreau, Jaak Simm, 2018, BMC Bioinformatics.

Privacy-Preserving Genome-Wide Association Study is Practical

Frederik Vercauteren, Yves Moreau, Jaak Simm, 2017, IACR Cryptol. ePrint Arch..

Improved detection of chromosomal abnormalities in chronic lymphocytic leukemia by conventional cytogenetics using CpG oligonucleotide and interleukin‐2 stimulation: A Belgian multicentric study

Y. Moreau, F. Speleman, A. Hagemeijer, 2009, Genes, chromosomes & cancer.

Computational Approaches to Elucidating Transient Protein-Protein Interactions, Predicting Receptor-Ligand Pairings

Y. Moreau, S. X. D. Souza, Ernesto Iacucci, 2012 .

The Aquila Digital Community The Aquila Digital Community

Silvio C. E. Tosatto, Karin M. Verspoor, David A. Lee, 2022 .

Applying Kernel Methods on Protein Complexes Detection Problem

Yves Moreau, Charalampos N. Moschopoulos, Griet Laenen, 2012, EANN.

Drug repositoning or target repositioning: a structural perspective of drug-target-indication relationship for available repurposed drugs

Yves Moreau, Daniele Parisi, Melissa Francisca Adasme, 2019, bioRxiv.

Linking drug target and pathway activation for effective therapy using multi-task learning

Yves Moreau, Julio Saez-Rodriguez, Mi Yang, 2018, Scientific Reports.

INTEGRATION OF CLINICAL AND MICROARRAY DATA USING BAYESIAN NETWORKS

Bart De Moor, Olivier Gevaert, Dirk Timmerman, 2006 .