E. Westhof

发表

Prediction of nucleic acid binding probability in proteins: a neighboring residue network based score

Zhichao Miao, E. Westhof, 2015, Nucleic acids research.

Classification of pseudo pairs between nucleotide bases and amino acids by analysis of nucleotide–protein complexes

E. Westhof, J. Kondo, 2011, Nucleic acids research.

RNA folding: beyond Watson-Crick pairs.

E. Westhof, V. Fritsch, Eric Westhof, 2000, Structure.

RNAML: a standard syntax for exchanging RNA information.

James W. Brown, R. Altman, M. Zuker, 2002, RNA.

Hierarchy and dynamics of RNA folding.

E. Westhof, P. Brion, Philippe Brion, 1997, Annual review of biophysics and biomolecular structure.

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis.

E. Westhof, F. Michel, 1990, Journal of molecular biology.

A central pseudoknotted three-way junction imposes tRNA-like mimicry and the orientation of three 5' upstream pseudoknots in the 3' terminus of tobacco mosaic virus RNA.

E. Westhof, B. Felden, C. Florentz, 1996, RNA.

Exploration of metal ion binding sites in RNA folds by Brownian-dynamics simulations.

E. Westhof, T. Hermann, 1998, Structure.

RNA hydration: three nanoseconds of multiple molecular dynamics simulations of the solvated tRNA(Asp) anticodon hairpin.

E. Westhof, P. Auffinger, 1997, Journal of molecular biology.

Restrained refinement of the monoclinic form of yeast phenylalanine transfer RNA. Temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles.

M. Sundaralingam, E. Westhof, 1986, Biochemistry.

A pH-responsive riboregulator.

E. Westhof, S. Altuvia, G. Nechooshtan, 2009, Genes & development.

The RNA structure alignment ontology.

James W. Brown, R. Knight, E. Westhof, 2009, RNA.

A novel RNA structural motif in the selenocysteine insertion element of eukaryotic selenoprotein mRNAs.

E. Westhof, P. Carbon, R. Walczak, 1996, RNA.

Geometric nomenclature and classification of RNA base pairs.

E. Westhof, N. Leontis, 2001, RNA.

Topology of three-way junctions in folded RNAs.

E. Westhof, A. Lescoute, 2006, RNA.

Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

E. Westhof, S. Jayasena, A. Khvorova, 2003, Nature Structural Biology.

Speciation of a group I intron into a lariat capping ribozyme

E. Westhof, B. Masquida, H. Nielsen, 2014, Proceedings of the National Academy of Sciences.

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.

Katarzyna J Purzycka, K. Weeks, Zhichao Miao, 2017, RNA.

Nucleic Acids and Molecular Biology

Eric Westhof, Neocles B. Leontis, E. Westhof, 1994, Nucleic Acids and Molecular Biology.

Simulations of the dynamics at an RNA–protein interface

Thomas Hermann, Eric Westhof, E. Westhof, 1999, Nature Structural Biology.

MULTIPLE MOLECULAR DYNAMICS SIMULATIONS OF THE ANTICODON LOOP OF TRNAASP IN AQUEOUS SOLUTION WITH COUNTERIONS

Eric Westhof, Pascal Auffinger, E. Westhof, 1995 .

Molecular Dynamics: Simulations of Nucleic Acids

Eric Westhof, Pascal Auffinger, E. Westhof, 2002 .

TOWARDS COORDINATED INTERNATIONAL SUPPORT OF CORE DATA RESOURCES FOR THE LIFE SCIENCES

S. Miyano, T. Gojobori, N. Perrimon, 2017, bioRxiv.

Statistical analysis of atomic contacts at RNA–protein interfaces

E Westhof, E. Westhof, M. Treger, 2001, Journal of molecular recognition : JMR.

RNA pseudoknots

Luc Jaeger, Eric Westhof, E. Westhof, 1992, Current Biology.

Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis.

E Westhof, E. Westhof, L. Jaeger, 1998, Journal of molecular biology.

Simulations of the molecular dynamics of nucleic acids.

E Westhof, E. Westhof, P. Auffinger, 1998, Current opinion in structural biology.

Conserved geometrical base-pairing patterns in RNA

E Westhof, E. Westhof, N. Leontis, 1998, Quarterly Reviews of Biophysics.

High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome

J. Frank, C. Bajaj, E. Westhof, 2013, Nature.

High-resolution Cryo-EM Structure of the Trypanosoma brucei Ribosome: A Case Study

J. Frank, C. Bajaj, E. Westhof, 2014 .

32 High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome

J. Frank, C. Bajaj, E. Westhof, 2013 .

Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome

Daniel N. Wilson, M. Habeck, J. Söding, 2010, Proceedings of the National Academy of Sciences.

Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-Å resolution

Johannes Söding, Michael Habeck, Eric Westhof, 2010, Proceedings of the National Academy of Sciences.

Correlation between segmental mobility and the location of antigenic determinants in proteins

D. Moras, A. Klug, E. Westhof, 1984, Nature.

Visualization of macromolecular structures

D. Goodsell, R. Laskowski, R. Wade, 2010, Nature Methods.

Single Processing Center Models for Human Dicer and Bacterial RNase III

Eric Westhof, E. Westhof, W. Filipowicz, 2004, Cell.

RNA structure: bioinformatic analysis.

E. Westhof, F. Jossinet, Thomas E. Ludwig, 2007, Current opinion in microbiology.

A common motif organizes the structure of multi-helix loops in 16 S and 23 S ribosomal RNAs.

E. Westhof, N. Leontis, 1998, Journal of molecular biology.

Self-assembled RNA nanostructures

E. Westhof, N. Leontis, 2014, Science.

Effects of Vaccine Strain Mutations in Domain V of the Internal Ribosome Entry Segment Compared in the Wild Type Poliovirus Type 1 Context*

E. Westhof, Cécile E. Malnou, A. Werner, 2004, Journal of Biological Chemistry.

Modified nucleotides of tRNAPro restrict interactions in the binary primer/template complex of M-MuLV.

E. Westhof, C. Ehresmann, B. Ehresmann, 1998, Journal of molecular biology.

A three-dimensional model for the hammerhead ribozyme based on fluorescence measurements.

E. Westhof, T. Tuschl, C. Gohlke, 1994, Science.

RNA Structure: Pseudoknots

E. Westhof, C. Pleij, A. Gultyaev, 2012 .

Non-canonical substrates of aminoacyl-tRNA synthetases: the tRNA-like structure of brome mosaic virus genomic RNA.

E. Westhof, B. Felden, C. Florentz, 1993, Biochimie.

Biogenesis of Circular RNAs

E. Westhof, Q. Vicens, 2014, Cell.

Genome evolution in yeasts

B. Dujon, M. Aigle, M. Bolotin-Fukuhara, 2004, Nature.

Analysis of RNA motifs.

E. Westhof, N. Leontis, 2003, Current opinion in structural biology.

Ribozymes, catalytically active RNA molecules. Introduction.

E. Westhof, 2012, Methods in molecular biology.

RNA tectonics: towards RNA design.

E. Westhof, L. Jaeger, B. Masquida, 1996, Folding & design.

TectoRNA: modular assembly units for the construction of RNA nano-objects.

E. Westhof, N. Leontis, L. Jaeger, 2001, Nucleic acids research.

iSpinach: a fluorogenic RNA aptamer optimized for in vitro applications

E. Westhof, Alexis Autour, M. Ryckelynck, 2016, Nucleic acids research.

The Annotation of RNA Motifs

E. Westhof, N. Leontis, 2002, Comparative and functional genomics.

The building blocks and motifs of RNA architecture.

E. Westhof, N. Leontis, A. Lescoute, 2006, Current opinion in structural biology.

RNA Tertiary Structure

Eric Westhof, Pascal Auffinger, E. Westhof, 2006 .

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.

Feng Ding, Kristian Rother, Thomas Hermann, 2012, RNA.

Halogen bonds in biological molecules.

Eric Westhof, Pascal Auffinger, P Shing Ho, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Docking of aminoglycosides to hydrated and flexible RNA.

Stephen Hanessian, Nicolas Moitessier, Eric Westhof, 2006, Journal of medicinal chemistry.

Functional Hammerhead Ribozymes Naturally Encoded in the Genome of Arabidopsis thalianaw⃞

Eric Westhof, Gerhard Steger, Stefan Gräf, 2005, The Plant Cell Online.

Structural Basis of Ligand Discrimination by Two Related RNA Aptamers Resolved by NMR Spectroscopy

E Westhof, E. Westhof, P. Burgstaller, 1996, Science.

The endless subtleties of RNA-protein complexes.

E. Westhof, V. Fritsch, 2011, Structure.

structure prediction : A CASP-like evaluation of RNA three-dimensional RNA-Puzzles

Christopher A. Lavender, K. Weeks, E. Westhof, 2012 .

Sequence-based identification of 3D structural modules in RNA with RMDetect

Eric Westhof, José Almeida Cruz, E. Westhof, 2011, Nature Methods.

Correlation between the location of antigenic sites and the prediction of turns in proteins.

E Westhof, E. Westhof, M. V. Van Regenmortel, 1993, Immunology letters.

Modeling RNA tertiary structure from patterns of sequence variation.

E Westhof, F. Michel, E. Westhof, 2000, Methods in enzymology.

MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences

Patrice Koehl, Olivier Poch, Stephen R. Holbrook, 2005, Nucleic acids research.

The RNA Ontology Consortium: an open invitation to the RNA community.

James W. Brown, Helen M Berman, Steven E Brenner, 2006, RNA.

Water and ion binding around RNA and DNA (C,G) oligomers.

E Westhof, E. Westhof, P. Auffinger, 2000, Journal of molecular biology.

Isoalloxazine derivatives promote photocleavage of natural RNAs at G.U base pairs embedded within helices.

E Westhof, E. Westhof, P. Burgstaller, 1997, Nucleic acids research.

The non-Watson-Crick base pairs and their associated isostericity matrices.

Eric Westhof, Jesse Stombaugh, Neocles B Leontis, 2002, Nucleic acids research.

Frequency and isostericity of RNA base pairs

Eric Westhof, Jesse Stombaugh, Craig L. Zirbel, 2009, Nucleic acids research.

The initiation accuracy of the SV40 early transcription is determined by the functional domains of two TATA elements.

E. Westhof, P. Chambon, M. Treger, 1992, Nucleic acids research.

Refinement of protein and nucleic acid structures.

E. Westhof, P. Dumas, 1996, Methods in molecular biology.

Molecular mimicry in translational control of E. coli threonyl-tRNA synthetase gene. Competitive inhibition in tRNA aminoacylation and operator-repressor recognition switch using tRNA identity rules.

M. Grunberg‐Manago, E. Westhof, C. Ehresmann, 1992, Nucleic acids research.

A structural module in RNase P expands the variety of RNA kinks

E. Westhof, B. Masquida, M. Meyer, 2012, RNA biology.

RNA structure analysis of human spliceosomes reveals a compact 3D arrangement of snRNAs at the catalytic core

Zhichao Miao, E. Westhof, K. Hartmuth, 2013, The EMBO journal.

A pseudoknot is required for efficient translational initiation and regulation of the Escherichia coli rpsO gene coding for ribosomal protein S15.

E. Westhof, C. Ehresmann, B. Ehresmann, 1995, Biochemistry and cell biology = Biochimie et biologie cellulaire.

Switchable RNA Motifs As Drug Targets

E. Westhof, Q. Vicens, B. François, 2006 .

How to fold and protect mitochondrial ribosomal RNA with fewer guanines

Craig L. Zirbel, E. Westhof, N. Leontis, 2018, Nucleic acids research.

Mutation in a primate-conserved retrotransposon reveals a noncoding RNA as a mediator of infantile encephalopathy

A. Munnich, E. Génin, E. Westhof, 2012, Proceedings of the National Academy of Sciences.

Bacterial translation machinery for deliberate mistranslation of the genetic code

A. Badran, E. Westhof, D. Söll, 2021, Proceedings of the National Academy of Sciences.

Crystallographic studies of drug-nucleic acid interactions: proflavine intercalation between the non-complementary base-pairs of cytidilyl-3',5'-adenosine.

M. Sundaralingam, E. Westhof, S. Rao, 1980, Journal of molecular biology.

I Hydroxyl and Amino Groups Kanamycin Aminoglycosides: Role of Ring Structure-Activity Relationships among the

E. Westhof, A. Vasella, R. Akbergenov, 2014 .

Comparative genomics of emerging pathogens in the Candida glabrata clade

B. Dujon, M. Bolotin-Fukuhara, C. Fairhead, 2013, BMC Genomics.

Anticodon-anticodon interaction induces conformational changes in tRNA: yeast tRNAAsp, a model for tRNA-mRNA recognition.

E. Westhof, J. Ebel, R. Giegé, 1986, Proceedings of the National Academy of Sciences of the United States of America.

Yeast tRNAAsp tertiary structure in solution and areas of interaction of the tRNA with aspartyl-tRNA synthetase. A comparative study of the yeast phenylalanine system by phosphate alkylation experiments with ethylnitrosourea.

E. Westhof, V. Vlassov, J. Ebel, 1985, Journal of molecular biology.

Crystallographic refinement of yeast aspartic acid transfer RNA.

E Westhof, E. Westhof, D. Moras, 1985, Journal of molecular biology.

RNase P: at last, the key finds its lock.

E. Westhof, B. Masquida, 2011, RNA.

Usefulness of functional and structural solution data for the modeling of tRNA-like structures.

E. Westhof, B. Felden, C. Florentz, 1996, Pharmaceutica acta Helvetiae.

Structure of Xenopus Laevis 5S rRNA as Determined by Solution Data and Computer Graphic Modeling

E. Westhof, C. Ehresmann, P. Romby, 1990 .

Nonintercalative binding of proflavin to Z-DNA: structure of a complex between d(5BrC-G-5BrC-G) and proflavin.

M. Sundaralingam, E. Westhof, M. Hosur, 1988, Biochemistry.

Higher order structure of chloroplastic 5S ribosomal RNA from spinach.

E. Westhof, R. Mache, J. Ebel, 1988, Biochemistry.

Correlation Between Crystal and Solution Structures in tRNA. Yeast tRNAPhe and tRNAAsp the Models for Free and Messenger RNA Bound tRNAs

E. Westhof, J. Ebel, R. Giegé, 1986 .

GU Base Pairs and Variable Loop in Yeast tRNAAsp

E. Westhof, D. Moras, P. Dumas, 1986 .

Studies on anticodon-anticodon interactions: hemi-protonation of cytosines induces self-pairing through the GCC anticodon of E. coli tRNA-Gly.

E. Westhof, R. Giegé, D. Moras, 1986, Journal of biomolecular structure & dynamics.

Solvent distribution in crystals of B- and Z-oligomers.

E. Westhof, T. Prangé, D. Moras, 1985, Biochimie.

Aminoglycoside Antibiotics: Structural Decoding of Inhibitors Targeting the Ribosomal Decoding A Site

E. Westhof, J. Kondo, 2013 .

Roleofconserved nucleotides inbuilding the16SrRNA binding site ofE.coli ribosomal protein S8

E. Westhof, C. Ehresmann, B. Ehresmann, 1994 .

The RNA binding site of S8 ribosomal protein of Escherichia coli: Selex and hydroxyl radical probing studies.

E. Westhof, C. Ehresmann, B. Ehresmann, 1997, RNA.

Recognition of Watson-Crick base pairs: constraints and limits due to geometric selection and tautomerism

E. Westhof, M. Yusupov, G. Yusupova, 2014, F1000prime reports.

A surprisingly large RNase P RNA in Candida glabrata.

E. Westhof, K. Ramos, Yong Li, 2005, RNA.

The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest

Paul P Jung, B. Dujon, C. Fairhead, 2014, Biotechnology for Biofuels.

The viral protein NSP1 acts as a ribosome gatekeeper for shutting down host translation and fostering SARS-CoV-2 translation

E. Westhof, G. Eriani, F. Martin, 2020, bioRxiv.

E. Westhof, G. Eriani, F. Martin, 2022, RNA.

2,6-Diaminopurine as a highly potent corrector of UGA nonsense mutations

E. Westhof, M. Copin, A. Kulozik, 2020, Nature Communications.

Mitochondrial Aminoacyl-tRNA Synthetases in Human Disease

E. Westhof, M. Sissler, Ligia Elena González-Serrano, 2017 .

Identification and annotation of noncoding RNAs in Saccharomycotina.

E. Westhof, J. A. Cruz, 2011, Comptes rendus biologies.

bioch of an aminoglycoside / A-site RNA complex : conformational and hydration patterns

E. Westhof, P. Auffinger, A. Vaiana, 2006 .

Unusual tertiary pairs in eukaryotic tRNA

E. Westhof, X. Tong, Shubo Liang, 2020 .

Chapter 9 . Visualizing RNA sequence and structure Contributors

E. Westhof, Y. Ponty, V. Fritsch, 2011 .

Ribosomal mistranslation leads to silencing of the unfolded protein response and increased mitochondrial biogenesis

E. Westhof, H. Boukari, H. Rehrauer, 2019, Communications Biology.

The tRNAAsp-Aspartyl-tRNA Synthetase System from Yeast: Structural and Functional Studies

B. Lorber, E. Westhof, J. Ebel, 1985 .

The structure of yeast tRNA(Asp). A model for tRNA interacting with messenger RNA.

E. Westhof, J. Ebel, R. Giegé, 1985, Journal of biomolecular structure & dynamics.

RNA Structure Prediction

E. Westhof, C. Gaspin, 2002 .

The action of ionizing radiation on protein: radical formation in L-histidine crystals.

E. Westhof, A. Müller, W. Flossmann, 1975, International journal of radiation biology and related studies in physics, chemistry, and medicine.

Radical formation in salts of pyrimidines. I. 1-methyluracil. HBr crystals.

E. Westhof, A. Müller, W. Flossmann, 1975, International journal of radiation biology and related studies in physics, chemistry, and medicine.

Radical formation in salts of pyrimidines. II. Cytosine. HCl crystals.

E. Westhof, A. Müller, W. Flossman, 1975, International journal of radiation biology and related studies in physics, chemistry, and medicine.

Mutagenesis of 16 S rRNA C 1409-G 1491 Base-pair Differentiates Between 6 0 OH and 6 0 NH 3 C Aminoglycosides

E. Westhof, A. Vasella, S. Hobbie, 2005 .

Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization

Paul P Jung, B. Dujon, C. Fairhead, 2012, G3: Genes | Genomes | Genetics.

X-ray crystal structures of antibiotic-RNA complexes

E. Westhof, Q. Vicens, 2002 .

Somatic mutation in human T-cell leukemia virus type 1 provirus and flanking cellular sequences during clonal expansion in vivo.

E. Westhof, S. Wain-Hobson, E. Wattel, 2001, Journal of the National Cancer Institute.

New Structural Insights into Translational Miscoding.

E. Westhof, M. Yusupov, G. Yusupova, 2016, Trends in biochemical sciences.

High-resolution silkworm pan-genome provides genetic insights into artificial selection and ecological adaptation

E. Westhof, Weiming He, Z. Xiang, 2022, Nature Communications.

Binding of Neomycin-Class Aminoglycoside Antibiotics to Mutant Ribosomes with Alterations in the A Site of 16S rRNA

E. Westhof, S. Hobbie, E. Böttger, 2006, Antimicrobial Agents and Chemotherapy.

RNAs mediating cotranslational insertion of selenocysteine in eukaryotic selenoproteins.

E Westhof, E. Westhof, P. Carbon, 1996, Biochimie.

Influence of specific mutations on the thermal stability of the td group I intron in vitro and on its splicing efficiency in vivo: a comparative study.

E. Westhof, P. Brion, F. Michel, 1999, RNA.

Loop-loop interactions involved in antisense regulation are processed by the endoribonuclease III in Staphylococcus aureus

E. Westhof, F. Vandenesch, S. Marzi, 2012, RNA biology.

Specific features of telomerase RNA from Hansenula polymorpha

E. Westhof, N. Ravin, O. Dontsova, 2013, RNA.

RNA–RNA interaction is required for the formation of specific bicoid mRNA 3′ UTR–STAUFEN ribonucleoprotein particles

E Westhof, C. Nüsslein-Volhard, E. Westhof, 1997, The EMBO journal.

Crystal structure of yeast tRNAAsp: atomic coordinates.

E. Westhof, J. Ebel, R. Giegé, 1985, Biochimie.

Solution Conformation of tRNAs: Correlation with Crystal Structures

E. Westhof, J. Ebel, C. Florentz, 1983 .

The Versatile Transfer RNA Molecule: Crystallography of Yeast tRNAAsp

E. Westhof, R. Giegé, D. Moras, 1983 .

Conformation of the common purine (β) ribosides in solution: further evidence for a correlation between N-S state of the ribose moiety and syn-anti equilibrium

E. Westhof, E. Goldammer, H. Lüdemann, 1975, Biophysics of structure and mechanism.

Solution conformational analysis of 2'-amino-2''deoxyadenosine, 3'-amino-3'-deoxyadenosine and puromycin by pulsed nuclear-magnetic-resonance methods.

E. Westhof, H. Lüdemann, H. Plach, 1977, European journal of biochemistry.

Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS.

E. Westhof, S. Marzi, P. Romby, 2019, Biochimie.

Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code

E. Westhof, M. Yusupov, G. Yusupova, 2016, Nature Communications.

Deciphering RNA recognition: aminoglycoside binding to the hammerhead ribozyme.

E. Westhof, T. Hermann, Y. Tor, 1998, Chemistry & biology.

Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

E. Westhof, S. Jayasena, A. Khvorova, 2003, Nature Structural Biology.

Calculations of nucleic acid conformations.

E Westhof, E. Westhof, P. Auffinger, 1996, Current opinion in structural biology.

Proton magnetic resonance studies of 2'-,3'-, and 5'-deoxyadenosine conformations in solution.

E. Westhof, H. Lüdemann, H. Plach, 1977, Nucleic acids research.

Rules governing the orientation of the 2'-hydroxyl group in RNA.

E Westhof, E. Westhof, P. Auffinger, 1997, Journal of molecular biology.

Appendix: UV Spectroscopy for the Quantitation of RNA

E. Westhof, R. Hartmann, A. Bindereif, 2005 .

Ribozymes: the first 20 years.

E. Westhof, M. Fedor, 2002, Molecular cell.

New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme.

E Westhof, E. Westhof, L. Jaeger, 1996, Chemistry & biology.

Marszalkowski-1-Comparative study on tertiary contacts and folding of RNase P RNAs from a 1 psychrophilic , a mesophilic / radiation-resistant and a thermophilic bacterium 2 3

E. Westhof, R. Hartmann, A. Werner, 2021 .

Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models

Tomasz K. Wirecki, Zhichao Miao, E. Westhof, 2022, International journal of molecular sciences.

A dynamic correlation between ribose conformation and glycosyl torsion angle of dissolved xanthosine studies by continuous-wave-mode and pulsed nuclear-magnetic-resonance methods.

E. Westhof, H. Lüdemann, O. Röder, 1974, European Journal of Biochemistry.

How to silence silencing.

E. Westhof, 2004, Chemistry & biology.

Exact method for the calculation of pseudorotation parameters P, τm and their errors. A comparison of the Altona–Sundaralingam and Cremer–Pople treatment of puckering of five-membered rings

M. Sundaralingam, E. Westhof, S. Rao, 1981 .

RNA as a drug target: chemical, modelling, and evolutionary tools.

E Westhof, E. Westhof, T. Hermann, 1998, Current opinion in biotechnology.

Importance of conserved residues for the conformation of the T-loop in tRNAs.

E. Westhof, P. Carbon, J. Ebel, 1987, Journal of biomolecular structure & dynamics.

Ribose Conformations in the Common Purine(ß)ribosides, in Some Antibiotic Nucleosides, and in Some Isopropylidene Derivatives: A Comparison

E. Westhof, H. Lüdemann, O. Röder, 1975, Zeitschrift fur Naturforschung. Section C, Biosciences.

Molecular Dynamics Simulations of the Anticodon Hairpin of tRNAAsp: Structuring Effects of C−H···O Hydrogen Bonds and of Long-Range Hydration Forces

E. Westhof, P. Auffinger, S. Louise-May, 1996 .

Alternating d(G‐A) sequences form a parallel‐stranded DNA homoduplex.

E. Westhof, V. Fritsch, K. Rippe, 1992, The EMBO journal.

Three-center hydrogen bonds in DNA: molecular dynamics of poly(dA).cntdot.poly(dT)

E. Westhof, V. Fritsch, 1991 .

An RNA-centric historical narrative around the Protein Data Bank

E. Westhof, N. Leontis, 2021, The Journal of biological chemistry.

Evaluation of uranyl photocleavage as a probe to monitor ion binding and flexibility in RNAs.

E. Westhof, C. Berens, C. Hammann, 2000, Journal of molecular biology.

X-ray-structure of a cytidylyl-3',5'-adenosine-proflavine complex: a self-paired parallel-chain double helical dimer with an intercalated acridine dye.

M. Sundaralingam, E. Westhof, 1980, Proceedings of the National Academy of Sciences of the United States of America.

Solution Conformations of Purine(ß)Nucleosides and Analogs

E. Westhof, H. Lüdemann, 1978 .

ESR and INDO study of radical conformations in irradiated single crystals of L‐histidine free base

E. Westhof, H. Lüdemann, A. Müller, 1974 .

The “rigid” nucleotide concept in perspective

M. Sundaralingam, E. Westhof, 2009 .

Transcriptome-wide identification of A > I RNA editing sites by inosine specific cleavage.

J. Mattick, E. Westhof, Pierre B. Cattenoz, 2013, RNA.

The protonation of the 5-thymyl radical in single crystals of thymine derivatives: e.s.r. and INDO evidence.

E. Westhof, W. Flossmann, H. Zehner, 1979, International journal of radiation biology and related studies in physics, chemistry, and medicine.

Molecular recognition of aminoglycoside antibiotics by ribosomal RNA and resistance enzymes: an analysis of x-ray crystal structures.

E. Westhof, Q. Vicens, 2003, Biopolymers.

Aminoglycoside-RNA interactions.

E. Westhof, F. Walter, Q. Vicens, 1999, Current opinion in chemical biology.

RNA as a Drug Target: The Case of Aminoglycosides

Eric Westhof, Quentin Vicens, E. Westhof, 2003, Chembiochem : a European journal of chemical biology.

Crystal structure of the bacterial ribosomal decoding site complexed with amikacin containing the γ-amino-α-hydroxybutyryl (haba) group

E. Westhof, J. Kondo, J. Murray, 2006 .

A standard reference frame for the description of nucleic acid base-pair geometry.

H M Berman, M Gerstein, S Neidle, 2001, Journal of molecular biology.

E.S.R. and INDO study of radicals produced in irradiated single crystals of histidine hydrochloride monohydrate at low temperature

E. Westhof, A. Müller, W. Flossmann, 1974 .

Detection of an OH-addition radical and its possible decay product in single crystals of cytosine monohydrate.

E. Westhof, A. Müller, W. Flossmann, 1977, Radiation research.

Electron spin resonance of irradiated single crystals of uracil

E. Westhof, A. Müller, W. Flossmann, 1976 .

The action of ionizing radiation on protein. III. Radical formation in L-phenylalanine.HCl.

E. Westhof, W. Flossmann, 1978, International journal of radiation biology and related studies in physics, chemistry, and medicine.

Temperature-dependent long-range proton hyperfine coupling in pyrimidine H-addition radicals trapped in single crystals

E. Westhof, A. Müller, W. Flossmann, 1977 .

Letter: E.s.r. of irradiated single crystals of cytosine.

E. Westhof, J. Hüttermann, 1973, International journal of radiation biology and related studies in physics, chemistry, and medicine.

Structure of radicals from nucleic acid constituents.

E. Westhof, J. Hüttermann, J. Herak, 1978, Molecular biology, biochemistry, and biophysics.

Formation of H-addition radicals in some pyrimidine and purine derivatives

E. Westhof, A. Müller, W. Flossmann, 1977 .

Light‐induced displacement of hydrogen in pyrimidine H‐addition radicals

E. Westhof, A. Müller, W. Flossmann, 1976 .

Photosensitized induction of H-addition radicals in frozen aqueous solutions of cytosine and uracil derivatives.

E. Westhof, Y. Lion, A. Van de Vorst, 1977, International journal of radiation biology and related studies in physics, chemistry, and medicine.

INDO analysis of the imidazole anion and hydrogen addition radicals

E. Westhof, W. Flossmann, 1975 .

Electron Spin Resonance of Free Radicals and Radical Pairs in Irradiated Single Crystal of 1-Methyluracil

E. Westhof, J. Hüttermann, A. Müller, 1973 .

INDO study of bent radical anions

E. Westhof, A. Müller, 1975 .

Formation of H Adduct Radicals in Cytosine and Its Derivatives

E. Westhof, 1973 .

The Action of Ionizing Radiation on Protein: II. Radical Formation in L-Tryptophan·HCl

E. Westhof, W. Flossmann, 1978 .

Formation of H-Addition Radicals in Adenine Derivatives: Part II

E. Westhof, W. Flossmann, H. Zehner, 1977, Zeitschrift fur Naturforschung. Section C, Biosciences.

Formation of H -Addition Radicals in Adenine Derivatives

E. Westhof, W. Flossmann, H. Zehner, 1976, Zeitschrift fur Naturforschung. Section C, Biosciences.

MO Calculations of Some Thymine Radicals at the INDO Level

E. Westhof, M. van Rooten, 1976, Zeitschrift fur Naturforschung. Section C, Biosciences.

Radicals in irradiated monocrystals of the base-pair complex 9-ethyl adenine: 1-methyl uracil.

E. Westhof, A. Müller, W. Flossmann, 1974, International journal of radiation biology and related studies in physics, chemistry, and medicine.

E.s.r.-spectroscopy of radiation-produced radicals in 9-ethyl adenine.

E. Westhof, A. Müller, W. Flossmann, 1974, International Journal of Radiation Biology and Related Studies in Physics Chemistry and Medicine.

Temperature-Dependent Resonance between Electronic Exchange and Zeeman Energies in ESR Spectra of Paired Radicals

E. Westhof, W. Flossmann, A. Müller, 1975 .

Electron spin resonance study of radiation-produced radical pairs in single crystals of 1-methyluracil

E. Westhof, A. Müller, W. Flossmann, 1975 .

Radical formation in single crystals of hypoxanthine.HCl.H2O, inosine, and the disodium salt of 5'-inosine-monophosphate.

E. Westhof, A. Müller, W. Flossmann, 1978, International journal of radiation biology and related studies in physics, chemistry, and medicine.

LIGHT-INDUCED DISPLACEMENT OF HYDROGEN IN PYRIMIDINE H-ADDITION RADICALS

E. Westhof, W. Flossmann, A. Mueller, 1976 .

Radical formation in salts of pyrimidines III. Cytosine . H2O cyrstals.

E. Westhof, A. Müller, W. Flossmann, 1976, International journal of radiation biology and related studies in physics, chemistry, and medicine.

Mechanism of refolding and reactivation of lactic dehydrogenase from pig heart after dissociation in various solvent media.

E. Westhof, R. Jaenicke, R. Rudolph, 1977, Biochemistry.

Crystal structure of paromomycin docked into the eubacterial ribosomal decoding A site.

E Westhof, E. Westhof, Q. Vicens, 2001, Structure.

Metal ion binding to RNA.

Eric Westhof, Pascal Auffinger, Neena Grover, 2011, Metal ions in life sciences.

Anion binding to nucleic acids.

E. Westhof, L. Bielecki, P. Auffinger, 2004, Structure.

Symmetric K+ and Mg2+ ion-binding sites in the 5S rRNA loop E inferred from molecular dynamics simulations.

Eric Westhof, Pascal Auffinger, Lukasz Bielecki, 2004, Journal of molecular biology.

The Mg2+ binding sites of the 5S rRNA loop E motif as investigated by molecular dynamics simulations.

E. Westhof, L. Bielecki, P. Auffinger, 2003, Chemistry & biology.

Water and ion binding around r(UpA)12 and d(TpA)12 oligomers--comparison with RNA and DNA (CpG)12 duplexes.

E Westhof, E. Westhof, P. Auffinger, 2001, Journal of molecular biology.

Hydration of RNA base pairs.

E Westhof, E. Westhof, P. Auffinger, 1998, Journal of biomolecular structure & dynamics.

Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding

Eric Westhof, Quentin Vicens, Benoît Masquida, 2005, Nucleic acids research.

The 5S rRNA loop E: chemical probing and phylogenetic data versus crystal structure.

E Westhof, E. Westhof, N. Leontis, 1998, RNA.

Primary, Secondary, and Tertiary Structures of tRNAs

E. Westhof, P. Dumas, G. Keith, 1995 .

Using droplet-based microfluidics to improve the catalytic properties of RNA under multiple-turnover conditions

Andrew D Griffiths, Eric Westhof, Michael Ryckelynck, 2015, RNA.

Structure of a Z-DNA with two different backbone chain conformations. Stabilization of the decadeoxyoligonucleotide d(CGTACGTACG) by [Co(NH3)6]3+ binding to the guanine.

M. Sundaralingam, E. Westhof, R. Brennan, 1986, Journal of biomolecular structure & dynamics.

Kinetic analysis of the reactivation of rabbit muscle aldolase after denaturation with guanidine·HCl

E. Westhof, R. Jaenicke, R. Rudolph, 1977, FEBS letters.

Crystal structure of geneticin bound to a bacterial 16S ribosomal RNA A site oligonucleotide.

Eric Westhof, Quentin Vicens, E. Westhof, 2003, Journal of molecular biology.

Crystal structure of a complex between the aminoglycoside tobramycin and an oligonucleotide containing the ribosomal decoding a site.

E. Westhof, Q. Vicens, 2002, Chemistry & biology.

A PNPase Dependent CRISPR System in Listeria

M. Touchon, E. Rocha, E. Westhof, 2014, PLoS genetics.

Inter-domain cross-linking and molecular modelling of the hairpin ribozyme.

E. Westhof, B. Masquida, S. Sigurdsson, 1997, Journal of molecular biology.

Investigations on the dynamic structures of adenine- and thymine-containing DNA.

E. Westhof, V. Fritsch, J. Brahms, 1992, Journal of molecular biology.

The Dynamic Landscapes of RNA Architecture

Eric Westhof, José Almeida Cruz, E. Westhof, 2009, Cell.

Predicting and modeling RNA architecture.

Eric Westhof, Fabrice Jossinet, Benoît Masquida, 2011, Cold Spring Harbor perspectives in biology.

The interaction networks of structured RNAs.

E. Westhof, A. Lescoute, E. Westhof, 2006, Nucleic acids research.

Nucleic acids on folded architectures, molecular recognition and catalysis

E. Westhof, D. Patel, 1999 .

Crystal structure of the Homo sapiens cytoplasmic ribosomal decoding site complexed with apramycin.

E. Westhof, J. Kondo, A. Urzhumtsev, 2006, Angewandte Chemie.

Crystal Structure of the Bacterial Ribosomal Decoding Site Complexed with a Synthetic Doubly Functionalized Paromomycin Derivative: a New Specific Binding Mode to an A‐Minor Motif Enhances in vitro Antibacterial Activity

E. Westhof, J. Kondo, S. Hanessian, 2007, ChemMedChem.

Inhibition of Aminoglycoside‐Deactivating Enzymes APH(3′)‐IIIa and AAC(6′)‐Ii by Amphiphilic Paromomycin O2′′‐Ether Analogues

E. Westhof, J. Kondo, S. Hanessian, 2011, ChemMedChem.

Structure-based design, synthesis and A-site rRNA co-crystal complexes of novel amphiphilic aminoglycoside antibiotics with new binding modes: a synergistic hydrophobic effect against resistant bacteria.

E. Westhof, J. Kondo, S. Hanessian, 2010, Bioorganic & Medicinal Chemistry Letters.

H-bond stability in the tRNA(Asp) anticodon hairpin: 3 ns of multiple molecular dynamics simulations.

E. Westhof, P. Auffinger, 1996, Biophysical journal.

Interrelationships between the pseudorotation parameters P and .tau.m and the geometry of the furanose ring

M. Sundaralingam, E. Westhof, 1980 .

Analysis of the Contribution of Individual Substituents in 4,6-Aminoglycoside-Ribosome Interaction

E. Westhof, S. Hobbie, E. Böttger, 2005, Antimicrobial Agents and Chemotherapy.

Structure-Based Design, Synthesis, and A-Site rRNA Cocrystal Complexes of Functionally Novel Aminoglycoside Antibiotics: C2'' Ether Analogues of Paromomycin

E. Westhof, J. Kondo, S. Hanessian, 2007 .

Differential Selectivity of Natural and Synthetic Aminoglycosides towards the Eukaryotic and Prokaryotic Decoding A Sites

E. Westhof, J. Kondo, D. S. Pilch, 2007, Chembiochem : a European journal of chemical biology.

The Molecular Basis for A‐Site Mutations Conferring Aminoglycoside Resistance: Relationship between Ribosomal Susceptibility and X‐ray Crystal Structures

Eric Westhof, Quentin Vicens, E. Westhof, 2003, Chembiochem : a European journal of chemical biology.

Docking of cationic antibiotics to negatively charged pockets in RNA folds.

E Westhof, E. Westhof, T. Hermann, 1999, Journal of medicinal chemistry.

Antibiotic inhibition of RNA catalysis: neomycin B binds to the catalytic core of the td group I intron displacing essential metal ions.

E Westhof, E. Westhof, C. Berens, 1998, Journal of molecular biology.

Aminoglycoside binding to the hammerhead ribozyme: a general model for the interaction of cationic antibiotics with RNA.

E. Westhof, T. Hermann, 1998, Journal of molecular biology.

Antibacterial aminoglycosides with a modified mode of binding to the ribosomal-RNA decoding site.

R. Griffey, E. Westhof, S. Hanessian, 2004, Angewandte Chemie.

Structure-based design, synthesis, and A-site rRNA cocrystal complexes of functionally novel aminoglycoside antibiotics: C2" ether analogues of paromomycin.

E. Westhof, J. Kondo, S. Hanessian, 2007, Journal of medicinal chemistry.

Covalent binding of a carcinogen as a probe for the dynamics of deoxyribonucleic acid.

E. Westhof, R. Fuchs, M. Daune, 1985, Biochemistry.

Solution structure of mRNA hairpins promoting selenocysteine incorporation in Escherichia coli and their base-specific interaction with special elongation factor SELB.

E Westhof, E. Westhof, A. Hüttenhofer, 1996, RNA.

Mutations in signal recognition particle SRP54 cause syndromic neutropenia with Shwachman-Diamond–like features

Magalie S Leduc, M. Konantz, C. Lengerke, 2017, The Journal of clinical investigation.

Base pairs and pseudo pairs observed in RNA–ligand complexes

E. Westhof, J. Kondo, 2009, Journal of molecular recognition : JMR.

Three-dimensional model of Escherichia coli ribosomal 5 S RNA as deduced from structure probing in solution and computer modeling.

E. Westhof, C. Ehresmann, P. Romby, 1991, Journal of molecular biology.

The Solution Structure of Spinach Chloroplast and of Xenopus Laevis Oocyte 5S rRNAs

E. Westhof, R. Mache, C. Ehresmann, 1991 .

Ribosomal 5S RNA from Xenopus laevis oocytes: conformation and interaction with transcription factor IIIA.

E. Westhof, C. Ehresmann, P. Romby, 1990, Biochimie.

Computer modeling from solution data of spinach chloroplast and of Xenopus laevis somatic and oocyte 5 S rRNAs.

E Westhof, E. Westhof, J. Ebel, 1989, Journal of molecular biology.

Molecular adaptation in RNA complexes.

E. Westhof, V. Fritsch, 2009, Structure.

Transfer RNA identity rules and conformation of the tyrosine tRNA-like domain of BMV RNA imply additional charging by histidine and valine.

E. Westhof, B. Felden, C. Florentz, 1998, Biochemical and biophysical research communications.

Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals.

E Westhof, E. Westhof, D. Moras, 1987, Acta crystallographica. Section A, Foundations of crystallography.

Mutant MRPS5 affects mitoribosomal accuracy and confers stress‐related behavioral alterations

E. Westhof, H. Boukari, H. Rehrauer, 2018, EMBO reports.

Evidence for a hydroxide ion bridging two magnesium ions at the active site of the hammerhead ribozyme.

E. Westhof, W. Scott, T. Hermann, 1997, Nucleic acids research.

From RNAi to Epigenomes: How RNA Rules The World

E. Westhof, W. Filipowicz, 2005, Chembiochem : a European journal of chemical biology.

Comparative genomics of protoploid Saccharomycetaceae.

Adrien Goëffon, Macha Nikolski, Pascal Durrens, 2009, Genome research.

Evolution of RNA Architecture

Eric Westhof, E. Westhof, C. Massire, 2004, Science.

Phylogenetic analysis of tmRNA genes within a bacterial subgroup reveals a specific structural signature.

E Westhof, E. Westhof, J. F. Atkins, 2001, Nucleic acids research.

Large telomerase RNA, telomere length heterogeneity and escape from senescence in Candida glabrata

B. Dujon, C. Fairhead, E. Gilson, 2009, FEBS letters.

The RNA polymerase III-dependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications

B. Dujon, E. Westhof, R. Kachouri-Lafond, 2006, Nucleic acids research.

RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools

Janusz M Bujnicki, Tomasz Zok, Jakub Wiedemann, 2019, Nucleic acids research.

An integrated, structure- and energy-based view of the genetic code

E. Westhof, H. Grosjean, 2016, Nucleic acids research.

Distinctive structures between chimpanzee and human in a brain noncoding RNA.

Eric Westhof, E. Westhof, A. Krol, 2008, RNA.

The RNA structurome: high-throughput probing

Eric Westhof, Pascale Romby, E. Westhof, 2010, Nature Methods.

Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate

Frédéric Delsuc, Boris Lenhard, Hans Lehrach, 2010, Science.

Eukaryotic tRNA sequences present conserved and amino acid-specific structural signatures

Patricia P. Chan, T. Lowe, E. Westhof, 2022, Nucleic acids research.

Reference genomes of 545 silkworms enable high-throughput exploring genotype-phenotype relationships

Jian Wang, E. Westhof, Weiming He, 2021, bioRxiv.

Base pairing constraints drive structural epistasis in ribosomal RNA sequences.

Eric Westhof, Fabrice Jossinet, E. Westhof, 2010, Molecular biology and evolution.

Solution structure of human U1 snRNA. Derivation of a possible three- dimensional model

Eric Westhof, M. Bach, J. P. Ebel, 1990, Nucleic Acids Res..

Comparative patterns of modified nucleotides in individual tRNA species from a mesophilic and two thermophilic archaea

E. Westhof, L. Droogmans, H. Grosjean, 2020, RNA.

Mining for recurrent long-range interactions in RNA structures reveals embedded hierarchies in network families

Alain Denise, Jérôme Waldispühl, Vladimir Reinharz, 2018, Nucleic acids research.

Effects of Pseudouridylation on tRNA Hydration and Dynamics: a Theoretical Approach

E. Westhof, P. Auffinger, 1998 .

X-Ray analyses of non-coding DNA/RNAs that function as molecular switches

E. Westhof, J. Kondo, A. Takénaka, 2008 .

Data, data, burning deep, in the forests of the net.

E. Westhof, Eric Westhof, 2022, Biochemical and biophysical research communications.

Structure of an A-form RNA duplex obtained by degradation of 6S RNA in a crystallization droplet.

E. Westhof, J. Kondo, R. Hartmann, 2013, Acta crystallographica. Section F, Structural biology and crystallization communications.

Tools for the automatic identification and classification of RNA base pairs

John D. Westbrook, Helen M. Berman, Huanwang Yang, 2003, Nucleic Acids Res..

On the wobble GoU and related pairs.

E Westhof, E. Westhof, B. Masquida, 2000, RNA.

The three-dimensional architecture of the class I ligase ribozyme.

N. Bergman, N. Lau, D. Bartel, 2004, RNA.

PMR study of N6 ,N6‐dimethyladenosine conformations under high pressure

E. Westhof, E. Lång, H. Lüdemann, 1977, FEBS letters.

A quantitative RNA code for mRNA target selection by the germline fate determinant GLD‐1

Brian M. Farley, E. Westhof, Dimos Gaidatzis, 2011, The EMBO journal.

Pronounced instability of tandem IU base pairs in RNA.

Eric Westhof, E. Westhof, M. Serra, 2004, Nucleic acids research.

Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome

Klaus Schulten, Eric Westhof, Shashi Bhushan, 2009, Science.

Molecular dissection of the pseudoknot governing the translational regulation of Escherichia coli ribosomal protein S15.

Chantal Ehresmann, Bernard Ehresmann, Claude Philippe, 1995, Nucleic Acids Res..

The modular structure of Escherichia coli threonyl‐tRNA synthetase as both an enzyme and a regulator of gene expression

E. Westhof, A. Torres-Larios, C. Ehresmann, 2003, Molecular microbiology.

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction

E. Westhof, M. Yusupov, G. Yusupova, 2019, Nature Communications.

Molecular contacts between antibiotics and the 30S ribosomal particle.

E. Westhof, Julia Wirmer, 2006, Methods in enzymology.

An unusual RNA tertiary interaction has a role for the specific aminoacylation of a transfer RNA.

E. Westhof, R. Giegé, Y. Hou, 1993, Proceedings of the National Academy of Sciences of the United States of America.

Four-way junctions in antisense RNA-mRNA complexes involved in plasmid replication control: a common theme?

E. Westhof, E. Wagner, C. Ehresmann, 2001, Journal of molecular biology.

The conformation of the initiator tRNA and of the 16S rRNA from Escherichia coli during the formation of the 30S initiation complex.

M. Grunberg‐Manago, E. Westhof, J. Ebel, 1990, Biochimica et biophysica acta.

Tautomeric G•U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria

E. Westhof, M. Yusupov, G. Yusupova, 2018, Nucleic acids research.

The ribosome prohibits the G•U wobble geometry at the first position of the codon–anticodon helix

E. Westhof, M. Yusupov, G. Yusupova, 2016, Nucleic acids research.

Structural insights into the translational infidelity mechanism

Eric Westhof, E. Westhof, M. Yusupov, 2015, Nature Communications.

A new understanding of the decoding principle on the ribosome

E. Westhof, M. Yusupov, G. Yusupova, 2012, Nature.

Effects of magnesium ions on the stabilization of RNA oligomers of defined structures.

Eric Westhof, E. Westhof, M. Serra, 2002, RNA.

Pseudouridines or how to draw on weak energy differences.

E. Westhof, 2019, Biochemical and biophysical research communications.

Isostericity and tautomerism of base pairs in nucleic acids

E. Westhof, 2014, FEBS letters.

New structural insights into the decoding mechanism: Translation infidelity via a G·U pair with Watson–Crick geometry

E. Westhof, M. Yusupov, G. Yusupova, 2013, FEBS letters.

Hydration of transfer RNA molecules: a crystallographic study.

E. Westhof, D. Moras, P. Dumas, 1988, Biochimie.

Recent Advances in Mitochondrial Aminoacyl-tRNA Synthetases and Disease.

E. Westhof, M. Sissler, Ligia Elena González-Serrano, 2017, Trends in molecular medicine.

MANIP: an interactive tool for modelling RNA.

C Massire, E Westhof, E. Westhof, 1998, Journal of molecular graphics & modelling.

Predicting location of continuous epitopes in proteins from their primary structures.

E Westhof, E. Westhof, J. Pellequer, 1991, Methods in enzymology.

The amazing world of bacterial structured RNAs

Eric Westhof, E. Westhof, 2010, Genome Biology.

Proximity of conserved U6 and U2 snRNA elements to the 5′ splice site region in activated spliceosomes

E. Westhof, K. Hartmuth, R. Lührmann, 2006, The EMBO journal.

Binding of tobramycin leads to conformational changes in yeast tRNAAsp and inhibition of aminoacylation

E. Westhof, R. Giegé, F. Walter, 2002, The EMBO journal.

2,6-Diaminopurine as a highly potent corrector of UGA nonsense mutations

E. Westhof, M. Copin, A. Kulozik, 2020, Nature Communications.

The 2,6-diaminopurine as a highly potent corrector of UGA nonsense mutations in cancers and other genetic diseases

E. Westhof, M. Copin, P. Reix, 2020 .

Structural basis for the specificity of the initiation of HIV‐1 reverse transcription

E. Westhof, C. Ehresmann, C. Isel, 1999, The EMBO journal.

Water and Biological Macromolecules

Eric Westhof, E. Westhof, 1993 .

Proflavine binding to poly(rC-rA) inverts the CD spectrum but not the helix handedness.

M. Sundaralingam, E. Westhof, 1984, Journal of biomolecular structure & dynamics.

An interactive framework for RNA secondary structure prediction with a dynamical treatment of constraints.

E Westhof, C Gaspin, E. Westhof, 1995, Journal of molecular biology.

An extended structural signature for the tRNA anticodon loop.

E. Westhof, P. Auffinger, E. Westhof, 2001, RNA.

Singly and bifurcated hydrogen-bonded base-pairs in tRNA anticodon hairpins and ribozymes.

E Westhof, E. Westhof, P. Auffinger, 1999, Journal of molecular biology.

Catalytic RNA

E. Westhof, F. Walter, E. Westhof, 2001 .

Searching genomes for ribozymes and riboswitches

Eric Westhof, E. Westhof, C. Hammann, 2007, Genome Biology.

Group I-like ribozymes with a novel core organization perform obligate sequential hydrolytic cleavages at two processing sites.

E Westhof, E. Westhof, F. Michel, 1998, RNA.

A Tyrosyl-tRNA Synthetase Recognizes a Conserved tRNA-like Structural Motif in the Group I Intron Catalytic Core

E. Westhof, A. Lambowitz, M. Caprara, 1996, Cell.

Translation of non-standard codon nucleotides reveals minimal requirements for codon-anticodon interactions

S. Joseph, E. Westhof, R. Micura, 2018, Nature Communications.

Translation of non-standard codon nucleotides reveals minimal requirements for codon-anticodon interactions

S. Joseph, E. Westhof, R. Micura, 2018, Nature Communications.

The nature of the purine at position 34 in tRNAs of 4-codon boxes is correlated with nucleotides at positions 32 and 38 to maintain decoding fidelity

E. Westhof, G. Eriani, F. Martin, 2020, Nucleic acids research.

Structure-Activity Relationships among the Kanamycin Aminoglycosides: Role of Ring I Hydroxyl and Amino Groups

E. Westhof, A. Vasella, E. Böttger, 2012, Antimicrobial Agents and Chemotherapy.

Non-Watson-Crick base pairs in RNA-protein recognition.

E Westhof, E. Westhof, T. Hermann, 1999, Chemistry & biology.

Structural Comparisons Between Prokaryotic and Eukaryotic Ribosomal Decoding A Sites Free and Complexed with Aminoglycosides

E. Westhof, J. Kondo, 2007 .

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

Feng Ding, Janusz M Bujnicki, Lin Huang, 2020, RNA.

PREDITOP: a program for antigenicity prediction.

E Westhof, E. Westhof, J. Pellequer, 1993, Journal of molecular graphics.

Determination of thermodynamic parameters for HIV DIS type loop-loop kissing complexes.

Christoph Flamm, Eric Westhof, C. Flamm, 2004, Nucleic acids research.

Unusual helical packing in crystals of DNA bearing a mutation hot spot

E. Westhof, D. Moras, Y. Timsit, 1989, Nature.

Minimization and molecular dynamics studies of guanosine and Z‐DNA modified by N‐2‐acetylaminofluorene

E. Westhof, V. Fritsch, 1991 .

Polymorphism and possible biological functions of parallel-stranded DNA

E. Westhof, K. Rippe, T. Jovin, 1992 .

Comparative study on tertiary contacts and folding of RNase P RNAs from a psychrophilic, a mesophilic/radiation-resistant, and a thermophilic bacterium

E. Westhof, R. Hartmann, A. Werner, 2021, RNA.

Westhof's rule

E. Westhof, 1992, Nature.

Course 2 Introduction to non-watson-crick base pairs and RNA folding

E. Westhof, V. Fritsch, 2005 .

The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates

E. Westhof, J. Kondo, 2008, Nucleic acids research.

Water: an integral part of nucleic acid structure.

E Westhof, E. Westhof, Eric Westhof, 1988, Annual review of biophysics and biophysical chemistry.

Crystal structure of the bacterial ribosomal decoding site complexed with amikacin containing the gamma-amino-alpha-hydroxybutyryl (haba) group.

E. Westhof, J. Kondo, J. Murray, 2006, Biochimie.

Rational drug design and high-throughput techniques for RNA targets.

E Westhof, E. Westhof, T. Hermann, 2000, Combinatorial chemistry & high throughput screening.

Molecular dynamics investigations of hammerhead ribozyme RNA

E. Westhof, T. Hermann, P. Auffinger, 1998, European Biophysics Journal.

Hydration of C-H groups in tRNA.

E. Westhof, P. Auffinger, S. Louise-May, 1996, Faraday discussions.

Brownian-dynamics simulations of metal-ion binding to four-way junctions.

E. Westhof, S. Wijmenga, T. Hermann, 2002, Nucleic acids research.

A Large-Scale Assessment of Nucleic Acids Binding Site Prediction Programs

Eric Westhof, Zhichao Miao, Zhichao Miao, 2015, PLoS Comput. Biol..

Structure of the ribosome-bound cricket paralysis virus IRES RNA

Eric Westhof, E. Westhof, P. Penczek, 2006, Nature Structural &Molecular Biology.

Solution structure of the 3'-end of brome mosaic virus genomic RNAs. Conformational mimicry with canonical tRNAs.

E. Westhof, B. Felden, C. Florentz, 1994, Journal of molecular biology.

Host-guest molecular interactions: from chemistry to biology

E. Westhof, E. Westhof, 1991 .

Milestones in Molecular Dynamics Simulations of RNA Systems

Yaser Hashem, Eric Westhof, Pascal Auffinger, 2008 .

RNA solvation: A molecular dynamics simulation perspective

E Westhof, E. Westhof, P. Auffinger, 2000, Biopolymers.

Molecular dynamics simulations of solvated yeast tRNA(Asp).

E Westhof, E. Westhof, P. Auffinger, 1999, Biophysical journal.

RNA Structure: Advances and Assessment of 3D Structure Prediction.

Eric Westhof, Zhichao Miao, Zhichao Miao, 2017, Annual review of biophysics.

RNA Structure: Advances and Assessment of 3D Structure Prediction.

Zhichao Miao, E. Westhof, 2017, Annual review of biophysics.

BIOINFORMATICS APPLICATIONS NOTE

Eric Westhof, Fabrice Jossinet, Thomas E. Ludwig, 2022 .

The A-minor motifs in the decoding recognition process.

E Westhof, E. Westhof, A. Lescoute, 2006, Biochimie.

Binding of Escherichia coli ribosomal protein S8 to 16 S rRNA. A model for the interaction and the tertiary structure of the RNA binding site.

E. Westhof, J. Ebel, C. Ehresmann, 1987, Journal of molecular biology.

DRAWNA: a program for drawing schematic views of nucleic acids.

C Massire, C Gaspin, E Westhof, 1994, Journal of molecular graphics.

The Mg 2 Binding Sites of the 5 S rRNA Loop E Motif as

E. Westhof, L. Bielecki, P. Auffinger, 2003 .

Leadzyme RNA catalysis

E. Westhof, T. Hermann, 1999, Nature Structural Biology.

Context dependent RNA-RNA recognition in a three-dimensional model of the 16S rRNA core.

E. Westhof, B. Felden, B. Masquida, 1997, Bioorganic & medicinal chemistry.

Hydration of oligonucleotides in crystals

E. Westhof, 1987 .

Involvement of a GNRA tetraloop in long-range RNA tertiary interactions.

E Westhof, F. Michel, E. Westhof, 1994, Journal of molecular biology.

Re-refinement of the B-dodecamer d(CGCGAATTCGCG) with a comparative analysis of the solvent in it and in the Z-hexamer d(5BrCG5BrCG5BrCG).

E. Westhof, 1987, Journal of biomolecular structure & dynamics.

Architecture of a Diels-Alderase ribozyme with a preformed catalytic pocket.

E. Westhof, A. Jäschke, B. Seelig, 2004, Chemistry & biology.

A sulfate pocket formed by three GoU pairs in the 0.97 A resolution X-ray structure of a nonameric RNA.

E. Westhof, B. Masquida, C. Sauter, 1999, RNA.

Structural motifs of the nucleotidyl unit and the handedness of polynucleotide helices

M. Sundaralingam, E. Westhof, 1981 .

Ribosomal mistranslation leads to silencing of the unfolded protein response and increased mitochondrial biogenesis

E. Westhof, H. Boukari, H. Rehrauer, 2019, Communications Biology.

Structure and electronic properties of DNA.

E. Westhof, A. Van de Vorst, 1978, Molecular biology, biochemistry, and biophysics.

A method for the analysis of puckering disorder in five-membered rings: the relative mobilities of furanose and proline rings and their effects on polynucleotide and polypeptide backbone flexibility

M. Sundaralingam, E. Westhof, E. Westhof, 1983 .

The multiple flavors of GoU pairs in RNA

E. Westhof, M. Yusupov, G. Yusupova, 2019, Journal of molecular recognition : JMR.

Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

Eric Westhof, Neocles B. Leontis, E. Westhof, 2005, Nucleic acids research.

Dimerization of HIV-1 genomic RNA of subtypes A and B: RNA loop structure and magnesium binding.

E. Westhof, T. Hermann, C. Ehresmann, 1999, RNA.

Non-canonical interactions in a kissing loop complex: the dimerization initiation site of HIV-1 genomic RNA.

E. Westhof, C. Ehresmann, B. Ehresmann, 1997, Journal of molecular biology.

Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme

Eric Westhof, Benoît Masquida, E. Westhof, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Advances in RNA 3D Structure Modeling Using Experimental Data

Eric Westhof, Yang Cao, Zhichao Miao, 2020, Frontiers in Genetics.

Solvation of the left-handed hexamer d(5BrC-G-5BrC-G-5 BrC-G) in crystals grown at two temperatures.

E. Westhof, D. Moras, B. Hartmann, 1986, Journal of molecular biology.

RNA structure from deep sequencing

E. Westhof, 2015, Nature Biotechnology.

Temperature-dependent molecular dynamics and restrained X-ray refinement simulations of a Z-DNA hexamer.

P. Weiner, R. Levy, E. Westhof, 1986, Journal of molecular biology.

Riboswitch structures: purine ligands replace tertiary contacts.

E. Westhof, A. Lescoute, 2005, Chemistry & biology.

In-line alignment and Mg2+ coordination at the cleavage site of the env22 twister ribozyme

E. Westhof, R. Micura, D. Patel, 2014, Nature Communications.

Nucleic acids. From self-assembly to induced-fit recognition.

E. Westhof, D. Patel, 1997, Current opinion in structural biology.

Toward predicting self-splicing and protein-facilitated splicing of group I introns.

E. Westhof, T. Cech, A. Lambowitz, 2008, RNA.

Function of P11, a tertiary base pairing in self-splicing introns of subgroup IA.

E. Westhof, L. Jaeger, F. Michel, 1991, Journal of molecular biology.

Protein-dependent transition states for ribonucleoprotein assembly.

K. Weeks, E. Westhof, A. Webb, 2001, Journal of molecular biology.

A three‐dimensional perspective on exon binding by a group II self‐splicing intron

E. Westhof, F. Michel, Maria Costa, 2000, The EMBO journal.

Monitoring intermediate folding states of the td group I intron in vivo

E. Westhof, B. Masquida, R. Schroeder, 2002, The EMBO journal.

The Structure of Group I Ribozymes

E. Westhof, L. Jaeger, F. Michel, 1996 .

Function of a pseudoknot in the suppression of an alternative splicing event in a group I intron.

E Westhof, F. Michel, E. Westhof, 1996, Biochimie.

Monitoring of the cooperative unfolding of the sunY group I intron of bacteriophage T4. The active form of the sunY ribozyme is stabilized by multiple interactions with 3' terminal intron components.

E Westhof, E. Westhof, L. Jaeger, 1993, Journal of molecular biology.

Activation of the catalytic core of a group I intron by a remote 3' splice junction.

E. Westhof, L. Jaeger, F. Michel, 1992, Genes & development.

Mistranslation of the genetic code by a new family of bacterial transfer RNAs

E. Westhof, D. Söll, Christopher R. Clarke, 2023, The Journal of biological chemistry.

Molecular modelling of the GIR1 branching ribozyme gives new insight into evolution of structurally related ribozymes

Eric Westhof, Steinar D Johansen, Henrik Nielsen, 2008, The EMBO journal.

On the Role of Single-Stranded Adenines in RNA-RNA Recognition

E. Westhof, 1995 .

Structural Water Bridges in Nucleic Acids

E. Westhof, 1993 .

Structural Water of Nucleic Acids

E. Westhof, 1990 .

Molecular dynamics simulations of poly(dA)·poly(dT): Comparisons between implicit and explicit solvent representations

E. Westhof, V. Fritsch, D. Beveridge, 1993, Biopolymers.

Water Science Reviews 5: Hydration of nucleic acids

E. Westhof, D. Beveridge, 1990 .

Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure

Eric Westhof, Fabrice Jossinet, E. Westhof, 2005, Bioinform..

Motif prediction in ribosomal RNAs Lessons and prospects for automated motif prediction in homologous RNA molecules.

E. Westhof, N. Leontis, J. Stombaugh, 2002, Biochimie.

High-resolution cryo-EM structure of Trypanosoma brucei 80 S : A unique eukaryotic ribosome

J. Frank, C. Bajaj, E. Westhof, 2012 .

Transfer RNA Structure

E. Westhof, P. Auffinger, 2012 .

Unique secondary and tertiary structural features of the eucaryotic selenocysteine tRNA(Sec).

E. Westhof, P. Carbon, A. Krol, 1993, Nucleic acids research.

The Architectural Motifs of Folded RNAs

Eric Westhof, E. Westhof, V. Fritsch, 2010 .

Molecular modeling of the three-dimensional structure of the bacterial RNase P holoenzyme.

Eric Westhof, Venkat Gopalan, Benoît Masquida, 2003, Journal of molecular biology.

Binding of manganese(II) to a tertiary stabilized hammerhead ribozyme as studied by electron paramagnetic resonance spectroscopy.

E. Westhof, A. Khvorova, O. Schiemann, 2005, RNA.

Role of conserved nucleotides in building the 16S rRNA binding site of E. coli ribosomal protein S8.

E. Westhof, C. Ehresmann, B. Ehresmann, 1994, Nucleic acids research.

Brief considerations on targeting RNA with small molecules

E. Westhof, Q. Vicens, 2022, Faculty reviews.

The 16S rRNA binding site of Thermus thermophilus ribosomal protein S15: comparison with Escherichia coli S15, minimum site and structure.

E. Westhof, A. Serganov, C. Ehresmann, 1996, RNA.

Identification of Up47 in three thermophilic archaea, one mesophilic archaeon, and one hyperthermophilic bacterium

E. Westhof, L. Droogmans, H. Grosjean, 2023, RNA.

Modelling the three-dimensional structure of ribonucleic acids

E. Westhof, 1993 .

The environment of two metal ions surrounding the splice site of a group I intron.

E Westhof, E. Westhof, R. Schroeder, 1996, The EMBO journal.

Three-dimensional working model of M1 RNA, the catalytic RNA subunit of ribonuclease P from Escherichia coli.

E. Westhof, S. Altman, S. Altman, 1994, Proceedings of the National Academy of Sciences of the United States of America.

Loop stereochemistry and dynamics in transfer RNA.

E. Westhof, D. Moras, P. Dumas, 1983, Journal of biomolecular structure & dynamics.

Melting of the solvent structure around a RNA duplex: a molecular dynamics simulation study.

Eric Westhof, Pascal Auffinger, E. Westhof, 2002, Biophysical chemistry.

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures

Feng Ding, Jian Wang, Janusz M Bujnicki, 2015, RNA.

Editorial overview: Protein nucleic acid interactions: order, ambiguities and disorder in recognition and complex formation between proteins and nucleic acids.

E. Westhof, D. Patel, 2018, Current opinion in structural biology.

Mutagenesis of 16S rRNA C1409-G1491 base-pair differentiates between 6'OH and 6'NH3+ aminoglycosides.

E. Westhof, A. Vasella, S. Hobbie, 2005, Journal of molecular biology.

Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding.

Tao Pan, Eric Westhof, Tobin R Sosnick, 2005, Journal of molecular biology.

A three-dimensional model of hepatitis delta virus ribozyme based on biochemical and mutational analyses

E. Westhof, N. Tanner, G. Thill, 1994, Current Biology.

Over a Decade of Bacterial Ribonuclease P Modeling

E. Westhof, B. Masquida, F. Jossinet, 2010 .

Progression of a loop–loop complex to a four‐way junction is crucial for the activity of a regulatory antisense RNA

E Westhof, E. Westhof, E. Wagner, 2000, The EMBO journal.

RNA pseudoknots

E. Westhof, L. Jaeger, 1992, Current Opinion in Structural Biology.

The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data

Karen Eilbeck, Michel Dumontier, Robert Hoehndorf, 2009, Appl. Ontology.

Rapid calculation of any dielectric function for molecular dynamics simulations of biological macromolecules

E. Westhof, V. Fritsch, M. Toulouse, 1992 .

Crystal structures of a group II intron lariat primed for reverse splicing

E. Westhof, F. Michel, D. Monachello, 2016, Science.

The ribozyme core of group II introns: a structure in want of partners.

E. Westhof, F. Michel, Maria Costa, 2009, Trends in biochemical sciences.

Effect of mutations in domain 2 on the structural organization of oocyte 5 S rRNA from Xenopus laevis.

E. Westhof, C. Ehresmann, P. Romby, 1990, Journal of molecular biology.

Solution structure of a tRNA with a large variable region: yeast tRNASer.

E. Westhof, R. Giegé, D. Moras, 1989, Journal of molecular biology.

S2S‐Assemble2: a Semi‐Automatic Bioinformatics Framework to Study and Model RNA 3D Architectures

Fabrice Jossinet, Eric Westhof, E. Westhof, 2014 .

Automated prediction of three-way junction topological families in RNA secondary structures

Dominique Barth, Alain Denise, Franck Quessette, 2012, Comput. Biol. Chem..

New metrics for comparing and assessing discrepancies between RNA 3D structures and models.

Eric Westhof, François Major, Marc Parisien, 2009, RNA.

Modeling tertiary structure of RNA

E. Westhof, B. Masquida, 2005 .

Nanostructures and nanoconstructions based on DNA

E. Westhof, 2015 .

A tale in molecular recognition: the hammerhead ribozyme

E. Westhof, 2007, Journal of molecular recognition : JMR.

Hydrophobic Groups Stabilize the Hydration Shell of 2'-O-Methylated RNA Duplexes.

E. Westhof, P. Auffinger, 2001, Angewandte Chemie.

A potential RNA drug target in the hepatitis C virus internal ribosomal entry site.

E Westhof, M Afshar, E. Westhof, 2000, RNA.

Analysis of the cooperative thermal unfolding of the td intron of bacteriophage T4.

E Westhof, E. Westhof, P. Brion, 1999, Nucleic acids research.

Bulged residues promote the progression of a loop-loop interaction to a stable and inhibitory antisense-target RNA complex.

E Westhof, E. Westhof, E. Wagner, 2001, Nucleic acids research.

An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment.

E. Westhof, E. Wagner, C. Ehresmann, 2000, RNA.

Crystal structure and fluorescence properties of the iSpinach aptamer in complex with DFHBI

Eric Westhof, Alexis Autour, Michael Ryckelynck, 2017, RNA.

Assessment of three-dimensional RNA structure prediction in CASP15

Zhichao Miao, E. Westhof, Rhiju Das, 2023, bioRxiv.

Modeling the Architecture of Structured RNAs within a Modular and Hierarchical Framework

Eric Westhof, Benoît Masquida, E. Westhof, 2008 .

Search of essential parameters for the aminoacylation of viral tRNA-like molecules. Comparison with canonical transfer RNAs.

E. Westhof, J. Ebel, T. Dreher, 1990, Biochimica et biophysica acta.

Structural studies on site-directed mutants of domain 3 of Xenopus laevis oocyte 5 S ribosomal RNA.

E. Westhof, C. Ehresmann, P. Romby, 1991, Journal of molecular biology.

Involvement of "hinge" nucleotides of Xenopus laevis 5 S rRNA in the RNA structural organization and in the binding of transcription factor TFIIIA.

E. Westhof, C. Ehresmann, P. Romby, 1991, Journal of molecular biology.

Evaluation of the stereochemical quality of predicted RNA 3D models in the RNA-Puzzles submissions

Zhichao Miao, E. Westhof, Francisco Carrascoza, 2021, bioRxiv.

RNA modeling, naturally

E. Westhof, 2012, Proceedings of the National Academy of Sciences.

Toward atomic accuracy in RNA design

Eric Westhof, E. Westhof, 2010, Nature Methods.

Modeling RNA Molecules

E. Westhof, N. Leontis, 2012 .

RNA 3D Structure Analysis and Prediction

E. Westhof, N. Leontis, 2012, Nucleic Acids and Molecular Biology.

33 High-resolution cryo-EM structure of the Trypanosoma brucei 80S: a unique eukaryotic ribosome

J. Frank, C. Bajaj, E. Westhof, 2013 .

Two conformational states in the crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site

E. Westhof, J. Kondo, A. Urzhumtsev, 2006, Nucleic acids research.

Crystallographic studies of Homo sapiens ribosomal decoding A site complexed with aminoglycosides.

E. Westhof, J. Kondo, A. Urzhumtsev, 2005, Nucleic acids symposium series.

Visualization of macromolecular structures

D. Goodsell, R. Laskowski, R. Wade, 2010, Nature Methods.

Nucleic Acids and Molecular Biology

E. Westhof, G. Steger, J. Bujnicki, 1988, Nucleic Acids and Molecular Biology.

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction

E. Westhof, M. Yusupov, G. Yusupova, 2019, Nature Communications.

Structural and Dynamical Characterization of Nucleic Acid Water and Ion Binding Sites

E. Westhof, P. Auffinger, B. Masquida, 2002 .

RNA pseudoknots

Douglas H Turner, D. Turner, E. Westhof, 1992, Current Biology.

Phylogenetic evidence for a new tertiary interaction in bacterial RNase P RNAs.

E Westhof, E. Westhof, L. Jaeger, 1997, RNA.

Mapping in three dimensions of regions in a catalytic RNA protected from attack by an Fe(II)-EDTA reagent.

E. Westhof, S. Altman, D. Wesolowski, 1996, Journal of molecular biology.

Unusual tertiary pairs in eukaryotic tRNAAla

E. Westhof, F. Dai, X. Tong, 2020, RNA.

Dimerization confers increased stability to nucleases in 5′ halves from glycine and glutamic acid tRNAs

S. Pantano, E. Westhof, J. Tosar, 2018, Nucleic acids research.

Atomic Glimpses on a Billion-Year-Old Molecular Machine

E. Westhof, N. Leontis, 2000 .

Pulling geometry defines the mechanical resistance of a β-sheet protein

Emanuele Paci, Sheena E Radford, David J Brockwell, 2003, Nature Structural Biology.

In-line alignment and Mg2+ coordination at the cleavage site of the env22 twister ribozyme

E. Westhof, R. Micura, D. Patel, 2014, Nature Communications.

RNA modeling, naturally

E. Westhof, 2012, Proceedings of the National Academy of Sciences.

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

Katarzyna J Purzycka, K. Weeks, Zhichao Miao, 2017, RNA.

Assessment of three-dimensional RNA structure prediction in CASP15

Zhichao Miao, E. Westhof, Rhiju Das, 2023, bioRxiv.

Handbook of RNA Biochemistry: Second, Completely Revised and Enlarged Edition

E. Westhof, R. Hartmann, A. Bindereif, 2014 .

Local Flexibility in Recognition Processes Between Macromolecules

E. Westhof, D. Moras, 1987 .

Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels

E. Westhof, F. Jossinet, Thomas E. Ludwig, 2010, Bioinform..

Comparative genomics of protoploid Saccharomycetaceae.

B. Dujon, C. Fairhead, A. Thierry, 2009, Genome research.

RBscore&NBench: a high-level web server for nucleic acid binding residues prediction with a large-scale benchmarking database

Eric Westhof, Zhichao Miao, Zhichao Miao, 2016, Nucleic Acids Res..

A novel double kink-turn module in euryarchaeal RNase P RNAs

E. Westhof, V. Wysocki, V. Gopalan, 2017, Nucleic acids research.

Binding of Neomycin-Class Aminoglycoside Antibiotics to Mutant Ribosomes with Alterations in the A Site of 16S rRNA

E. Westhof, S. Hobbie, E. Böttger, 2006, Antimicrobial Agents and Chemotherapy.

Structure prediction of the druggable fragments in SARS-CoV-2 untranslated regions

Tomasz K. Wirecki, Zhichao Miao, E. Westhof, 2021, bioRxiv.

New dimensions of RNA in molecular recognition and catalysis.

Elizabeth C. Theil, E. Westhof, 2011, Accounts of chemical research.

Molecular modelling of GIR 1 gives new insight into evolution of structurally related ribozymes

E. Westhof, B. Masquida, H. Nielsen, 2008 .