S. Gharbia

S. Gharbia, C. Arnold, S. Borrell, 2011, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Replacing Reverse Line Blot Hybridization Spoligotyping of the Mycobacterium tuberculosis Complex

S. Gharbia, S. Niemann, R. Diel, 2010, Journal of Clinical Microbiology.

An IS6110-targeting fluorescent amplified fragment length polymorphism alternative to IS6110 restriction fragment length polymorphism analysis for Mycobacterium tuberculosis DNA fingerprinting.

S. Gharbia, C. Arnold, P. Hawkey, 2007, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Non-culture detection of Streptococcus agalactiae (Lancefield group B Streptococcus) in clinical samples by real-time PCR.

S. Gharbia, A. Charlett, K. Edwards, 2012, Journal of medical microbiology.

Tandem Mass Spectrometry Analysis as an Approach to Delineate Genetically Related Taxa

Raju V. Misra, S. Gharbia, M. Fang, 2017 .

Rapid whole genome amplification and sequencing of low cell numbers in a bacteraemia model

Raju V. Misra, S. Gharbia, C. Anscombe, 2017, bioRxiv.

Ecophysiology and taxonomy of Bacteroides and related taxa.

S. Gharbia, H. Shah, H. Shah, 1993, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

A Paradigm Shift from Research to Front‐Line Microbial Diagnostics in MALDI‐TOF and LC‐MS/MS

S. Gharbia, H. Shah, 2017 .

The Genus Bacteroides

S. Gharbia, H. Shah, M. Welker, 2008 .

Hospitalization and Mortality Risk for COVID-19 Cases With SARS-CoV-2 AY.4.2 (VUI-21OCT-01) Compared to Non-AY.4.2 Delta Variant Sublineages

S. Gharbia, A. Charlett, A. Presanis, 2022, The Journal of infectious diseases.

Covid-19 Vaccine Effectiveness against the Omicron (B.1.1.529) Variant

S. Gharbia, S. Ladhani, M. Zambon, 2022, The New England journal of medicine.

Evaluation of chromogenic selective agar (CHROMagar STEC) for the direct detection of Shiga toxin-producing Escherichia coli from faecal specimens.

S. Gharbia, C. Jenkins, N. Perry, 2020, Journal of medical microbiology.

Studies on the virulence properties and metabolism of pleiotropic mutants of Porphyromonas gingivalis (Bacteroides gingivalis) W50.

S. Gharbia, H. Shah, S. Seddon, 1989, Oral microbiology and immunology.

Transformation of Anaerobic Microbiology since the Arrival of MALDI-TOF Mass Spectrometry

S. Gharbia, I. Dekio, E. Urbán, 2016 .

MALDI-TOF MS and currently related proteomic technologies in reconciling bacterial systematics.

S. Gharbia, I. Dekio, H. Shah, 2020, Trends in the systematics of bacteria and fungi.

Microbial DNA analysis by MALDI-TOF mass spectrometry

S. Gharbia, C. Ring, H. Shah, 2017 .

Characterization of Prevotella intermedia and Prevotella nigrescens isolates from periodontic and endodontic infections.

S. Gharbia, K. Lounatmaa, D. Devine, 1994, Journal of periodontology.

Tandem Mass Spectrometry Analysis as an Approach to Delineate Genetically Related Taxa, with Specific Implication for Differentiating Escherichia coli from amongst the Complex Enterobacteriaceae Family

Raju V. Misra, S. Gharbia, M. Fang, 2014 .

Challenges of the Unknown: Clinical Application of Microbial Metagenomics

Raju V. Misra, S. Gharbia, C. Anscombe, 2015, International journal of genomics.

Distribution and frequency of Fusobacterium nucleatum subspecies in the human oral cavity.

P. Lawson, S. Gharbia, M. Haapasalo, 1990, Oral microbiology and immunology.

Isolation and Preparation of Spore Proteins and Subsequent Characterisation by Electrophoresis and Mass Spectrometry

S. Gharbia, H. Shah, N. Thorne, 2010 .

Biochemical and chemical studies on strains designated Prevotella intermedia and proposal of a new pigmented species, Prevotella nigrescens sp. nov.

S. Gharbia, H. Shah, 1992, International journal of systematic bacteriology.

Lysis of erythrocytes by the secreted cysteine proteinase of Porphyromonas gingivalis W83.

S. Gharbia, H. Shah, 1989, FEMS microbiology letters.

Utilization of aspartate, glutamate, and their corresponding peptides byFusobacterium nucleatum subspecies andPorphyromonas gingivalis

S. Gharbia, H. Shah, 1991, Current Microbiology.

The influence of peptides on the uptake of amino acids inFusobacterium; predicted interactions withPorphyromonas gingivalis

S. Gharbia, H. Shah, S. Welch, 1989, Current Microbiology.

Assessment of the relative cytotoxicity of Porphyromonas gingivalis cells, products, and components on human epithelial cell lines.

S. Gharbia, H. Shah, H. Shah, 1992, Journal of periodontology.

Demonstration that 1-trans-epoxysuccinyl-L-leucylamido-(4-guanidino) butane (E-64) is one of the most effective low Mr inhibitors of trypsin-catalysed hydrolysis. Characterization by kinetic analysis and by energy minimization and molecular dynamics simulation of the E-64-beta-trypsin complex.

S. Gharbia, L. Caves, K. Brocklehurst, 1996, The Biochemical journal.

5S ribosomal ribonucleic acid sequences in Bacteroides and Fusobacterium: evolutionary relationships within these genera and among eubacteria in general.

G. Fox, S. Gharbia, Y. van de Peer, 1989, International journal of systematic bacteriology.

Taxonomy and biochemical characteristics of Actinobacillus actinomycetemcomitans and Porphyromonas gingivalis.

S. Gharbia, H. Shah, I. Olsen, 1999, Periodontology 2000.

Molecular analysis of surface-associated enzymes of Porphyromonas gingivalis.

S. Gharbia, H. Shah, 1995, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Hydrolytic enzymes liberated by black-pigmented gram-negative anaerobes.

S. Gharbia, H. Shah, 1993, FEMS immunology and medical microbiology.

Utility of real-time amplification of selected 16S rRNA gene sequences as a tool for detection and identification of microbial signatures directly from clinical samples.

S. Gharbia, J. Logan, K. Edwards, 2012, Journal of medical microbiology.

Mathematical Modelling of Mycobacterium tuberculosis VNTR Loci Estimates a Very Slow Mutation Rate for the Repeats

Saheer Gharbia, Anthony Underwood, Catherine Arnold, 2008, Journal of Molecular Evolution.

Development of a candidate reference material for adventitious virus detection in vaccine and biologicals manufacturing by deep sequencing

Raju V. Misra, S. Gharbia, B. Ottenwälder, 2015, Vaccine.

Approaches to the study of the systematics of anaerobic, gram-negative, non-sporeforming rods: current status and perspectives.

S. Gharbia, Radhey S. Gupta, I. Olsen, 2009, Anaerobe.

Fusobacterium nucleatum subsp. fusiforme subsp. nov. and Fusobacterium nucleatum subsp. animalis subsp. nov. as additional subspecies within Fusobacterium nucleatum.

S. Gharbia, H. Shah, 1992, International journal of systematic bacteriology.

Enzymes of Diagnostic Importance Within the Bacteroidaceae; Use as Possible Ecological Markers

S. Gharbia, H. Shah, S. Seddon, 1988 .

Biochemical and chemical analyses of black-pigmented gram-negative anaerobes.

S. Gharbia, H. Shah, H N Shah, 1993, FEMS immunology and medical microbiology.

Protein expression diversity amongst serovars of Salmonella enterica.

S. Gharbia, R. Wait, V. Encheva, 2007, Microbiology.

Proteome analysis of serovars Typhimurium and Pullorum of Salmonella enterica subspecies I

S. Gharbia, R. Wait, V. Encheva, 2005, BMC Microbiology.

Characteristics of glutamate dehydrogenase, a new diagnostic marker for the genus Fusobacterium.

S. Gharbia, H. Shah, 1988, Journal of general microbiology.

BOOKS AND SOFTWARE IN REVIEW

S. Gharbia, H. Shah, 2011 .

Proteomic analysis of the adaptive response of Salmonella enterica serovar Typhimurium to growth under anaerobic conditions.

S. Gharbia, V. Encheva, H. Shah, 2009, Microbiology.

Developing an integrated proteo-genomic approach for the characterisation of biomarkers for the identification of Bacillus anthracis.

Raju V. Misra, S. Gharbia, M. Fang, 2012, Journal of microbiological methods.

Antibiotic resistance potential of the healthy preterm infant gut microbiome

Raju V. Misra, S. Gharbia, J. Kroll, 2017, PeerJ.

The enigma of cobalamin (Vitamin B12) biosynthesis in Porphyromonas gingivalis. Identification and characterization of a functional corrin pathway.

S. Gharbia, H. Schubert, H. Shah, 2000, The Journal of biological chemistry.

The Effect of Nucleic Acid Extraction Platforms and Sample Storage on the Integrity of Viral RNA for Use in Whole Genome Sequencing.

S. Gharbia, D. Bailey, R. Vipond, 2017, The Journal of molecular diagnostics : JMD.

Effectiveness of COVID-19 vaccines against the Omicron (B.1.1.529) variant of concern

S. Gharbia, R. Myers, N. Andrews, 2021, medRxiv.

Coherent pipeline for biomarker discovery using mass spectrometry and bioinformatics

Min Fang, Ali Al-Shahib, Raju Misra, 2010, BMC Bioinformatics.

Parallel Evolution in Streptococcus pneumoniae Biofilms

Richard J. Edwards, Raju V. Misra, S. Gharbia, 2016, Genome biology and evolution.

Whole Genome Sequence and Comparative Genomics Analysis of Multi-drug Resistant Environmental Staphylococcus epidermidis ST59

Raju V. Misra, S. Gharbia, M. Holmes, 2018, G3: Genes, Genomes, Genetics.

Mapping of the Proteogenome ofClostridium difficileIsolates of Varying Virulence

Raju V. Misra, S. Gharbia, M. Fang, 2017 .

Comparative proteomic analysis of Clostridium difficile isolates of varying virulence.

S. Gharbia, S. Borriello, M. Fang, 2014, Journal of medical microbiology.

The Gram stain: a declining synapomorphy in an emerging evolutionary tree

S. Gharbia, M. Collins, H. Shah, 1997 .

Complete Genome Sequence of the Hypervirulent Bacterium Clostridium difficile Strain G46, Ribotype 027

J. Korlach, P. Baybayan, Raju V. Misra, 2015, Genome Announcements.

Analysis of a small outbreak of Shiga toxin-producing Escherichia coli O157:H7 using long-read sequencing

T. Dallman, S. Gharbia, C. Jenkins, 2021, Microbial genomics.

Use of Nanopore Sequencing to Characterise the Genomic Architecture of Mobile Genetic Elements Encoding blaCTX-M-15 in Escherichia coli Causing Travellers’ Diarrhoea

S. Gharbia, C. Jenkins, G. Godbole, 2022, Frontiers in Microbiology.

Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit rRNA.

P. Lawson, S. Gharbia, M. Collins, 1991, International journal of systematic bacteriology.

Virulence Searcher: a tool for searching raw genome sequences from bacterial genomes for putative virulence factors.

S. Gharbia, A. Underwood, A. Mulder, 2005, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

The Enigma of Cobalamin (Vitamin B12) Biosynthesis inPorphyromonas gingivalis

S. Gharbia, H. Schubert, H. Shah, 2000, The Journal of Biological Chemistry.

Transfer of a Traditional Serotyping System (Kauffmann–White) onto a MALDI‐TOF‐MS Platform for the Rapid Typing of Salmonella Isolates

S. Gharbia, C. Arnold, Chloe Bishop, 2010 .

Interactions between black-pigmented gram-negative anaerobes and other species which may be important in disease development.

S. Gharbia, H. Shah, 1993, FEMS immunology and medical microbiology.

Biochemical properties of Fusobacterium naviforme and phenotypically similar isolates

S. Gharbia, H. Shah, 1991 .

Honoring Don Whitley, pioneer of innovative scientific instruments for Anaerobic Microbiology (1929-2019).

S. Gharbia, H. Shah, Laila M. N. Shah, 2019, Anaerobe.

Biochemical and Chemical Studies on Strains Prevotella intermedia and Proposal of a New Designated Pigmented Species, Prevotella nigrescens sp. nov.

S. Gharbia, H. Shah, 1992 .

Characterization of Prevotella intermedia and Prevotella nigrescens by enzyme production, restriction endonuclease and ribosomal RNA gene restriction analyses.

S. Gharbia, R. Dixon, D. Devine, 1996, Oral microbiology and immunology.

Species-specificity of monoclonal antibodies recognising Prevotella intermedia and Prevotella nigrescens.

S. Gharbia, R. Gmür, R. Dixon, 1994, FEMS microbiology letters.

Evaluation of Genomic Typing Methods in the Salmonella Reference Laboratory in Public Health, England, 2012–2020

S. Gharbia, C. Jenkins, A. Painset, 2023, Pathogens.

Multispacer Sequence Typing for Mycobacterium tuberculosis Genotyping

S. Gharbia, D. Raoult, M. Drancourt, 2008, PloS one.

Progress in the identification of nonmotile Bacteroidaceae from dental plaque.

S. Gharbia, H. Shah, 1994, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Identification of Fusobacterium species by the electrophoretic migration of glutamate dehydrogenase and 2-oxoglutarate reductase in relation to their DNA base composition and peptidoglycan dibasic amino acids.

S. Gharbia, H. Shah, 1990, Journal of Medical Microbiology.

Glutamate dehydrogenase and 2-oxoglutarate reductase electrophoretic patterns and deoxyribonucleic acid-deoxyribonucleic acid hybridization among human oral isolates of Fusobacterium nucleatum

S. Gharbia, H. Shah, 1989 .

Dissecting the taxonomic heterogeneity within Propionibacterium acnes: proposal for Propionibacterium acnes subsp. acnes subsp. nov. and Propionibacterium acnes subsp. elongatum subsp. nov.

M. Hattori, M. Sakamoto, Raju V. Misra, 2015, International journal of systematic and evolutionary microbiology.

Comparison of the amino acid uptake profile of reference and clinical isolates of Fusobacterium nucleatum subspecies.

S. Gharbia, H. Shah, 1991, Oral microbiology and immunology.

Isolation, purification and characterisation of 2-oxoglutarate reductase from Fusobacterium nucleatum.

S. Gharbia, H. Shah, 1991, FEMS microbiology letters.

Pathways of glutamate catabolism among Fusobacterium species.

S. Gharbia, H. Shah, 1991, Journal of general microbiology.

The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis

Daniel J. Wilson, Youwen Qin, M. Inouye, 2022, The Lancet. Microbe.

Corrigendum: Performance comparison of benchtop high-throughput sequencing platforms

T. Dallman, J. Wain, N. Loman, 2012, Nature Biotechnology.

The uptake of amino acids from a chemically defined medium byFusobacterium species

S. Gharbia, H. Shah, 1989, Current Microbiology.

Glucose utilization and growth response to protein hydrolysates byFusobacterium species

S. Gharbia, H. Shah, 1988, Current Microbiology.

Measurement of electrical bioimpedance for studying utilization of amino acids and peptides by Porphyromonas gingivalis, Fusobacterium nucleatum, and Treponema denticola.

S. Gharbia, M. I. Zhang, H. Shah, 1993, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Automated comparative sequence analysis by base-specific cleavage and mass spectrometry for nucleic acid-based microbial typing

Charles R. Cantor, Christiane Honisch, Catherine Arnold, 2007, Proceedings of the National Academy of Sciences.

Outbreak of Shiga toxin-producing Escherichia coli O157 linked with consumption of a fast-food product containing imported cucumbers, United Kingdom, August 2020.

T. Dallman, S. Gharbia, N. Verlander, 2021, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.

Phylogenetic structure of Shiga toxin-producing Escherichia coli O157:H7 from sub-lineage to SNPs

T. Dallman, S. Gharbia, C. Jenkins, 2021, Microbial genomics.

The Application of Matrix-Assisted Laser Desorption/Ionisation Time of Flight Mass Spectrometry to Profile the Surface of Intact Bacterial Cells

S. Gharbia, H. Shah, M. Claydon, 2000 .

The Application of Matrix-Assisted Laser Desorption/Ionisation Time of Flight Mass Spectrometry to Profile the Surface of Intact

S. Gharbia, H. Shah, C. J. Keys, 2000 .

Premature neonatal gut microbial community patterns supporting an epithelial TLR-mediated pathway for necrotizing enterocolitis

Raju V. Misra, S. Gharbia, A. Shaw, 2021, BMC microbiology.

Single-nucleotide polymorphism-based differentiation and drug resistance detection in Mycobacterium tuberculosis from isolates or directly from sputum.

S. Gharbia, C. Arnold, A. Underwood, 2005, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

A data compendium of Mycobacterium tuberculosis antibiotic resistance

Daniel J. Wilson, G. Rodger, Z. Iqbal, 2021, bioRxiv.

Prevalence and Persistence of Antibiotic Resistance Determinants in the Gut of Travelers Returning to the United Kingdom is Associated with Colonization by Pathogenic Escherichia coli

T. Dallman, N. Loman, S. Gharbia, 2023, Microbiology spectrum.

Bedaquiline and clofazimine resistance in Mycobacterium tuberculosis: an in-vitro and in-silico data analysis

Daniel J. Wilson, G. Rodger, Z. Iqbal, 2023, The Lancet. Microbe.

Phylogenetic context of Shiga toxin-producing Escherichia coli serotype O26:H11 in England

T. Dallman, S. Gharbia, C. Jenkins, 2019, Microbial genomics.

Oligonucleotide probes to the 16S ribosomal RNA: implications of sequence homology and secondary structure with particular reference to the oral species Prevotella intermedia and Prevotella nigrescens.

S. Gharbia, C. Scully, S. Finegold, 2008, Oral diseases.

Tracing the transition of methicillin resistance in sub-populations of Staphylococcus aureus, using SELDI-TOF Mass Spectrometry and Artificial Neural Network Analysis.

Ali Al-Shahib, Graham Ball, Raju Misra, 2011, Systematic and applied microbiology.

The distribution of the bft alleles among enterotoxigenic Bacteroides fragilis strains from stool specimens and extraintestinal sites.

S. Gharbia, H. Shah, B. Gulluoglu, 2006, Anaerobe.

Correlation between Phylogroups and Intracellular Proteomes of Propionibacterium acnes and Differences in the Protein Expression Profiles between Anaerobically and Aerobically Grown Cells

S. Gharbia, I. Dekio, G. Ball, 2013, BioMed research international.

Genetic diversity of Propionibacterium acnes strains isolated from human skin in Japan and comparison with their distribution in Europe.

S. Gharbia, I. Dekio, E. Morita, 2012, Journal of medical microbiology.

The Challenges of Identifying Mycobacterium to the Species Level using MALDI-TOF MS

S. Gharbia, H. Shah, G. Rose, 2017 .

Characterization of a 4.2-kb plasmid isolated from periodontopathic spirochetes.

S. Gharbia, R. Siboo, E. Chan, 1996, Oral microbiology and immunology.

Distribution and characterization of plasmids in oral anaerobic spirochetes.

S. Gharbia, T. Keng, R. Siboo, 1995, Oral microbiology and immunology.

The Impact of the Environment on Human Infections

S. Gharbia, H. Shah, 1999 .

Evolution of short sequence repeats in Mycobacterium tuberculosis.

S. Gharbia, C. Arnold, A. Underwood, 2006, FEMS microbiology letters.

Complete Genome Sequences of BK Polyomavirus Strains from Two Patients with Urinary Tract Infection, Sequenced Using the Ion Torrent Platform

Raju V. Misra, S. Gharbia, C. Crump, 2017, Genome Announcements.

Evolutionary clues from comparative analysis of Mycobacterium tuberculosis variable-number tandem repeat sequences within genetic families.

S. Gharbia, C. Arnold, A. Underwood, 2007, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Comparison of extraction procedures for proteome analysis of Streptococcus pneumoniae and a basic reference map

S. Gharbia, R. Wait, V. Encheva, 2006, Proteomics.

Flagellin gene sequence evolution in Salmonella.

S. Gharbia, C. Arnold, J. Logan, 2007, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

The use of a 16s rDNA directed PCR for the detection of endodontopathogenic bacteria.

S. Gharbia, F. Lampert, H. Shah, 1997, Journal of endodontics.

Combined genomarkers approach to Salmonella characterization reveals that nucleotide sequence differences in the phase 1 flagellin gene fliC are markers for variation within serotypes.

S. Gharbia, C. Arnold, C. Honisch, 2012, Journal of medical microbiology.

Performance comparison of benchtop high-throughput sequencing platforms

T. Dallman, J. Wain, N. Loman, 2012, Nature Biotechnology.

Comparison of four-colour IS6110-fAFLP with the classic IS6110-RFLP on the ability to detect recent transmission in the city of Barcelona, Spain.

S. Gharbia, A. Orcau, C. Arnold, 2009, Tuberculosis.

Whole Genome Sequence and Comparative Genomics Analysis of Multi-drug Resistant Environmental Staphylococcus epidermidis ST59

Raju V. Misra, S. Gharbia, M. Holmes, 2018, G3: Genes, Genomes, Genetics.

The biochemical milieu of the host in the selection of anaerobic species in the oral cavity.

S. Gharbia, H. Shah, 1995, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Complete Genome Sequence of the Hypervirulent Bacterium Clostridium difficile Strain G 46 , Ribotype 027

J. Korlach, P. Baybayan, Raju V. Misra, 2015 .

International Committee on Systematics of Prokaryotes * Subcommittee on the taxonomy of Gram-negative anaerobic rods: Minutes of the open meeting, 1-2 February 2011, Health Protection Agency, Colindale, London, UK

S. Gharbia, K. Bernard, H. Shah, 2012 .