J. Bedő

发表

Feature Selection via Dependence Maximization

Le Song, Alexander J. Smola, Arthur Gretton, 2012, J. Mach. Learn. Res..

Multivariate spearman's ρ for aggregating ranks using copulas

Cheng Soon Ong, J. Bedő, 2016 .

Gene selection via the BAHSIC family of algorithms

Le Song, Alexander J. Smola, Arthur Gretton, 2007, ISMB/ECCB.

Supervised feature selection via dependence estimation

Le Song, Alexander J. Smola, Arthur Gretton, 2007, ICML '07.

Development and validation of a gene expression tumour classifier for cancer of unknown primary

R. Tothill, D. Bowtell, J. Bedő, 2015, Pathology.

A blood-based predictor for neocortical Aβ burden in Alzheimer’s disease: results from the AIBL study

H. Kiiveri, C. Rowe, N. Faux, 2014, Molecular Psychiatry.

Blood-based protein biomarkers for diagnosis of Alzheimer disease.

Justin Bedo, David Ames, Christopher C Rowe, 2012, Archives of neurology.

Stability of Bivariate GWAS Biomarker Detection

Cheng Soon Ong, Benjamin Goudey, Justin Bedő, 2014, PloS one.

Ovarian carcinosarcoma genomics and pre-clinical models highlight the N-MYC pathway as a key driver and susceptibility to EMT-targeting therapy

N. Traficante, A. deFazio, D. Bowtell, 2020, bioRxiv.

RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements

J. Bedő, V. Laudet, Florence d'Alché-Buc, 2015, Nucleic acids research.

GPU enables routine bivariate & trivariate analysis of Case-Control GWAS

Cheng Soon Ong, Adam Kowalczyk, Benjamin Goudey, 2014 .

Integrating deep mutational scanning and low-throughput mutagenesis data to predict the impact of amino acid variants

Alan F. Rubin, J. Bedő, A. Papenfuss, 2022, bioRxiv.

PPFA: Privacy Preserving Fog-Enabled Aggregation in Smart Grid

Marimuthu Palaniswami, Lingjuan Lyu, Jiong Jin, 2018, IEEE Transactions on Industrial Informatics.

An Efficient Alternative to SVM Based Recursive Feature Elimination with Applications in Natural Language Processing and Bioinformatics

Conrad Sanderson, Adam Kowalczyk, Justin Bedo, 2006, Australian Conference on Artificial Intelligence.

Letter: improved parsimony of genetic risk scores for coeliac disease through refined HLA modelling

J. Bedő, P. Kwan, E. Skafidas, 2021, Alimentary pharmacology & therapeutics.

Improved HLA-based prediction of coeliac disease identifies two novel genetic interactions

J. Bedő, P. Kwan, E. Skafidas, 2020, European Journal of Human Genetics.

Improved HLA-based prediction of coeliac disease identifies two novel HLA risk modifiers, DQ6.2 and DQ7.3

J. Bedő, P. Kwan, E. Skafidas, 2019, bioRxiv.

Microarray Design Using the Hilbert-Schmidt Independence Criterion

Justin Bedo, J. Bedő, 2008, PRIB.

Stratification bias in low signal microarray studies

Simon Günter, Justin Bedo, Brian J. Parker, 2007, BMC Bioinformatics.

Blood-Borne Amyloid-β Dimer Correlates with Clinical Markers of Alzheimer's Disease

C. Rowe, N. Faux, J. Bedő, 2010, The Journal of Neuroscience.

MTOR signaling orchestrates stress-induced mutagenesis, facilitating adaptive evolution in cancer

David M. Thomas, David R. Croucher, J. Blay, 2020, Science.

Ductal variant prostate carcinoma is associated with a significantly shorter metastasis-free survival.

D. Webb, J. Bedő, D. Agarwal, 2021, European journal of cancer.

svaRetro and svaNUMT: modular packages for annotating retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data

Daniel L. Cameron, J. Bedő, D. Cameron, 2021, bioRxiv.

Development of a histology-guided gene expression tumor classifier for cancer of unknown primary (CUP).

R. Tothill, D. Bowtell, J. Bedő, 2014 .

Precision-mapping and statistical validation of quantitative trait loci by machine learning

Adam Kowalczyk, Justin Bedo, Peter Wenzl, 2008, BMC Genetics.

The Poisson Margin Test for Normalization-Free Significance Analysis of NGS Data

Adam Kowalczyk, Justin Bedo, Thomas C. Conway, 2011, J. Comput. Biol..

Genome annotation test with validation on transcription start site and ChIP-Seq for Pol-II binding data

Adam Kowalczyk, Justin Bedo, J. Bedő, 2011, Bioinform..

A distinct DNA methylation signature defines pediatric pre-B cell acute lymphoblastic leukemia

J. Bedő, N. Wong, R. Saffery, 2012, Epigenetics.

Unifying package managers, workflow engines, and containers: Computational reproducibility with BioNix

Justin Bedő, Leon Di Stefano, Anthony T Papenfuss, 2020, GigaScience.

From a large-scale genomic analysis of insertion sequences to insights into their regulatory roles in prokaryotes

J. Bedő, E. Talla, Sébastien Tempel, 2022, BMC Genomics.

The BAHSIC family of gene selection algorithms

Arthur Gretton, Karsten M. Borgwardt, Justin Bedo, 2006 .

Blood-Derived Extracellular Vesicle-Associated miR-3182 Detects Non-Small Cell Lung Cancer Patients

J. Bedő, S. Lakhani, N. Cloonan, 2022, Cancers.

CIS calibrates GM-CSF signalling strength to regulate macrophage polarization via a STAT5-IRF8 axis

Laura F. Dagley, J. Bedő, F. Souza-Fonseca-Guimaraes, 2022, bioRxiv.

Spleen Volume Variation in Patients with Locally Advanced Non-Small Cell Lung Cancer Receiving Platinum-Based Chemo-Radiotherapy

J. Bedő, B. Solomon, D. Ball, 2015, PloS one.

CIS controls the functional polarization of GM-CSF-derived macrophages

Laura F. Dagley, J. Bedő, F. Souza-Fonseca-Guimaraes, 2022, Cellular & Molecular Immunology.

BRCA1 secondary splice-site mutations drive exon-skipping and PARP inhibitor resistance

N. Traficante, A. deFazio, J. Bedő, 2023, medRxiv.

Multivariate Spearman's rho for Aggregating Ranks Using Copulas pdf

Cheng Soon Ong, Justin Bedo, J. Bedő, 2014, J. Mach. Learn. Res..

PBT2 rapidly improves cognition in Alzheimer's Disease: additional phase II analyses.

K. Blennow, N. Faux, J. Bedő, 2010, Journal of Alzheimer's disease : JAD.

Targeting homologous recombination deficiency in uterine leiomyosarcoma

J. Bedő, C. Scott, Ashley P Ng, 2023, Journal of Experimental & Clinical Cancer Research.

Epithelial-to-Mesenchymal Transition Supports Ovarian Carcinosarcoma Tumorigenesis and Confers Sensitivity to Microtubule Targeting with Eribulin

N. Traficante, A. deFazio, D. Bowtell, 2022, Cancer research.

Information theoretic alignment free variant calling

Benjamin Goudey, Justin Bedo, Jeremy Wazny, 2016, PeerJ Prepr..

Deep Belief Networks and Biomedical Text Categorisation

Qiang Chen, Antonio Jimeno-Yepes, Justin Bedo, 2014, ALTA.

Validation of Anti-learnable Signature in Classification of Response to Chemoradiotherapy in Esophageal Adenocarcinoma Patients 1

Adam Kowalczyk, Justin Bedo, Garvesh Raskutti, 2007 .

Large Validation of Anti-learnable Signature in Classification of Response to Chemoradiotherapy in Esophageal Adenocarcinoma Patients

Adam Kowalczyk, Justin Bedo, Garvesh Raskutti, 2007 .

Lung Imaging Reveals Stroke-Induced Impairment in Pulmonary Intravascular Neutrophil Function, a Response Exacerbated with Aging

J. Bedő, M. Hickey, P. Hall, 2022, Journal of Immunology.

BioShake: a Haskell EDSL for bioinformatics workflows

Justin Bedő, J. Bedő, 2019, PeerJ.

Iterative principal component analysis for population structure correction in large-scale datasets

J. Bedő, C. Leckie, A. Kowalczyk, 2013 .

Genome annotation test with validation on transcription start site and ChIP-Seq for Pol-II binding data

J. Bedő, A. Kowalczyk, 2011, Bioinform..

The Poisson Margin Test for Normalisation Free Significance Analysis of NGS Data

Justin Bedo, Thomas C. Conway, Bryan Beresford-Smith, 2010, RECOMB.

Simple SVM based whole-genome segmentation

Adam Kowalczyk, Justin Bedo, Izhak Haviv, 2009 .

Multi-Impairment Monitoring for Photonic Networks

Adam Kowalczyk, Justin Bedo, Sarah D. Dods, 2007 .

Supervised feature selection via dependence estimation

Karsten M. Borgwardt, Alex Smola, Le Song, 2007, ICML '07.

A Matched Molecular and Clinical Analysis of the Epithelioid Haemangioendothelioma Cohort in the Stafford Fox Rare Cancer Program and Contextual Literature Review

J. Bedő, J. Penington, A. Papenfuss, 2023, Cancers.